Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 C 1.52996 * 109.47122 * 119.99884 * 2 1 3 5 5 H 1.09001 * 109.47758 * 300.00389 * 4 2 1 6 6 N 1.46504 * 109.47233 * 179.97438 * 4 2 1 7 7 C 1.38860 * 120.00084 * 154.99740 * 6 4 2 8 8 C 1.39571 * 119.83810 * 0.25432 * 7 6 4 9 9 C 1.36340 * 120.15390 * 180.25480 * 8 7 6 10 10 C 1.40882 * 119.84160 * 359.49213 * 9 8 7 11 11 C 1.41138 * 120.15882 * 180.27617 * 10 9 8 12 12 H 1.07996 * 119.99962 * 335.08524 * 11 10 9 13 13 C 1.39865 * 119.99771 * 155.08834 * 11 10 9 14 14 N 1.30901 * 120.00243 * 342.12506 * 13 11 10 15 15 Si 1.86802 * 119.99638 * 162.12643 * 13 11 10 16 16 H 1.48504 * 109.46804 * 94.65268 * 15 13 11 17 17 H 1.48507 * 109.47003 * 214.64709 * 15 13 11 18 18 H 1.48494 * 109.47401 * 334.65143 * 15 13 11 19 19 C 1.40887 * 119.68680 * 0.25971 * 10 9 8 20 20 C 1.36341 * 119.83842 * 359.97438 * 19 10 9 21 21 C 1.50707 * 109.46996 * 60.00343 * 4 2 1 22 22 O 1.20824 * 120.00117 * 120.00206 * 21 4 2 23 23 O 1.34225 * 119.99776 * 299.99519 * 21 4 2 24 24 H 1.08996 * 109.46777 * 299.99963 * 1 2 3 25 25 H 1.08998 * 109.47376 * 60.00325 * 1 2 3 26 26 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47346 * 239.99935 * 2 1 3 28 28 H 1.09001 * 109.47294 * 300.00054 * 3 2 1 29 29 H 1.09004 * 109.47133 * 59.99805 * 3 2 1 30 30 H 1.09003 * 109.46821 * 180.02562 * 3 2 1 31 31 H 0.96999 * 119.99746 * 335.00862 * 6 4 2 32 32 H 1.08001 * 119.92617 * 0.02562 * 8 7 6 33 33 H 1.08003 * 120.08120 * 179.77498 * 9 8 7 34 34 H 0.97004 * 119.99917 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.08308 * 180.02562 * 19 10 9 36 36 H 1.07997 * 119.92025 * 180.02562 * 20 19 10 37 37 H 0.96704 * 116.99711 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1393 6 7 3.5051 -0.7218 1.2489 7 6 4.1996 -0.8266 2.4468 8 6 3.4985 -0.9366 3.6486 9 6 4.1739 -1.0346 4.8290 10 6 5.5827 -1.0355 4.8326 11 6 6.2886 -1.1425 6.0500 12 1 5.8243 -0.8277 6.9729 13 6 7.5895 -1.6562 6.0613 14 7 8.0274 -2.3516 5.0424 15 14 8.7018 -1.3499 7.5304 16 1 8.6119 -2.4986 8.4673 17 1 10.1043 -1.1983 7.0662 18 1 8.2736 -0.1095 8.2255 19 6 6.2836 -0.9293 3.6150 20 6 5.5952 -0.8271 2.4426 21 6 1.5377 -2.1421 1.2492 22 8 2.3229 -3.0604 1.2492 23 8 0.2181 -2.3874 1.2492 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 3.9899 -0.6487 0.4120 32 1 2.4185 -0.9403 3.6440 33 1 3.6302 -1.1160 5.7586 34 1 8.9298 -2.7075 5.0501 35 1 7.3636 -0.9298 3.6103 36 1 6.1312 -0.7461 1.5085 37 1 -0.0561 -3.3147 1.2496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082711555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -93.972507 kcal Electronic energy + Delta-G solvation = -19752.984040 eV Core-core repulsion = 16686.828363 eV Total energy + Delta-G solvation = -3066.155676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54811 -39.69413 -37.79528 -37.09853 -35.68335 -33.98902 -31.52704 -30.51019 -28.64876 -27.71631 -25.97431 -23.31738 -22.97356 -21.96758 -20.97133 -19.17562 -19.06852 -18.01224 -17.66607 -17.13959 -16.58516 -16.46733 -15.71754 -14.87976 -14.76696 -14.57462 -14.54485 -13.99210 -13.75046 -13.69357 -13.49280 -13.17919 -12.90033 -12.77932 -12.72077 -12.60154 -12.34990 -11.99607 -11.68886 -11.64976 -11.62690 -11.52833 -11.21960 -11.07550 -10.42849 -9.43525 -8.58085 -8.26405 -6.04716 1.06842 1.14523 1.27224 1.39863 1.51734 1.57071 2.10310 2.27043 2.76723 2.84261 3.64824 3.81986 3.93131 4.22958 4.31840 4.42493 4.44423 4.51538 4.67108 4.91178 4.95777 5.06557 5.12344 5.13651 5.25090 5.27134 5.37434 5.45816 5.59677 5.65169 5.69080 5.71684 5.87084 6.15632 6.36114 6.58920 6.78924 7.00255 7.06069 7.10120 7.21072 8.46708 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036549 B = 0.004484 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.915219 B = 6242.792192 C = 6463.153259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.140 4.140 4 C 0.174 3.826 5 H 0.112 0.888 6 N -0.722 5.722 7 C 0.113 3.887 8 C -0.163 4.163 9 C -0.200 4.200 10 C 0.040 3.960 11 C -0.506 4.506 12 H 0.069 0.931 13 C 0.032 3.968 14 N -0.842 5.842 15 Si 0.978 3.022 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.143 4.143 20 C -0.166 4.166 21 C 0.454 3.546 22 O -0.547 6.547 23 O -0.501 6.501 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.401 0.599 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.283 0.717 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 5.166 -10.094 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.129 0.871 6 N -0.356 5.356 7 C 0.014 3.986 8 C -0.185 4.185 9 C -0.220 4.220 10 C 0.037 3.963 11 C -0.537 4.537 12 H 0.087 0.913 13 C -0.180 4.180 14 N -0.470 5.470 15 Si 0.799 3.201 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.183 1.183 19 C -0.163 4.163 20 C -0.188 4.188 21 C 0.295 3.705 22 O -0.436 6.436 23 O -0.314 6.314 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.236 0.764 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -12.539 5.185 -10.098 16.914 hybrid contribution 0.837 -1.079 0.541 1.469 sum -11.702 4.106 -9.557 15.657 Atomic orbital electron populations 1.22020 0.91973 1.03998 1.02984 1.21257 0.98143 0.96879 0.94192 1.21783 1.01156 0.93957 1.02852 1.20629 0.82148 0.87596 1.03199 0.87096 1.43636 1.02629 1.83746 1.05626 1.17338 0.90491 1.04588 0.86151 1.20044 0.97715 1.08955 0.91790 1.20729 0.94073 1.10508 0.96698 1.17828 0.91826 0.92741 0.93902 1.19613 0.99667 1.39874 0.94533 0.91250 1.26650 0.99363 0.91818 1.00178 1.69930 1.18367 1.25878 1.32808 0.85263 0.77254 0.79623 0.77911 1.19117 1.19191 1.18295 1.20863 0.99063 1.03995 0.92337 1.20219 0.92390 1.08588 0.97616 1.25229 0.80258 0.94320 0.70660 1.90737 1.58215 1.48156 1.46479 1.84627 1.24769 1.37124 1.84870 0.92000 0.90604 0.90501 0.90301 0.90362 0.92419 0.93028 0.76377 0.87500 0.88624 0.90686 0.88059 0.87267 0.72300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.67 71.98 0.62 -1.64 16 2 C -0.09 -1.59 2.54 -10.79 -0.03 -1.62 16 3 C -0.14 -2.43 9.04 71.98 0.65 -1.78 16 4 C 0.17 4.64 1.79 44.25 0.08 4.72 16 5 H 0.11 3.00 6.46 -2.39 -0.02 2.98 16 6 N -0.72 -23.95 4.04 -322.07 -1.30 -25.25 16 7 C 0.11 4.89 6.55 38.67 0.25 5.15 16 8 C -0.16 -7.43 9.06 22.15 0.20 -7.23 16 9 C -0.20 -10.34 9.74 22.47 0.22 -10.12 16 10 C 0.04 2.27 5.57 -21.27 -0.12 2.15 16 11 C -0.51 -28.92 9.03 23.38 0.21 -28.70 16 12 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 13 C 0.03 1.71 5.13 85.23 0.44 2.15 16 14 N -0.84 -46.95 10.98 21.82 0.24 -46.71 16 15 Si 0.98 40.55 29.59 68.60 2.03 42.58 16 16 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 19 C -0.14 -7.84 8.63 22.48 0.19 -7.65 16 20 C -0.17 -7.95 9.82 22.15 0.22 -7.73 16 21 C 0.45 13.26 7.43 71.24 0.53 13.79 16 22 O -0.55 -21.52 17.11 21.97 0.38 -21.14 16 23 O -0.50 -10.03 10.34 -51.37 -0.53 -10.56 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.20 5.33 -2.39 -0.01 1.19 16 27 H 0.08 1.42 8.14 -2.38 -0.02 1.41 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 31 H 0.40 11.94 8.39 -92.71 -0.78 11.17 16 32 H 0.11 4.23 6.14 -2.91 -0.02 4.22 16 33 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 35 H 0.10 5.83 6.18 -2.91 -0.02 5.82 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.42 5.31 9.10 -74.05 -0.67 4.64 16 Total: -1.00 -70.24 308.46 3.93 -66.30 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.35 Total: 33.30 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 3.47 Total: -38.52 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.06 Total: -71.96 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.16 Total: -31.70 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -70.24 3.93 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082711555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.668 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds