Wall clock time and date at job start Mon Mar 30 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35717 * 116.99566 * 2 1 4 4 C 1.39027 * 119.90954 * 359.72814 * 3 2 1 5 5 C 1.37662 * 120.09301 * 179.72603 * 4 3 2 6 6 C 1.39816 * 119.90649 * 0.56550 * 5 4 3 7 7 C 1.47496 * 120.09439 * 179.73012 * 6 5 4 8 8 O 1.21624 * 119.99959 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00069 * 359.97328 * 7 6 5 10 10 C 1.36902 * 120.00119 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99975 * 359.97438 * 10 9 7 12 12 C 1.39019 * 120.00027 * 180.02562 * 10 9 7 13 13 N 1.31379 * 120.00177 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99902 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47124 * 89.99589 * 14 12 10 16 16 H 1.48501 * 109.47090 * 210.00043 * 14 12 10 17 17 H 1.48503 * 109.46812 * 329.99592 * 14 12 10 18 18 C 1.39774 * 119.81153 * 359.70289 * 6 5 4 19 19 C 1.37710 * 119.90531 * 0.02562 * 18 6 5 20 20 C 1.50700 * 119.95307 * 180.02562 * 19 18 6 21 21 C 1.53002 * 109.46867 * 300.01877 * 20 19 18 22 22 C 1.53000 * 109.47573 * 60.01507 * 20 19 18 23 23 H 1.09001 * 109.47103 * 60.00555 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00115 * 1 2 3 26 26 H 1.08002 * 119.94743 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.04868 * 180.24708 * 5 4 3 28 28 H 0.97004 * 120.00091 * 0.02562 * 9 7 6 29 29 H 0.96995 * 120.00288 * 179.97438 * 13 12 10 30 30 H 1.08007 * 120.05074 * 180.02562 * 18 6 5 31 31 H 1.08997 * 109.46891 * 180.02562 * 20 19 18 32 32 H 1.08995 * 109.47635 * 60.00274 * 21 20 19 33 33 H 1.09006 * 109.47130 * 180.02562 * 21 20 19 34 34 H 1.09001 * 109.47261 * 299.99916 * 21 20 19 35 35 H 1.09004 * 109.46704 * 60.00082 * 22 20 19 36 36 H 1.08999 * 109.47374 * 180.02562 * 22 20 19 37 37 H 1.08995 * 109.47042 * 300.00648 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2860 2.3740 -0.0057 5 6 1.9069 3.6026 0.0000 6 6 3.3030 3.6781 -0.0005 7 6 3.9726 4.9924 -0.0004 8 8 5.1872 5.0560 -0.0003 9 7 3.2385 6.1227 -0.0005 10 6 3.8600 7.3425 -0.0010 11 1 4.9386 7.3991 -0.0009 12 6 3.1028 8.5084 -0.0005 13 7 1.7908 8.4396 -0.0001 14 14 3.9509 10.1729 -0.0004 15 1 4.1753 10.6141 -1.4005 16 1 3.0955 11.1642 0.7001 17 1 5.2561 10.0633 0.6993 18 6 4.0624 2.5047 -0.0004 19 6 3.4332 1.2797 -0.0004 20 6 4.2509 0.0138 0.0003 21 6 5.1344 -0.0232 -1.2483 22 6 5.1326 -0.0232 1.2501 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2076 2.3147 -0.0106 27 1 1.3165 4.5070 -0.0005 28 1 2.2698 6.0719 -0.0002 29 1 1.2625 9.2531 0.0006 30 1 5.1411 2.5585 -0.0003 31 1 3.5848 -0.8489 -0.0003 32 1 5.8005 0.8395 -1.2479 33 1 5.7255 -0.9391 -1.2481 34 1 4.5063 0.0031 -2.1388 35 1 4.5032 0.0032 2.1396 36 1 5.7244 -0.9386 1.2503 37 1 5.7986 0.8396 1.2506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082546421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:09 Heat of formation + Delta-G solvation = -66.618522 kcal Electronic energy + Delta-G solvation = -19535.169766 eV Core-core repulsion = 16470.200248 eV Total energy + Delta-G solvation = -3064.969519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21637 -38.37494 -36.96354 -35.00118 -34.04150 -31.38140 -29.87555 -29.65852 -27.33557 -26.98940 -25.09228 -23.16491 -22.47018 -20.22169 -19.06446 -18.24487 -17.70898 -16.32682 -16.06006 -15.69212 -14.76659 -14.39385 -14.28763 -14.00892 -13.72713 -13.62176 -13.15841 -13.08930 -13.04959 -12.27923 -12.19935 -11.95565 -11.78634 -11.63748 -11.46706 -11.17374 -11.05715 -10.74993 -10.51280 -10.45691 -10.37296 -10.18809 -9.59293 -8.55213 -8.47991 -8.07159 -7.80459 -6.53249 -3.86961 1.45602 1.66312 3.15046 3.22582 3.28835 3.35129 3.66406 4.11131 4.51002 4.78445 4.88251 4.93835 5.09698 5.11488 5.26176 5.30878 5.35768 5.37251 5.44178 5.66820 5.71241 5.75475 5.91168 5.95503 5.99067 5.99960 6.17163 6.33464 6.38185 6.41312 6.65635 6.73500 6.94477 7.03241 7.45647 7.54029 7.99350 8.53535 9.08910 9.45613 10.00822 10.64080 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.004800 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.443113 B = 5831.726568 C = 6681.113243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.124 3.876 4 C -0.209 4.209 5 C -0.068 4.068 6 C -0.127 4.127 7 C 0.472 3.528 8 O -0.599 6.599 9 N -0.547 5.547 10 C -0.294 4.294 11 H 0.107 0.893 12 C 0.023 3.977 13 N -0.893 5.893 14 Si 0.934 3.066 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.035 4.035 19 C -0.116 4.116 20 C -0.046 4.046 21 C -0.144 4.144 22 C -0.144 4.144 23 H 0.054 0.946 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.393 0.607 29 H 0.275 0.725 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -15.529 0.009 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.079 3.921 4 C -0.227 4.227 5 C -0.087 4.087 6 C -0.131 4.131 7 C 0.260 3.740 8 O -0.486 6.486 9 N -0.181 5.181 10 C -0.424 4.424 11 H 0.125 0.875 12 C -0.180 4.180 13 N -0.534 5.534 14 Si 0.760 3.240 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.055 4.055 19 C -0.117 4.117 20 C -0.065 4.065 21 C -0.201 4.201 22 C -0.201 4.201 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.228 0.772 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.880 -15.470 0.014 15.736 hybrid contribution -0.755 1.109 -0.010 1.341 sum -3.635 -14.362 0.004 14.814 Atomic orbital electron populations 1.23014 0.78899 1.03425 1.01428 1.85971 1.20895 1.27221 1.88926 1.18904 0.91700 0.83861 0.97668 1.21049 0.99647 0.92105 1.09940 1.21199 0.93982 0.97310 0.96255 1.20241 0.93156 0.94989 1.04720 1.17660 0.87238 0.83453 0.85639 1.90593 1.13424 1.87020 1.57544 1.41882 1.09233 1.04900 1.62093 1.19824 0.94136 0.81742 1.46713 0.87495 1.25357 0.95424 1.00273 0.96954 1.69592 1.04485 1.30229 1.49058 0.85790 0.79114 0.80501 0.78550 1.20206 1.20776 1.19195 1.20878 1.00476 0.89464 0.94650 1.19076 0.90013 0.95498 1.07102 1.19900 0.96040 0.94927 0.95584 1.21871 0.99395 1.01739 0.97136 1.21870 0.99399 1.01744 0.97128 0.92730 0.88647 0.92734 0.85558 0.85295 0.77221 0.91547 0.84480 0.90036 0.92164 0.92724 0.92744 0.92739 0.92723 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.17 9.24 -18.86 -0.17 -4.34 16 3 C 0.12 1.89 6.67 -39.01 -0.26 1.63 16 4 C -0.21 -3.18 9.01 -39.50 -0.36 -3.54 16 5 C -0.07 -1.22 9.53 -39.20 -0.37 -1.59 16 6 C -0.13 -2.63 5.88 -104.96 -0.62 -3.25 16 7 C 0.47 11.95 7.71 -12.49 -0.10 11.85 16 8 O -0.60 -16.99 15.91 5.26 0.08 -16.91 16 9 N -0.55 -14.30 5.23 -11.93 -0.06 -14.36 16 10 C -0.29 -8.25 9.68 -15.00 -0.15 -8.40 16 11 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 12 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 13 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 14 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 18 C -0.04 -0.65 8.24 -39.20 -0.32 -0.97 16 19 C -0.12 -1.84 4.79 -104.54 -0.50 -2.34 16 20 C -0.05 -0.61 3.05 -91.77 -0.28 -0.89 16 21 C -0.14 -1.75 9.00 37.16 0.33 -1.42 16 22 C -0.14 -1.75 9.00 37.16 0.33 -1.42 16 23 H 0.05 0.47 7.64 -51.93 -0.40 0.07 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.13 1.56 6.28 -52.49 -0.33 1.23 16 27 H 0.13 2.26 6.39 -52.49 -0.34 1.93 16 28 H 0.39 9.72 5.92 -40.82 -0.24 9.48 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.14 2.57 6.67 -52.48 -0.35 2.22 16 31 H 0.08 1.04 6.98 -51.93 -0.36 0.68 16 32 H 0.06 0.78 7.38 -51.93 -0.38 0.39 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.78 7.38 -51.93 -0.38 0.39 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -31.21 310.66 -5.96 -37.18 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.80 Total: 9.84 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.39 Total: -8.58 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.66 Total: -37.60 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.09 Total: -21.25 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.21 -5.96 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082546421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.442 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds