Wall clock time and date at job start Mon Mar 30 2020 06:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47534 * 120.00159 * 2 1 3 5 5 C 1.52998 * 109.47277 * 184.99971 * 4 2 1 6 6 C 1.50700 * 109.46892 * 180.02562 * 5 4 2 7 7 O 1.20825 * 120.00241 * 0.02562 * 6 5 4 8 8 O 1.34232 * 119.99994 * 179.97438 * 6 5 4 9 9 N 1.46506 * 109.47026 * 240.00535 * 2 1 3 10 10 C 1.38853 * 120.00046 * 84.99594 * 9 2 1 11 11 C 1.39566 * 119.83735 * 180.02562 * 10 9 2 12 12 C 1.36346 * 120.15717 * 179.72707 * 11 10 9 13 13 C 1.40881 * 119.83542 * 0.25218 * 12 11 10 14 14 C 1.41141 * 120.15580 * 180.02562 * 13 12 11 15 15 H 1.08011 * 119.99432 * 335.08402 * 14 13 12 16 16 C 1.39857 * 120.00701 * 155.09421 * 14 13 12 17 17 N 1.30910 * 119.99602 * 342.12336 * 16 14 13 18 18 Si 1.86802 * 120.00640 * 162.12840 * 16 14 13 19 19 H 1.48501 * 109.47176 * 94.64918 * 18 16 14 20 20 H 1.48501 * 109.47269 * 214.65103 * 18 16 14 21 21 H 1.48503 * 109.46663 * 334.65340 * 18 16 14 22 22 C 1.40881 * 119.69350 * 359.97438 * 13 12 11 23 23 C 1.36347 * 119.83410 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47614 * 59.99639 * 1 2 3 25 25 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47424 * 299.99844 * 1 2 3 27 27 H 1.08996 * 109.46926 * 305.00165 * 4 2 1 28 28 H 1.09005 * 109.46585 * 64.99661 * 4 2 1 29 29 H 1.09006 * 109.46791 * 300.00041 * 5 4 2 30 30 H 1.08997 * 109.47226 * 60.00166 * 5 4 2 31 31 H 0.96690 * 117.00124 * 180.02562 * 8 6 5 32 32 H 0.97005 * 119.99551 * 264.99837 * 9 2 1 33 33 H 1.07994 * 119.92307 * 0.02562 * 11 10 9 34 34 H 1.08007 * 120.08080 * 180.28095 * 12 11 10 35 35 H 0.96997 * 120.00042 * 179.97438 * 17 16 14 36 36 H 1.08005 * 120.08341 * 179.97438 * 22 13 12 37 37 H 1.08003 * 119.91741 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5437 7 8 3.2859 -1.8625 3.2918 8 8 5.3828 -1.3604 2.8077 9 7 2.0183 -0.6905 -1.1963 10 6 2.1508 0.0022 -2.3923 11 6 2.6158 -0.6591 -3.5300 12 6 2.7432 0.0135 -4.7092 13 6 2.4091 1.3805 -4.7760 14 6 2.5378 2.0831 -5.9933 15 1 3.2354 1.7404 -6.7434 16 6 1.7625 3.2231 -6.2283 17 7 0.6916 3.4459 -5.5090 18 14 2.2547 4.4278 -7.5683 19 1 1.5275 4.0994 -8.8208 20 1 1.9105 5.8085 -7.1436 21 1 3.7176 4.3331 -7.8060 22 6 1.9449 2.0426 -3.6224 23 6 1.8225 1.3575 -2.4500 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7516 -1.7715 1.2055 29 1 3.9994 -1.0728 0.4257 30 1 3.8532 0.4370 1.3573 31 1 5.6573 -1.8285 3.6080 32 1 2.2490 -1.6317 -1.1527 33 1 2.8708 -1.7072 -3.4774 34 1 3.0988 -0.5006 -5.5899 35 1 0.1540 4.2367 -5.6717 36 1 1.6874 3.0906 -3.6665 37 1 1.4663 1.8637 -1.5649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080176370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:26 Heat of formation + Delta-G solvation = -84.702570 kcal Electronic energy + Delta-G solvation = -19082.136201 eV Core-core repulsion = 16016.382500 eV Total energy + Delta-G solvation = -3065.753702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40811 -38.31870 -36.60391 -36.06797 -33.67752 -32.05558 -30.18722 -29.40687 -28.00822 -25.41377 -24.21900 -21.87315 -21.22499 -20.56331 -19.48068 -18.21147 -17.20895 -16.68513 -16.53121 -15.98799 -15.22091 -14.86149 -13.96612 -13.88045 -13.63226 -13.26719 -12.94646 -12.63273 -12.54965 -11.98292 -11.87121 -11.75536 -11.69841 -11.43895 -11.29442 -11.13049 -10.99288 -10.77805 -10.67876 -10.58922 -10.43099 -9.69505 -9.27762 -9.22974 -8.53449 -7.48662 -6.63875 -6.38391 -4.02731 2.05357 2.90464 2.91904 3.10445 3.15308 3.20244 3.35671 4.05983 4.27374 4.69178 4.77837 4.89493 4.98763 5.35209 5.49308 5.54364 5.73883 5.82473 5.85910 6.00189 6.02455 6.22142 6.27994 6.32718 6.38255 6.55740 6.94240 6.95734 7.20809 7.36280 7.56616 7.69561 7.72279 7.84664 8.15842 8.29899 8.50218 8.70521 8.80748 9.06853 9.15889 10.37913 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033573 B = 0.003746 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.813345 B = 7473.828353 C = 7697.220132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.159 3.841 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.112 4.112 6 C 0.478 3.522 7 O -0.521 6.521 8 O -0.519 6.519 9 N -0.757 5.757 10 C 0.093 3.907 11 C -0.159 4.159 12 C -0.187 4.187 13 C 0.075 3.925 14 C -0.468 4.468 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.808 5.808 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.125 4.125 23 C -0.164 4.164 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.407 0.593 32 H 0.382 0.618 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.276 0.724 36 H 0.117 0.883 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -4.938 12.389 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.150 4.150 6 C 0.322 3.678 7 O -0.410 6.410 8 O -0.330 6.330 9 N -0.392 5.392 10 C -0.003 4.003 11 C -0.182 4.182 12 C -0.207 4.207 13 C 0.072 3.928 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.435 5.435 18 Si 0.726 3.274 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.144 4.144 23 C -0.186 4.186 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.265 0.735 32 H 0.215 0.785 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.268 -4.541 12.337 13.546 hybrid contribution 0.312 -0.113 -0.097 0.345 sum 3.580 -4.655 12.240 13.576 Atomic orbital electron populations 1.22285 0.96640 1.01796 1.01899 1.20599 0.93219 0.96736 0.84211 0.90676 1.21734 0.92151 1.02430 0.98779 1.21423 0.97672 1.02195 0.93682 1.23818 0.79586 0.77250 0.87189 1.90711 1.56908 1.43832 1.49545 1.84584 1.27081 1.72644 1.48713 1.43998 1.77194 1.10976 1.07067 1.17318 1.05385 0.91958 0.85667 1.19807 1.07782 0.97482 0.93080 1.20545 1.09744 0.94601 0.95844 1.17488 0.91774 0.90518 0.93037 1.19368 1.20325 1.08484 1.01719 0.91004 1.25782 0.93465 0.97972 0.96779 1.69858 1.10905 1.25516 1.37235 0.86425 0.80138 0.79745 0.81069 1.19890 1.20297 1.18679 1.20933 1.02722 0.99728 0.91063 1.20121 1.07804 0.92745 0.97917 0.91605 0.92946 0.92878 0.90274 0.90901 0.87018 0.87471 0.73496 0.78507 0.89686 0.89161 0.91368 0.86498 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.41 37.15 0.35 -1.93 16 2 C 0.16 2.15 2.26 -67.93 -0.15 2.00 16 3 H 0.08 1.08 6.44 -51.93 -0.33 0.75 16 4 C -0.11 -1.26 4.04 -26.73 -0.11 -1.36 16 5 C -0.11 -1.16 5.70 -27.88 -0.16 -1.32 16 6 C 0.48 5.20 8.33 36.01 0.30 5.50 16 7 O -0.52 -7.09 16.74 -18.75 -0.31 -7.41 16 8 O -0.52 -4.55 13.42 -39.26 -0.53 -5.07 16 9 N -0.76 -12.03 4.67 -52.04 -0.24 -12.27 16 10 C 0.09 1.93 6.65 -83.69 -0.56 1.37 16 11 C -0.16 -3.47 9.82 -39.77 -0.39 -3.86 16 12 C -0.19 -4.57 9.74 -39.26 -0.38 -4.95 16 13 C 0.07 1.99 5.57 -106.80 -0.59 1.40 16 14 C -0.47 -12.64 9.03 -37.88 -0.34 -12.98 16 15 H 0.07 1.88 7.91 -52.48 -0.41 1.46 16 16 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 17 N -0.81 -21.31 10.98 55.54 0.61 -20.70 16 18 Si 0.90 19.12 29.60 -169.99 -5.03 14.09 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.12 -3.20 8.63 -39.26 -0.34 -3.54 16 23 C -0.16 -3.68 8.75 -39.77 -0.35 -4.03 16 24 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 28 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 29 H 0.11 1.19 7.75 -51.93 -0.40 0.79 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.41 1.81 9.10 45.56 0.41 2.22 16 32 H 0.38 5.47 8.60 -40.82 -0.35 5.12 16 33 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.12 3.13 6.18 -52.48 -0.32 2.81 16 37 H 0.09 1.82 6.06 -52.48 -0.32 1.50 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -30.11 314.56 -7.80 -37.90 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.22 Total: 10.58 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.81 Total: -21.86 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.37 Total: -32.98 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.84 Total: -12.48 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.11 -7.80 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080176370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.798 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds