Wall clock time and date at job start Mon Mar 30 2020 06:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47534 * 120.00159 * 2 1 3 5 5 C 1.52998 * 109.47277 * 184.99971 * 4 2 1 6 6 C 1.50700 * 109.46892 * 180.02562 * 5 4 2 7 7 O 1.20825 * 120.00241 * 0.02562 * 6 5 4 8 8 O 1.34232 * 119.99994 * 179.97438 * 6 5 4 9 9 N 1.46506 * 109.47026 * 240.00535 * 2 1 3 10 10 C 1.38853 * 120.00046 * 84.99594 * 9 2 1 11 11 C 1.39566 * 119.83735 * 180.02562 * 10 9 2 12 12 C 1.36346 * 120.15717 * 179.72707 * 11 10 9 13 13 C 1.40881 * 119.83542 * 0.25218 * 12 11 10 14 14 C 1.41141 * 120.15580 * 180.02562 * 13 12 11 15 15 H 1.08011 * 119.99432 * 335.08402 * 14 13 12 16 16 C 1.39857 * 120.00701 * 155.09421 * 14 13 12 17 17 N 1.30910 * 119.99602 * 342.12336 * 16 14 13 18 18 Si 1.86802 * 120.00640 * 162.12840 * 16 14 13 19 19 H 1.48501 * 109.47176 * 94.64918 * 18 16 14 20 20 H 1.48501 * 109.47269 * 214.65103 * 18 16 14 21 21 H 1.48503 * 109.46663 * 334.65340 * 18 16 14 22 22 C 1.40881 * 119.69350 * 359.97438 * 13 12 11 23 23 C 1.36347 * 119.83410 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47614 * 59.99639 * 1 2 3 25 25 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47424 * 299.99844 * 1 2 3 27 27 H 1.08996 * 109.46926 * 305.00165 * 4 2 1 28 28 H 1.09005 * 109.46585 * 64.99661 * 4 2 1 29 29 H 1.09006 * 109.46791 * 300.00041 * 5 4 2 30 30 H 1.08997 * 109.47226 * 60.00166 * 5 4 2 31 31 H 0.96690 * 117.00124 * 180.02562 * 8 6 5 32 32 H 0.97005 * 119.99551 * 264.99837 * 9 2 1 33 33 H 1.07994 * 119.92307 * 0.02562 * 11 10 9 34 34 H 1.08007 * 120.08080 * 180.28095 * 12 11 10 35 35 H 0.96997 * 120.00042 * 179.97438 * 17 16 14 36 36 H 1.08005 * 120.08341 * 179.97438 * 22 13 12 37 37 H 1.08003 * 119.91741 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5437 7 8 3.2859 -1.8625 3.2918 8 8 5.3828 -1.3604 2.8077 9 7 2.0183 -0.6905 -1.1963 10 6 2.1508 0.0022 -2.3923 11 6 2.6158 -0.6591 -3.5300 12 6 2.7432 0.0135 -4.7092 13 6 2.4091 1.3805 -4.7760 14 6 2.5378 2.0831 -5.9933 15 1 3.2354 1.7404 -6.7434 16 6 1.7625 3.2231 -6.2283 17 7 0.6916 3.4459 -5.5090 18 14 2.2547 4.4278 -7.5683 19 1 1.5275 4.0994 -8.8208 20 1 1.9105 5.8085 -7.1436 21 1 3.7176 4.3331 -7.8060 22 6 1.9449 2.0426 -3.6224 23 6 1.8225 1.3575 -2.4500 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7516 -1.7715 1.2055 29 1 3.9994 -1.0728 0.4257 30 1 3.8532 0.4370 1.3573 31 1 5.6573 -1.8285 3.6080 32 1 2.2490 -1.6317 -1.1527 33 1 2.8708 -1.7072 -3.4774 34 1 3.0988 -0.5006 -5.5899 35 1 0.1540 4.2367 -5.6717 36 1 1.6874 3.0906 -3.6665 37 1 1.4663 1.8637 -1.5649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080176370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:26 Heat of formation + Delta-G solvation = -103.033222 kcal Electronic energy + Delta-G solvation = -19082.931078 eV Core-core repulsion = 16016.382500 eV Total energy + Delta-G solvation = -3066.548578 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25197 -39.90893 -37.87371 -37.04886 -35.38722 -33.44221 -31.53748 -31.15089 -29.68140 -26.56904 -25.81424 -23.38617 -22.56269 -21.88975 -20.86763 -19.11552 -19.04533 -17.99366 -17.45402 -17.11373 -16.75551 -16.35676 -15.63547 -15.13987 -14.65712 -14.59707 -14.30326 -14.15482 -13.90807 -13.66134 -13.48353 -13.10740 -12.82393 -12.71305 -12.58607 -12.51741 -12.33073 -12.23789 -12.06092 -11.72878 -11.57300 -11.52223 -11.08971 -11.03121 -10.25109 -9.34139 -8.51810 -8.10186 -5.96505 1.15203 1.22702 1.23878 1.41594 1.54084 1.61952 2.18310 2.29498 2.87557 2.94693 3.81302 3.90736 3.95765 4.11443 4.41272 4.46036 4.56144 4.59496 4.67188 4.78531 4.87866 4.93365 5.06236 5.11294 5.22111 5.24045 5.33651 5.43864 5.50769 5.64573 5.75808 5.86718 6.02276 6.23551 6.45058 6.72413 6.93506 7.02234 7.12796 7.20938 7.38651 8.51375 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033573 B = 0.003746 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.813345 B = 7473.828353 C = 7697.220132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.158 3.842 3 H 0.070 0.930 4 C -0.101 4.101 5 C -0.112 4.112 6 C 0.487 3.513 7 O -0.552 6.552 8 O -0.516 6.516 9 N -0.744 5.744 10 C 0.121 3.879 11 C -0.168 4.168 12 C -0.196 4.196 13 C 0.034 3.966 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.033 3.967 17 N -0.842 5.842 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.143 4.143 23 C -0.172 4.172 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.426 0.574 32 H 0.395 0.605 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.281 0.719 36 H 0.096 0.904 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 -5.679 13.856 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.149 4.149 6 C 0.331 3.669 7 O -0.443 6.443 8 O -0.330 6.330 9 N -0.379 5.379 10 C 0.022 3.978 11 C -0.190 4.190 12 C -0.217 4.217 13 C 0.031 3.969 14 C -0.540 4.540 15 H 0.083 0.917 16 C -0.179 4.179 17 N -0.471 5.471 18 Si 0.795 3.205 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.186 1.186 22 C -0.163 4.163 23 C -0.194 4.194 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.288 0.712 32 H 0.230 0.770 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.813 -5.321 13.854 15.323 hybrid contribution 0.179 -0.042 -0.348 0.393 sum 3.993 -5.363 13.506 15.071 Atomic orbital electron populations 1.22242 0.96410 1.02089 1.01605 1.20741 0.93300 0.96652 0.84120 0.91153 1.21579 0.92741 1.02095 0.97449 1.21404 0.97080 1.02836 0.93625 1.23757 0.79873 0.76471 0.86758 1.90709 1.57738 1.45250 1.50606 1.84537 1.25867 1.72661 1.49939 1.44038 1.76080 1.11524 1.06215 1.17374 1.02109 0.91351 0.86986 1.20100 1.07477 0.98957 0.92440 1.20743 1.09600 0.94119 0.97201 1.17796 0.93783 0.91820 0.93519 1.19591 1.21540 1.10490 1.02334 0.91653 1.26562 0.92976 0.99178 0.99171 1.69922 1.11808 1.26294 1.39058 0.85333 0.79606 0.77438 0.78098 1.19201 1.19310 1.18558 1.20862 1.04069 0.99169 0.92234 1.20271 1.07885 0.93700 0.97559 0.94512 0.92366 0.90599 0.89334 0.90793 0.86997 0.86494 0.71239 0.77007 0.86539 0.88907 0.90874 0.88572 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.41 71.98 0.68 -3.42 16 2 C 0.16 3.84 2.26 44.99 0.10 3.94 16 3 H 0.07 1.84 6.44 -2.39 -0.02 1.82 16 4 C -0.10 -1.93 4.04 30.59 0.12 -1.80 16 5 C -0.11 -1.99 5.70 29.85 0.17 -1.82 16 6 C 0.49 9.28 8.33 71.24 0.59 9.88 16 7 O -0.55 -13.74 16.74 21.97 0.37 -13.37 16 8 O -0.52 -7.61 13.42 -51.44 -0.69 -8.30 16 9 N -0.74 -21.58 4.67 -318.55 -1.49 -23.07 16 10 C 0.12 4.80 6.65 38.67 0.26 5.06 16 11 C -0.17 -7.05 9.82 22.15 0.22 -6.83 16 12 C -0.20 -9.69 9.74 22.48 0.22 -9.48 16 13 C 0.03 1.85 5.57 -21.27 -0.12 1.74 16 14 C -0.51 -28.60 9.03 23.37 0.21 -28.38 16 15 H 0.07 3.58 7.91 -2.90 -0.02 3.56 16 16 C 0.03 1.73 5.13 85.22 0.44 2.17 16 17 N -0.84 -45.99 10.98 21.81 0.24 -45.75 16 18 Si 0.97 40.17 29.60 68.60 2.03 42.20 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 22 C -0.14 -7.58 8.63 22.48 0.19 -7.39 16 23 C -0.17 -7.68 8.75 22.15 0.19 -7.49 16 24 H 0.04 1.13 7.69 -2.39 -0.02 1.11 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 28 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 29 H 0.11 2.02 7.75 -2.38 -0.02 2.01 16 30 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.43 2.61 9.10 -74.06 -0.67 1.94 16 32 H 0.40 9.90 8.60 -92.70 -0.80 9.11 16 33 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 36 H 0.10 5.40 6.18 -2.91 -0.02 5.39 16 37 H 0.11 4.32 6.06 -2.91 -0.02 4.30 16 Total: -1.00 -66.47 314.56 3.36 -63.11 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.37 Total: 29.01 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 3.28 Total: -43.83 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.25 Total: -68.82 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.32 Total: -21.67 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -66.47 3.36 -63.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080176370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.922 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds