Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 C 1.52996 * 109.47122 * 119.99884 * 2 1 3 5 5 H 1.09001 * 109.47758 * 300.00389 * 4 2 1 6 6 N 1.46504 * 109.47233 * 179.97438 * 4 2 1 7 7 C 1.38860 * 120.00084 * 154.99740 * 6 4 2 8 8 C 1.39571 * 119.83810 * 0.25432 * 7 6 4 9 9 C 1.36340 * 120.15390 * 180.25480 * 8 7 6 10 10 C 1.40882 * 119.84160 * 359.49213 * 9 8 7 11 11 C 1.41138 * 120.15882 * 180.27617 * 10 9 8 12 12 H 1.07996 * 119.99962 * 335.08524 * 11 10 9 13 13 C 1.39865 * 119.99771 * 155.08834 * 11 10 9 14 14 N 1.30901 * 120.00243 * 342.12506 * 13 11 10 15 15 Si 1.86802 * 119.99638 * 162.12643 * 13 11 10 16 16 H 1.48504 * 109.46804 * 94.65268 * 15 13 11 17 17 H 1.48507 * 109.47003 * 214.64709 * 15 13 11 18 18 H 1.48494 * 109.47401 * 334.65143 * 15 13 11 19 19 C 1.40887 * 119.68680 * 0.25971 * 10 9 8 20 20 C 1.36341 * 119.83842 * 359.97438 * 19 10 9 21 21 C 1.50707 * 109.46996 * 60.00343 * 4 2 1 22 22 O 1.20824 * 120.00117 * 120.00206 * 21 4 2 23 23 O 1.34225 * 119.99776 * 299.99519 * 21 4 2 24 24 H 1.08996 * 109.46777 * 299.99963 * 1 2 3 25 25 H 1.08998 * 109.47376 * 60.00325 * 1 2 3 26 26 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47346 * 239.99935 * 2 1 3 28 28 H 1.09001 * 109.47294 * 300.00054 * 3 2 1 29 29 H 1.09004 * 109.47133 * 59.99805 * 3 2 1 30 30 H 1.09003 * 109.46821 * 180.02562 * 3 2 1 31 31 H 0.96999 * 119.99746 * 335.00862 * 6 4 2 32 32 H 1.08001 * 119.92617 * 0.02562 * 8 7 6 33 33 H 1.08003 * 120.08120 * 179.77498 * 9 8 7 34 34 H 0.97004 * 119.99917 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.08308 * 180.02562 * 19 10 9 36 36 H 1.07997 * 119.92025 * 180.02562 * 20 19 10 37 37 H 0.96704 * 116.99711 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1393 6 7 3.5051 -0.7218 1.2489 7 6 4.1996 -0.8266 2.4468 8 6 3.4985 -0.9366 3.6486 9 6 4.1739 -1.0346 4.8290 10 6 5.5827 -1.0355 4.8326 11 6 6.2886 -1.1425 6.0500 12 1 5.8243 -0.8277 6.9729 13 6 7.5895 -1.6562 6.0613 14 7 8.0274 -2.3516 5.0424 15 14 8.7018 -1.3499 7.5304 16 1 8.6119 -2.4986 8.4673 17 1 10.1043 -1.1983 7.0662 18 1 8.2736 -0.1095 8.2255 19 6 6.2836 -0.9293 3.6150 20 6 5.5952 -0.8271 2.4426 21 6 1.5377 -2.1421 1.2492 22 8 2.3229 -3.0604 1.2492 23 8 0.2181 -2.3874 1.2492 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 3.9899 -0.6487 0.4120 32 1 2.4185 -0.9403 3.6440 33 1 3.6302 -1.1160 5.7586 34 1 8.9298 -2.7075 5.0501 35 1 7.3636 -0.9298 3.6103 36 1 6.1312 -0.7461 1.5085 37 1 -0.0561 -3.3147 1.2496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082711555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -74.159543 kcal Electronic energy + Delta-G solvation = -19752.124885 eV Core-core repulsion = 16686.828363 eV Total energy + Delta-G solvation = -3065.296522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29308 -37.99125 -36.48236 -35.89465 -34.01116 -32.37473 -29.67426 -28.72992 -27.54341 -26.57429 -24.19585 -21.97037 -21.40487 -20.27166 -19.69031 -17.90615 -17.22006 -16.72722 -16.18292 -15.54821 -15.25758 -14.89758 -14.03193 -13.71724 -13.64023 -12.97112 -12.95727 -12.62843 -12.38307 -12.18201 -11.97632 -11.85282 -11.52520 -11.45251 -11.14806 -10.98544 -10.87996 -10.75340 -10.68081 -10.53905 -10.20757 -9.68827 -9.31329 -9.29091 -8.63927 -7.49454 -6.66112 -6.44889 -4.04882 2.50665 2.86954 3.09999 3.13370 3.15355 3.21206 3.44342 4.05506 4.12275 4.63822 4.77219 4.85654 5.16634 5.35891 5.48246 5.57832 5.63784 5.82620 5.83140 5.89569 6.06862 6.21271 6.25122 6.28081 6.36056 6.71442 6.79858 7.02857 7.17925 7.28711 7.53304 7.64552 7.76286 8.14112 8.16533 8.31918 8.41854 8.58584 8.77006 9.05464 9.13503 10.37185 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036549 B = 0.004484 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.915219 B = 6242.792192 C = 6463.153259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C -0.142 4.142 4 C 0.181 3.819 5 H 0.110 0.890 6 N -0.729 5.729 7 C 0.089 3.911 8 C -0.154 4.154 9 C -0.189 4.189 10 C 0.079 3.921 11 C -0.467 4.467 12 H 0.073 0.927 13 C 0.075 3.925 14 N -0.805 5.805 15 Si 0.903 3.097 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.124 4.124 20 C -0.153 4.153 21 C 0.446 3.554 22 O -0.494 6.494 23 O -0.520 6.520 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.391 0.609 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.277 0.723 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 4.421 -9.041 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.114 4.114 3 C -0.199 4.199 4 C 0.070 3.930 5 H 0.128 0.872 6 N -0.364 5.364 7 C -0.007 4.007 8 C -0.176 4.176 9 C -0.210 4.210 10 C 0.076 3.924 11 C -0.498 4.498 12 H 0.091 0.909 13 C -0.141 4.141 14 N -0.432 5.432 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.144 4.144 20 C -0.175 4.175 21 C 0.284 3.716 22 O -0.379 6.379 23 O -0.332 6.332 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -10.854 4.433 -9.001 14.781 hybrid contribution 0.581 -0.851 0.390 1.102 sum -10.273 3.581 -8.612 13.875 Atomic orbital electron populations 1.22035 0.93622 1.03867 1.01809 1.21257 0.96983 0.97006 0.96179 1.21785 1.01960 0.94349 1.01804 1.20300 0.84094 0.87595 1.01016 0.87241 1.43633 1.01105 1.84773 1.06849 1.17259 0.90756 1.08069 0.84626 1.19810 0.96369 1.09185 0.92247 1.20527 0.94489 1.10521 0.95432 1.17501 0.90646 0.90902 0.93323 1.19377 0.98024 1.37885 0.94465 0.90881 1.25809 0.98446 0.92746 0.97056 1.69864 1.17693 1.24975 1.30689 0.86402 0.79312 0.79722 0.81814 1.19846 1.20250 1.18629 1.20912 0.99669 1.02523 0.91323 1.20000 0.91309 1.08522 0.97627 1.25241 0.79563 0.94682 0.72079 1.90735 1.56724 1.46702 1.43746 1.84685 1.27263 1.35289 1.85982 0.92262 0.92601 0.90184 0.90864 0.92591 0.92219 0.91766 0.77463 0.90049 0.89077 0.91267 0.86273 0.89375 0.74620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.67 37.16 0.32 -1.13 16 2 C -0.09 -1.04 2.54 -90.62 -0.23 -1.27 16 3 C -0.14 -1.45 9.04 37.16 0.34 -1.11 16 4 C 0.18 2.63 1.79 -69.08 -0.12 2.51 16 5 H 0.11 1.63 6.46 -51.93 -0.34 1.29 16 6 N -0.73 -12.70 4.04 -53.15 -0.21 -12.92 16 7 C 0.09 1.96 6.55 -83.69 -0.55 1.41 16 8 C -0.15 -3.55 9.06 -39.77 -0.36 -3.91 16 9 C -0.19 -4.80 9.74 -39.27 -0.38 -5.18 16 10 C 0.08 2.17 5.57 -106.79 -0.59 1.58 16 11 C -0.47 -12.82 9.03 -37.87 -0.34 -13.17 16 12 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 13 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 14 N -0.81 -21.72 10.98 55.54 0.61 -21.11 16 15 Si 0.90 19.36 29.59 -169.99 -5.03 14.33 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 19 C -0.12 -3.30 8.63 -39.26 -0.34 -3.64 16 20 C -0.15 -3.63 9.82 -39.77 -0.39 -4.02 16 21 C 0.45 7.00 7.43 36.01 0.27 7.27 16 22 O -0.49 -10.02 17.11 -18.75 -0.32 -10.34 16 23 O -0.52 -6.01 10.34 -39.24 -0.41 -6.41 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.78 5.33 -51.93 -0.28 0.50 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 31 H 0.39 6.20 8.39 -40.82 -0.34 5.86 16 32 H 0.08 1.68 6.14 -52.49 -0.32 1.36 16 33 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 34 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 35 H 0.12 3.26 6.18 -52.49 -0.32 2.94 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.40 3.14 9.10 45.56 0.41 3.55 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -31.49 308.46 -7.27 -38.76 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -4.08 Total: 11.85 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.48 Total: -18.80 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.39 Total: -34.03 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.73 Total: -16.76 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.49 -7.27 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082711555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.399 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds