Wall clock time and date at job start Mon Mar 30 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35717 * 116.99566 * 2 1 4 4 C 1.39027 * 119.90954 * 359.72814 * 3 2 1 5 5 C 1.37662 * 120.09301 * 179.72603 * 4 3 2 6 6 C 1.39816 * 119.90649 * 0.56550 * 5 4 3 7 7 C 1.47496 * 120.09439 * 179.73012 * 6 5 4 8 8 O 1.21624 * 119.99959 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00069 * 359.97328 * 7 6 5 10 10 C 1.36902 * 120.00119 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99975 * 359.97438 * 10 9 7 12 12 C 1.39019 * 120.00027 * 180.02562 * 10 9 7 13 13 N 1.31379 * 120.00177 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99902 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47124 * 89.99589 * 14 12 10 16 16 H 1.48501 * 109.47090 * 210.00043 * 14 12 10 17 17 H 1.48503 * 109.46812 * 329.99592 * 14 12 10 18 18 C 1.39774 * 119.81153 * 359.70289 * 6 5 4 19 19 C 1.37710 * 119.90531 * 0.02562 * 18 6 5 20 20 C 1.50700 * 119.95307 * 180.02562 * 19 18 6 21 21 C 1.53002 * 109.46867 * 300.01877 * 20 19 18 22 22 C 1.53000 * 109.47573 * 60.01507 * 20 19 18 23 23 H 1.09001 * 109.47103 * 60.00555 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00115 * 1 2 3 26 26 H 1.08002 * 119.94743 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.04868 * 180.24708 * 5 4 3 28 28 H 0.97004 * 120.00091 * 0.02562 * 9 7 6 29 29 H 0.96995 * 120.00288 * 179.97438 * 13 12 10 30 30 H 1.08007 * 120.05074 * 180.02562 * 18 6 5 31 31 H 1.08997 * 109.46891 * 180.02562 * 20 19 18 32 32 H 1.08995 * 109.47635 * 60.00274 * 21 20 19 33 33 H 1.09006 * 109.47130 * 180.02562 * 21 20 19 34 34 H 1.09001 * 109.47261 * 299.99916 * 21 20 19 35 35 H 1.09004 * 109.46704 * 60.00082 * 22 20 19 36 36 H 1.08999 * 109.47374 * 180.02562 * 22 20 19 37 37 H 1.08995 * 109.47042 * 300.00648 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2860 2.3740 -0.0057 5 6 1.9069 3.6026 0.0000 6 6 3.3030 3.6781 -0.0005 7 6 3.9726 4.9924 -0.0004 8 8 5.1872 5.0560 -0.0003 9 7 3.2385 6.1227 -0.0005 10 6 3.8600 7.3425 -0.0010 11 1 4.9386 7.3991 -0.0009 12 6 3.1028 8.5084 -0.0005 13 7 1.7908 8.4396 -0.0001 14 14 3.9509 10.1729 -0.0004 15 1 4.1753 10.6141 -1.4005 16 1 3.0955 11.1642 0.7001 17 1 5.2561 10.0633 0.6993 18 6 4.0624 2.5047 -0.0004 19 6 3.4332 1.2797 -0.0004 20 6 4.2509 0.0138 0.0003 21 6 5.1344 -0.0232 -1.2483 22 6 5.1326 -0.0232 1.2501 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2076 2.3147 -0.0106 27 1 1.3165 4.5070 -0.0005 28 1 2.2698 6.0719 -0.0002 29 1 1.2625 9.2531 0.0006 30 1 5.1411 2.5585 -0.0003 31 1 3.5848 -0.8489 -0.0003 32 1 5.8005 0.8395 -1.2479 33 1 5.7255 -0.9391 -1.2481 34 1 4.5063 0.0031 -2.1388 35 1 4.5032 0.0032 2.1396 36 1 5.7244 -0.9386 1.2503 37 1 5.7986 0.8396 1.2506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082546421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:09 Heat of formation + Delta-G solvation = -86.277163 kcal Electronic energy + Delta-G solvation = -19536.022229 eV Core-core repulsion = 16470.200248 eV Total energy + Delta-G solvation = -3065.821981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50684 -40.10280 -38.27611 -36.23977 -36.09581 -33.39369 -31.28013 -30.90356 -28.37228 -27.95891 -26.94700 -24.42635 -23.99801 -21.57922 -20.65834 -20.13902 -18.96731 -17.94842 -17.41784 -16.70954 -16.65785 -15.83494 -15.68589 -15.49399 -15.30254 -15.00315 -14.67954 -14.31131 -14.27615 -13.67348 -13.54729 -13.31496 -12.98778 -12.92906 -12.89503 -12.55769 -12.44315 -12.12983 -12.03309 -11.94529 -11.58229 -11.57701 -11.46530 -10.52099 -10.12510 -9.88315 -9.14221 -8.55654 -6.00815 0.00915 0.32702 1.39353 1.40478 1.54154 2.03810 2.26445 2.33147 2.79981 3.12129 3.29449 3.62005 3.79886 4.10057 4.10579 4.27511 4.30381 4.34913 4.46032 4.47276 4.52956 4.69986 4.79235 4.83059 4.90543 4.99957 5.01744 5.15367 5.20126 5.29607 5.35178 5.40485 5.47248 5.58876 5.69605 5.94296 6.39891 6.50452 7.02334 7.43683 8.00336 8.61949 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.004800 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.443113 B = 5831.726568 C = 6681.113243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.142 3.858 4 C -0.202 4.202 5 C -0.066 4.066 6 C -0.163 4.163 7 C 0.469 3.531 8 O -0.640 6.640 9 N -0.555 5.555 10 C -0.338 4.338 11 H 0.083 0.917 12 C -0.009 4.009 13 N -0.913 5.913 14 Si 0.999 3.001 15 H -0.268 1.268 16 H -0.266 1.266 17 H -0.272 1.272 18 C -0.038 4.038 19 C -0.119 4.119 20 C -0.044 4.044 21 C -0.143 4.143 22 C -0.143 4.143 23 H 0.064 0.936 24 H 0.125 0.875 25 H 0.064 0.936 26 H 0.163 0.837 27 H 0.128 0.872 28 H 0.397 0.603 29 H 0.282 0.718 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -17.376 -0.009 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.231 6.231 3 C 0.095 3.905 4 C -0.220 4.220 5 C -0.086 4.086 6 C -0.167 4.167 7 C 0.259 3.741 8 O -0.530 6.530 9 N -0.190 5.190 10 C -0.467 4.467 11 H 0.101 0.899 12 C -0.210 4.210 13 N -0.552 5.552 14 Si 0.822 3.178 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.196 1.196 18 C -0.057 4.057 19 C -0.119 4.119 20 C -0.062 4.062 21 C -0.200 4.200 22 C -0.200 4.200 23 H 0.083 0.917 24 H 0.143 0.857 25 H 0.083 0.917 26 H 0.180 0.820 27 H 0.146 0.854 28 H 0.233 0.767 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.629 -17.344 -0.005 17.952 hybrid contribution -0.338 1.428 -0.005 1.467 sum -4.967 -15.917 -0.010 16.674 Atomic orbital electron populations 1.23426 0.76323 1.05866 1.02404 1.85994 1.23428 1.25635 1.88036 1.19010 0.91593 0.84844 0.95035 1.21337 1.01443 0.90761 1.08454 1.21205 0.92661 0.98669 0.96027 1.19949 0.94543 0.92998 1.09199 1.18445 0.86940 0.84944 0.83728 1.90535 1.15384 1.88025 1.59054 1.41872 1.09377 1.04810 1.62923 1.19786 0.93475 0.83386 1.50091 0.89948 1.26170 0.96105 1.03158 0.95586 1.69645 1.05313 1.31550 1.48741 0.84842 0.77981 0.76106 0.78889 1.19326 1.19086 1.19632 1.20797 0.99856 0.90015 0.95067 1.19330 0.91031 0.95492 1.06073 1.19979 0.96177 0.93673 0.96377 1.21861 0.99224 1.02328 0.96563 1.21861 0.99229 1.02332 0.96555 0.91699 0.85700 0.91712 0.81969 0.85413 0.76708 0.90805 0.85874 0.88779 0.93712 0.90257 0.92943 0.92939 0.90256 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.12 9.24 -90.39 -0.84 -7.95 16 3 C 0.14 3.95 6.67 22.64 0.15 4.10 16 4 C -0.20 -5.65 9.01 22.32 0.20 -5.45 16 5 C -0.07 -2.36 9.53 22.52 0.21 -2.15 16 6 C -0.16 -6.99 5.88 -20.08 -0.12 -7.11 16 7 C 0.47 25.16 7.71 86.68 0.67 25.83 16 8 O -0.64 -38.73 15.91 -4.11 -0.07 -38.79 16 9 N -0.56 -30.51 5.23 -309.92 -1.62 -32.13 16 10 C -0.34 -19.85 9.68 84.09 0.81 -19.03 16 11 H 0.08 5.13 7.15 -2.91 -0.02 5.11 16 12 C -0.01 -0.50 5.50 84.95 0.47 -0.03 16 13 N -0.91 -49.31 13.05 21.68 0.28 -49.02 16 14 Si 1.00 42.94 29.55 68.60 2.03 44.96 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 16 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C -0.04 -1.44 8.24 22.52 0.19 -1.25 16 19 C -0.12 -3.63 4.79 -19.81 -0.09 -3.72 16 20 C -0.04 -1.07 3.05 -11.54 -0.04 -1.10 16 21 C -0.14 -3.25 9.00 71.98 0.65 -2.61 16 22 C -0.14 -3.25 9.00 71.98 0.65 -2.61 16 23 H 0.06 0.80 7.64 -2.39 -0.02 0.79 16 24 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.06 0.80 7.66 -2.39 -0.02 0.79 16 26 H 0.16 3.34 6.28 -2.91 -0.02 3.32 16 27 H 0.13 4.52 6.39 -2.91 -0.02 4.50 16 28 H 0.40 20.51 5.92 -92.71 -0.55 19.96 16 29 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.12 4.93 6.67 -2.91 -0.02 4.91 16 31 H 0.09 2.09 6.98 -2.39 -0.02 2.08 16 32 H 0.04 1.15 7.38 -2.39 -0.02 1.13 16 33 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.15 7.38 -2.39 -0.02 1.13 16 Total: -1.00 -70.22 310.66 5.19 -65.02 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.54 Total: 31.74 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.86 Total: -13.82 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.34 Total: -81.16 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.90 Total: -46.74 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.22 5.19 -65.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082546421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.252 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds