Wall clock time and date at job start Mon Mar 30 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35663 * 116.99989 * 2 1 4 4 C 1.38679 * 120.15413 * 359.72307 * 3 2 1 5 5 C 1.38070 * 120.09183 * 180.25614 * 4 3 2 6 6 C 1.38562 * 120.40070 * 0.03984 * 5 4 3 7 7 C 1.50700 * 119.84514 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47304 * 299.97757 * 7 6 5 9 9 C 1.52994 * 109.47226 * 59.97955 * 7 6 5 10 10 C 1.37770 * 120.30735 * 359.95849 * 6 5 4 11 11 C 1.39769 * 119.89938 * 0.02562 * 10 6 5 12 12 C 1.47429 * 120.19614 * 179.97438 * 11 10 6 13 13 O 1.21631 * 119.99979 * 180.02562 * 12 11 10 14 14 N 1.34771 * 120.00070 * 0.02562 * 12 11 10 15 15 C 1.36906 * 119.99887 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00439 * 359.97438 * 15 14 12 17 17 C 1.39022 * 119.99980 * 180.02562 * 15 14 12 18 18 N 1.31380 * 120.00179 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99959 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47214 * 90.00453 * 19 17 15 21 21 H 1.48501 * 109.47231 * 210.00634 * 19 17 15 22 22 H 1.48497 * 109.47299 * 330.00723 * 19 17 15 23 23 H 1.09001 * 109.47144 * 300.00404 * 1 2 3 24 24 H 1.09004 * 109.47101 * 59.99740 * 1 2 3 25 25 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.95678 * 0.25079 * 4 3 2 27 27 H 1.07998 * 119.80238 * 179.97438 * 5 4 3 28 28 H 1.09009 * 109.46714 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.46774 * 60.00072 * 8 7 6 30 30 H 1.08997 * 109.46841 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.47078 * 300.00050 * 8 7 6 32 32 H 1.09005 * 109.47127 * 60.00276 * 9 7 6 33 33 H 1.09006 * 109.47203 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47405 * 299.99632 * 9 7 6 35 35 H 1.07996 * 120.05086 * 180.02562 * 10 6 5 36 36 H 0.96997 * 120.00045 * 359.97438 * 14 12 11 37 37 H 0.97006 * 119.99987 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2928 2.3738 -0.0058 5 6 1.9210 3.6034 -0.0111 6 6 3.3042 3.6840 -0.0116 7 6 3.9768 5.0326 -0.0180 8 6 3.5594 5.8048 -1.2712 9 6 3.5587 5.8170 1.2272 10 6 4.0675 2.5371 -0.0058 11 6 3.4449 1.2858 -0.0001 12 6 4.2553 0.0543 0.0055 13 8 3.7097 -1.0328 0.0101 14 7 5.6007 0.1330 0.0056 15 6 6.3533 -1.0106 0.0103 16 1 5.8689 -1.9759 0.0143 17 6 7.7412 -0.9295 0.0109 18 7 8.4634 -2.0269 0.0149 19 14 8.5791 0.7400 0.0047 20 1 8.8003 1.1881 1.4031 21 1 9.8853 0.6357 -0.6942 22 1 7.7180 1.7235 -0.6998 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2141 2.3194 -0.0062 27 1 1.3306 4.5077 -0.0161 28 1 5.0587 4.8990 -0.0170 29 1 2.4776 5.9383 -1.2721 30 1 4.0463 6.7800 -1.2760 31 1 3.8573 5.2459 -2.1584 32 1 3.8562 5.2669 2.1201 33 1 4.0456 6.7923 1.2228 34 1 2.4769 5.9506 1.2263 35 1 5.1454 2.6048 -0.0058 36 1 6.0359 0.9999 0.0016 37 1 9.4318 -1.9703 0.0157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082546423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:06 Heat of formation + Delta-G solvation = -77.683604 kcal Electronic energy + Delta-G solvation = -19795.906014 eV Core-core repulsion = 16730.456678 eV Total energy + Delta-G solvation = -3065.449336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51963 -39.75703 -39.00780 -36.07292 -35.57761 -33.88804 -32.17993 -30.28034 -28.16305 -27.86857 -27.09019 -24.65903 -23.39404 -21.94342 -21.10976 -20.04226 -18.97601 -17.69435 -17.36745 -16.73996 -16.68250 -15.94682 -15.65937 -15.45325 -15.34483 -15.05573 -14.59287 -14.29239 -14.20604 -14.10693 -13.62403 -13.29363 -13.02883 -12.91781 -12.85334 -12.48199 -12.19804 -12.11551 -11.97512 -11.80849 -11.63539 -11.58428 -11.47684 -10.45087 -10.31597 -10.00765 -9.03699 -8.48256 -6.05355 -0.04183 0.41925 1.23728 1.31420 1.38498 2.03308 2.16954 2.45058 2.78980 2.84091 3.23021 3.71264 3.80951 3.87380 4.10466 4.28438 4.38226 4.38720 4.40460 4.41893 4.54124 4.68989 4.71358 4.86041 4.92411 4.97760 5.09527 5.16529 5.24760 5.34063 5.40998 5.50605 5.50777 5.67875 5.82801 5.88441 6.48297 6.59285 6.80691 7.30862 7.89877 8.69192 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.007438 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.447905 B = 3763.801330 C = 5418.188848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.150 3.850 4 C -0.206 4.206 5 C -0.047 4.047 6 C -0.117 4.117 7 C -0.054 4.054 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.068 4.068 11 C -0.177 4.177 12 C 0.485 3.515 13 O -0.610 6.610 14 N -0.581 5.581 15 C -0.330 4.330 16 H 0.058 0.942 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.956 3.044 20 H -0.251 1.251 21 H -0.264 1.264 22 H -0.236 1.236 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.165 0.835 27 H 0.166 0.834 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.386 0.614 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.275 22.217 -0.102 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.102 3.898 4 C -0.224 4.224 5 C -0.065 4.065 6 C -0.117 4.117 7 C -0.073 4.073 8 C -0.198 4.198 9 C -0.198 4.198 10 C -0.087 4.087 11 C -0.181 4.181 12 C 0.275 3.725 13 O -0.496 6.496 14 N -0.221 5.221 15 C -0.459 4.459 16 H 0.076 0.924 17 C -0.210 4.210 18 N -0.565 5.565 19 Si 0.775 3.225 20 H -0.175 1.175 21 H -0.188 1.188 22 H -0.160 1.160 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.182 0.818 27 H 0.184 0.816 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.223 0.777 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.342 21.151 -0.101 25.008 hybrid contribution 0.811 -0.326 -0.004 0.875 sum -12.530 20.825 -0.105 24.305 Atomic orbital electron populations 1.23413 0.76895 1.05113 1.02735 1.86405 1.23052 1.26870 1.87157 1.19348 0.90765 0.85838 0.93859 1.21487 1.01305 0.90793 1.08824 1.21260 0.93617 0.97649 0.93972 1.19936 0.94133 0.94669 1.02958 1.20145 0.99583 0.90245 0.97321 1.21854 1.02386 0.99851 0.95752 1.21854 1.02379 0.99778 0.95822 1.21177 0.99932 0.90342 0.97252 1.19505 0.91887 0.93433 1.13317 1.18382 0.82190 0.89422 0.82491 1.90633 1.72071 1.30985 1.55909 1.41931 1.05454 1.07751 1.66985 1.19054 0.89690 0.86759 1.50369 0.92412 1.26107 0.95873 1.03194 0.95838 1.69772 1.07175 1.30291 1.49242 0.85501 0.79139 0.77432 0.80432 1.17520 1.18844 1.16005 0.90768 0.90753 0.87863 0.81801 0.81633 0.90790 0.91265 0.90969 0.93581 0.93525 0.90977 0.91274 0.85566 0.77729 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.81 113.37 1.11 1.41 16 2 O -0.32 -12.73 8.57 -68.87 -0.59 -13.32 16 3 C 0.15 5.44 6.70 22.85 0.15 5.60 16 4 C -0.21 -5.02 9.03 22.34 0.20 -4.81 16 5 C -0.05 -0.95 8.69 22.31 0.19 -0.76 16 6 C -0.12 -2.79 4.78 -19.90 -0.10 -2.88 16 7 C -0.05 -0.96 3.09 -11.54 -0.04 -0.99 16 8 C -0.14 -1.98 9.01 71.98 0.65 -1.33 16 9 C -0.14 -1.96 9.00 71.98 0.65 -1.32 16 10 C -0.07 -2.21 9.15 22.53 0.21 -2.00 16 11 C -0.18 -7.37 5.89 -20.01 -0.12 -7.49 16 12 C 0.49 26.23 7.71 86.67 0.67 26.90 16 13 O -0.61 -38.71 14.73 16.79 0.25 -38.47 16 14 N -0.58 -31.07 5.03 -309.98 -1.56 -32.63 16 15 C -0.33 -20.68 10.16 84.09 0.85 -19.83 16 16 H 0.06 4.26 7.38 -2.91 -0.02 4.23 16 17 C -0.01 -0.61 5.50 84.95 0.47 -0.14 16 18 N -0.92 -57.10 13.95 21.68 0.30 -56.80 16 19 Si 0.96 40.37 27.74 68.60 1.90 42.28 16 20 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.24 -8.68 6.52 99.48 0.65 -8.03 16 23 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 24 H 0.07 1.38 7.65 -2.38 -0.02 1.37 16 25 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.16 2.76 6.30 -2.91 -0.02 2.74 16 27 H 0.17 1.98 7.07 -2.91 -0.02 1.96 16 28 H 0.07 1.36 7.86 -2.38 -0.02 1.35 16 29 H 0.07 0.78 7.37 -2.39 -0.02 0.76 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.07 0.78 7.37 -2.39 -0.02 0.76 16 35 H 0.13 3.92 6.28 -2.91 -0.02 3.90 16 36 H 0.39 17.50 3.79 -92.71 -0.35 17.15 16 37 H 0.28 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -83.86 307.05 5.88 -77.98 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.67 Total: 28.60 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.91 Total: -7.64 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -1.26 Total: -89.43 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.34 Total: -51.79 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.90 Total: 42.28 kcal Total: -83.86 5.88 -77.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082546423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.291 kcal (2) G-P(sol) polarization free energy of solvation -83.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds