Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47492 * 120.00495 * 2 1 3 5 5 H 1.09000 * 109.47206 * 59.99542 * 4 2 1 6 6 N 1.46495 * 109.47135 * 180.02562 * 4 2 1 7 7 C 1.38861 * 119.99746 * 205.00304 * 6 4 2 8 8 C 1.39564 * 119.84585 * 359.72045 * 7 6 4 9 9 C 1.36338 * 120.16458 * 179.72001 * 8 7 6 10 10 C 1.40888 * 119.83068 * 0.55483 * 9 8 7 11 11 C 1.41137 * 120.15246 * 179.69303 * 10 9 8 12 12 H 1.07998 * 120.00577 * 204.63417 * 11 10 9 13 13 C 1.39868 * 119.99753 * 24.63458 * 11 10 9 14 14 N 1.30905 * 120.00365 * 17.95485 * 13 11 10 15 15 Si 1.86806 * 120.00003 * 197.95254 * 13 11 10 16 16 H 1.48493 * 109.47289 * 90.00239 * 15 13 11 17 17 H 1.48503 * 109.46935 * 210.00452 * 15 13 11 18 18 H 1.48502 * 109.46825 * 329.99766 * 15 13 11 19 19 C 1.40886 * 119.69388 * 359.72401 * 10 9 8 20 20 C 1.36336 * 119.83350 * 359.97438 * 19 10 9 21 21 C 1.50699 * 109.46952 * 299.99903 * 4 2 1 22 22 O 1.20820 * 119.99925 * 240.00128 * 21 4 2 23 23 O 1.34230 * 120.00009 * 59.72493 * 21 4 2 24 24 H 1.08995 * 109.46705 * 299.99399 * 1 2 3 25 25 H 1.08994 * 109.46934 * 59.99505 * 1 2 3 26 26 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47041 * 240.00541 * 2 1 3 28 28 H 1.08995 * 109.46946 * 60.00748 * 3 2 1 29 29 H 1.09001 * 109.46740 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47284 * 300.00518 * 3 2 1 31 31 H 0.96994 * 120.00376 * 24.99582 * 6 4 2 32 32 H 1.08009 * 119.91495 * 359.97438 * 8 7 6 33 33 H 1.07994 * 120.08071 * 180.27425 * 9 8 7 34 34 H 0.96993 * 120.00622 * 179.97438 * 14 13 11 35 35 H 1.07998 * 120.07930 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.92009 * 179.97438 * 20 19 10 37 37 H 0.96697 * 117.00076 * 180.27726 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -1.7490 1.2491 6 7 3.5051 -0.7207 1.2493 7 6 4.1996 -1.7058 1.9390 8 6 3.4988 -2.6914 2.6356 9 6 4.1741 -3.6649 3.3101 10 6 5.5830 -3.6675 3.3124 11 6 6.2889 -4.6683 4.0139 12 1 7.2951 -4.4792 4.3577 13 6 5.6854 -5.9051 4.2636 14 7 4.6377 -6.2740 3.5709 15 14 6.3745 -7.0306 5.5858 16 1 5.7192 -6.7287 6.8837 17 1 6.1137 -8.4452 5.2168 18 1 7.8384 -6.8127 5.7076 19 6 6.2839 -2.6660 2.6119 20 6 5.5953 -1.7024 1.9366 21 6 1.5378 -0.0110 2.4796 22 8 2.3230 0.4481 3.2749 23 8 0.2182 0.1164 2.6893 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.6768 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.9899 -0.0324 0.7678 32 1 2.4187 -2.6852 2.6368 33 1 3.6304 -4.4295 3.8450 34 1 4.2194 -7.1318 3.7439 35 1 7.3638 -2.6623 2.6092 36 1 6.1312 -0.9338 1.3995 37 1 -0.0560 0.5834 3.4905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082711556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = -72.881926 kcal Electronic energy + Delta-G solvation = -19851.313554 eV Core-core repulsion = 16786.072433 eV Total energy + Delta-G solvation = -3065.241120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37137 -37.96769 -36.46851 -35.87249 -34.02688 -32.38843 -29.52297 -28.88260 -27.47202 -26.61113 -24.19665 -22.37448 -21.31751 -20.37658 -19.39367 -17.74803 -17.22701 -16.90717 -16.08899 -15.51917 -15.15525 -14.96061 -14.14175 -13.85232 -13.51232 -13.18914 -12.92785 -12.60079 -12.57623 -12.17280 -12.01011 -11.77805 -11.51362 -11.29934 -11.11856 -11.04275 -10.87849 -10.82232 -10.65828 -10.55547 -10.19644 -9.70989 -9.31409 -9.26298 -8.65047 -7.50055 -6.66519 -6.45932 -4.05188 2.53120 2.86763 3.10076 3.14518 3.16809 3.19115 3.45113 4.05250 4.13166 4.64512 4.77213 4.84944 5.00462 5.39877 5.51967 5.54047 5.62278 5.79219 5.82062 5.86366 5.93634 6.15591 6.23033 6.29665 6.40554 6.72495 6.83460 6.90508 7.18767 7.34455 7.49231 7.67269 7.80174 8.12751 8.16267 8.27150 8.44099 8.60438 8.76480 9.05217 9.13231 10.36441 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032883 B = 0.004699 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.293201 B = 5957.404675 C = 6230.115143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.151 4.151 4 C 0.179 3.821 5 H 0.111 0.889 6 N -0.730 5.730 7 C 0.088 3.912 8 C -0.159 4.159 9 C -0.125 4.125 10 C 0.078 3.922 11 C -0.466 4.466 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.807 5.807 15 Si 0.904 3.096 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.264 1.264 19 C -0.188 4.188 20 C -0.149 4.149 21 C 0.451 3.549 22 O -0.497 6.497 23 O -0.520 6.520 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.391 0.609 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.276 0.724 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 9.641 -5.808 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.115 4.115 3 C -0.208 4.208 4 C 0.068 3.932 5 H 0.128 0.872 6 N -0.366 5.366 7 C -0.008 4.008 8 C -0.181 4.181 9 C -0.145 4.145 10 C 0.075 3.925 11 C -0.497 4.497 12 H 0.092 0.908 13 C -0.140 4.140 14 N -0.434 5.434 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.208 4.208 20 C -0.170 4.170 21 C 0.290 3.710 22 O -0.382 6.382 23 O -0.332 6.332 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.226 0.774 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.821 9.265 -5.913 14.093 hybrid contribution 0.271 -0.030 1.080 1.114 sum -8.550 9.235 -4.833 13.481 Atomic orbital electron populations 1.22052 0.93592 1.02849 1.02950 1.21320 0.97064 0.96378 0.96754 1.21895 1.01395 0.95624 1.01923 1.20296 0.84082 0.99846 0.88935 0.87160 1.43682 1.01182 1.32288 1.59447 1.17274 0.90705 0.91988 1.00850 1.20032 0.96684 0.97662 1.03702 1.20905 0.94652 0.97883 1.01041 1.17507 0.91809 0.91983 0.91163 1.19398 1.01177 0.96998 1.32130 0.90830 1.25805 0.94424 0.98456 0.95344 1.69850 1.19170 1.20621 1.33752 0.86393 0.80329 0.78779 0.81618 1.19531 1.20547 1.18816 1.20543 0.97564 0.99431 1.03255 1.19771 0.91446 1.00824 1.04991 1.25132 0.79533 0.77521 0.88835 1.90711 1.56736 1.44805 1.45975 1.84695 1.27285 1.73579 1.47595 0.90080 0.92578 0.92222 0.89143 0.92917 0.92249 0.91998 0.77423 0.89976 0.86355 0.91283 0.88892 0.89441 0.74695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.67 37.16 0.32 -1.19 16 2 C -0.10 -1.07 2.91 -90.62 -0.26 -1.33 16 3 C -0.15 -1.58 8.77 37.16 0.33 -1.25 16 4 C 0.18 2.68 2.04 -69.09 -0.14 2.54 16 5 H 0.11 1.73 6.46 -51.93 -0.34 1.39 16 6 N -0.73 -12.87 4.65 -53.16 -0.25 -13.12 16 7 C 0.09 1.95 6.55 -83.69 -0.55 1.40 16 8 C -0.16 -3.82 9.06 -39.77 -0.36 -4.18 16 9 C -0.12 -3.34 8.64 -39.26 -0.34 -3.68 16 10 C 0.08 2.15 5.57 -106.79 -0.60 1.56 16 11 C -0.47 -12.82 9.03 -37.87 -0.34 -13.16 16 12 H 0.07 1.96 7.91 -52.49 -0.41 1.54 16 13 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 14 N -0.81 -21.52 10.96 55.54 0.61 -20.91 16 15 Si 0.90 19.42 29.60 -169.99 -5.03 14.39 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 19 C -0.19 -4.73 9.74 -39.27 -0.38 -5.12 16 20 C -0.15 -3.41 9.82 -39.77 -0.39 -3.80 16 21 C 0.45 7.08 6.17 36.01 0.22 7.31 16 22 O -0.50 -9.85 17.11 -18.75 -0.32 -10.17 16 23 O -0.52 -6.10 10.33 -39.26 -0.41 -6.51 16 24 H 0.08 0.81 5.31 -51.93 -0.28 0.53 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 29 H 0.06 0.64 6.51 -51.93 -0.34 0.30 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.39 6.17 6.86 -40.82 -0.28 5.89 16 32 H 0.08 1.80 6.14 -52.48 -0.32 1.48 16 33 H 0.12 3.28 6.16 -52.49 -0.32 2.95 16 34 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 35 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.39 3.18 9.10 45.56 0.41 3.60 16 LS Contribution 304.73 15.07 4.59 4.59 Total: -1.00 -31.24 304.73 -7.31 -38.54 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -3.92 Total: 12.23 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.58 Total: -19.04 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.36 Total: -34.03 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.73 Total: -16.68 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.24 -7.31 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082711556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.337 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds