Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47409 * 2 1 4 4 N 1.46904 * 109.46943 * 119.99892 * 2 1 3 5 5 C 1.46900 * 111.00255 * 205.71041 * 4 2 1 6 6 H 1.09000 * 109.46872 * 326.37000 * 5 4 2 7 7 C 1.52999 * 109.47265 * 86.36646 * 5 4 2 8 8 C 1.50696 * 109.47224 * 206.37298 * 5 4 2 9 9 H 1.07999 * 120.00054 * 359.97438 * 8 5 4 10 10 C 1.37880 * 120.00025 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99790 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 120.00302 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.47233 * 59.99514 * 12 10 8 14 14 H 1.48495 * 109.47507 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46904 * 299.99637 * 12 10 8 16 16 C 1.50699 * 109.47320 * 239.99647 * 2 1 3 17 17 C 1.38258 * 119.92874 * 279.72925 * 16 2 1 18 18 C 1.38240 * 120.14342 * 179.68916 * 17 16 2 19 19 C 1.38554 * 120.02621 * 0.59051 * 18 17 16 20 20 C 1.39268 * 119.82826 * 359.68595 * 19 18 17 21 21 C 1.38233 * 119.92845 * 100.00197 * 16 2 1 22 22 O 1.36492 * 108.63584 * 179.97438 * 20 19 18 23 23 C 1.43985 * 105.49178 * 342.72516 * 22 20 19 24 24 O 1.36493 * 131.53062 * 179.68154 * 19 18 17 25 25 H 1.09000 * 109.47237 * 175.52675 * 1 2 3 26 26 H 1.08997 * 109.47333 * 295.52768 * 1 2 3 27 27 H 1.08997 * 109.46630 * 55.53249 * 1 2 3 28 28 H 1.00896 * 110.99672 * 329.66419 * 4 2 1 29 29 H 1.08997 * 109.47155 * 185.75358 * 7 5 4 30 30 H 1.09005 * 109.46960 * 305.75724 * 7 5 4 31 31 H 1.08997 * 109.46764 * 65.75521 * 7 5 4 32 32 H 0.96998 * 120.00084 * 179.97438 * 11 10 8 33 33 H 1.08003 * 119.92677 * 359.97438 * 17 16 2 34 34 H 1.08001 * 119.98630 * 180.27440 * 18 17 16 35 35 H 1.08002 * 119.98599 * 0.02562 * 21 16 2 36 36 H 1.09002 * 110.57385 * 268.55782 * 23 22 20 37 37 H 1.08998 * 110.57673 * 145.67693 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3601 -0.2195 1.5702 6 1 3.9186 0.0323 0.6687 7 6 3.2361 1.0214 2.4566 8 6 4.0851 -1.3047 2.3236 9 1 3.5987 -2.2509 2.5089 10 6 5.3692 -1.0892 2.7772 11 7 5.9614 0.0634 2.5520 12 14 6.2678 -2.4340 3.7118 13 1 6.3886 -3.6385 2.8517 14 1 7.6228 -1.9559 4.0864 15 1 5.5064 -2.7769 4.9397 16 6 2.0324 -0.7105 -1.2304 17 6 2.0714 -2.0921 -1.2615 18 6 2.5254 -2.7486 -2.3902 19 6 2.9542 -2.0221 -3.4894 20 6 2.9202 -0.6302 -3.4559 21 6 2.4584 0.0208 -2.3234 22 8 3.3896 -0.1537 -4.6457 23 6 4.0920 -1.2553 -5.2509 24 8 3.4443 -2.4176 -4.7003 25 1 -0.3634 -1.0245 -0.0802 26 1 -0.3634 0.4429 0.9273 27 1 -0.3632 0.5816 -0.8473 28 1 1.3736 -0.5864 1.9672 29 1 4.2275 1.4320 2.6476 30 1 2.6242 1.7689 1.9516 31 1 2.7681 0.7472 3.4020 32 1 6.8646 0.2152 2.8714 33 1 1.7422 -2.6599 -0.4038 34 1 2.5507 -3.8280 -2.4134 35 1 2.4314 1.1001 -2.2945 36 1 5.1460 -1.2364 -4.9734 37 1 3.9799 -1.2320 -6.3349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067406012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -54.825929 kcal Electronic energy + Delta-G solvation = -19943.752094 eV Core-core repulsion = 16879.293941 eV Total energy + Delta-G solvation = -3064.458153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.07263 -39.73415 -37.45535 -37.23559 -34.96999 -32.65413 -31.43616 -30.05190 -28.38889 -27.15498 -26.68921 -24.52527 -23.86372 -22.39232 -21.61366 -18.82318 -18.46153 -18.29818 -18.10900 -17.17795 -16.73308 -16.17060 -15.52768 -15.40069 -15.28169 -14.82566 -14.52227 -14.22187 -14.05667 -13.95627 -13.71158 -13.45825 -13.21498 -12.97271 -12.77032 -12.40389 -12.36038 -12.29032 -12.08475 -11.84617 -11.82545 -11.46970 -10.95909 -10.44275 -9.77151 -8.99669 -8.89410 -8.05264 -6.14574 0.22329 0.30409 1.44924 1.46179 1.53320 1.80735 2.46582 2.55377 2.69413 3.24248 3.52581 3.62150 3.85595 3.92938 4.09216 4.21856 4.28890 4.38388 4.48115 4.51798 4.61925 4.79447 4.89291 4.94161 5.00876 5.11458 5.12277 5.17054 5.35313 5.37327 5.46902 5.56555 5.69237 5.76038 5.90625 6.18907 6.33174 6.70433 6.91444 7.02465 7.55001 9.00514 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.006034 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.947200 B = 4639.084788 C = 5357.343916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.122 3.878 3 H 0.036 0.964 4 N -0.674 5.674 5 C 0.222 3.778 6 H -0.003 1.003 7 C -0.155 4.155 8 C -0.506 4.506 9 H 0.059 0.941 10 C 0.007 3.993 11 N -0.925 5.925 12 Si 0.955 3.045 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.269 1.269 16 C -0.058 4.058 17 C -0.075 4.075 18 C -0.108 4.108 19 C 0.007 3.993 20 C 0.010 3.990 21 C -0.111 4.111 22 O -0.326 6.326 23 C 0.204 3.796 24 O -0.324 6.324 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.339 0.661 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.258 0.742 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 -1.644 -11.145 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 H 0.054 0.946 4 N -0.305 5.305 5 C 0.113 3.887 6 H 0.015 0.985 7 C -0.214 4.214 8 C -0.545 4.545 9 H 0.077 0.923 10 C -0.191 4.191 11 N -0.566 5.566 12 Si 0.781 3.219 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.194 1.194 16 C -0.059 4.059 17 C -0.093 4.093 18 C -0.126 4.126 19 C -0.037 4.037 20 C -0.034 4.034 21 C -0.130 4.130 22 O -0.243 6.243 23 C 0.094 3.906 24 O -0.240 6.240 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.110 0.890 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.999 -2.094 -11.689 14.318 hybrid contribution 1.019 0.541 0.666 1.332 sum -6.980 -1.553 -11.023 13.140 Atomic orbital electron populations 1.21891 0.91524 1.03257 1.02802 1.20349 0.95988 0.93946 0.88524 0.94594 1.60578 1.04186 1.59335 1.06403 1.18873 0.85695 0.91458 0.92685 0.98531 1.22234 1.00963 0.98962 0.99247 1.21432 0.98753 1.00365 1.33947 0.92325 1.25688 0.98424 0.97514 0.97442 1.70029 1.13937 1.24511 1.48127 0.85663 0.77436 0.79582 0.79230 1.20099 1.21505 1.19418 1.19791 0.97865 0.94173 0.94117 1.20941 0.97705 0.94028 0.96644 1.20361 1.01674 1.01100 0.89480 1.19963 1.03780 0.92084 0.87885 1.19807 1.03820 0.91654 0.88110 1.20054 1.02455 1.00705 0.89747 1.87273 1.70091 1.37734 1.29228 1.26069 0.94701 0.69568 1.00282 1.87274 1.71559 1.36505 1.28704 0.91230 0.91192 0.91104 0.84177 0.92721 0.95435 0.94700 0.93311 0.83361 0.83193 0.84685 0.88986 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.20 71.98 0.66 -2.67 16 2 C 0.12 4.01 2.61 44.17 0.12 4.12 16 3 H 0.04 1.27 7.06 -2.39 -0.02 1.25 16 4 N -0.67 -25.94 5.27 -477.17 -2.51 -28.46 16 5 C 0.22 10.80 2.37 44.17 0.10 10.90 16 6 H 0.00 -0.18 7.65 -2.39 -0.02 -0.20 16 7 C -0.15 -7.22 8.85 71.98 0.64 -6.58 16 8 C -0.51 -27.37 8.84 25.60 0.23 -27.15 16 9 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 10 C 0.01 0.39 5.30 84.65 0.45 0.84 16 11 N -0.93 -53.63 11.38 21.45 0.24 -53.38 16 12 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 C -0.06 -1.99 4.66 -19.86 -0.09 -2.08 16 17 C -0.07 -2.49 9.32 22.27 0.21 -2.28 16 18 C -0.11 -3.39 10.06 22.35 0.22 -3.16 16 19 C 0.01 0.23 7.15 22.59 0.16 0.39 16 20 C 0.01 0.34 7.15 22.59 0.16 0.50 16 21 C -0.11 -3.74 9.68 22.34 0.22 -3.53 16 22 O -0.33 -9.92 11.40 -75.96 -0.87 -10.78 16 23 C 0.20 4.69 8.89 113.37 1.01 5.69 16 24 O -0.32 -9.51 11.40 -75.97 -0.87 -10.38 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.52 8.03 -2.39 -0.02 1.51 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.34 11.97 8.01 -89.70 -0.72 11.25 16 29 H 0.05 2.90 6.24 -2.39 -0.01 2.88 16 30 H 0.03 1.11 7.49 -2.38 -0.02 1.09 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 33 H 0.15 4.80 7.70 -2.91 -0.02 4.78 16 34 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 35 H 0.14 4.20 8.03 -2.91 -0.02 4.18 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.17 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -63.82 309.50 2.46 -61.35 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.36 Total: 20.72 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 4.08 Total: -25.00 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.27 Total: -81.84 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.73 Total: -21.16 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.82 2.46 -61.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.529 kcal (2) G-P(sol) polarization free energy of solvation -63.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds