Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47492 * 120.00495 * 2 1 3 5 5 H 1.09000 * 109.47206 * 59.99542 * 4 2 1 6 6 N 1.46495 * 109.47135 * 180.02562 * 4 2 1 7 7 C 1.38861 * 119.99746 * 205.00304 * 6 4 2 8 8 C 1.39564 * 119.84585 * 359.72045 * 7 6 4 9 9 C 1.36338 * 120.16458 * 179.72001 * 8 7 6 10 10 C 1.40888 * 119.83068 * 0.55483 * 9 8 7 11 11 C 1.41137 * 120.15246 * 179.69303 * 10 9 8 12 12 H 1.07998 * 120.00577 * 204.63417 * 11 10 9 13 13 C 1.39868 * 119.99753 * 24.63458 * 11 10 9 14 14 N 1.30905 * 120.00365 * 17.95485 * 13 11 10 15 15 Si 1.86806 * 120.00003 * 197.95254 * 13 11 10 16 16 H 1.48493 * 109.47289 * 90.00239 * 15 13 11 17 17 H 1.48503 * 109.46935 * 210.00452 * 15 13 11 18 18 H 1.48502 * 109.46825 * 329.99766 * 15 13 11 19 19 C 1.40886 * 119.69388 * 359.72401 * 10 9 8 20 20 C 1.36336 * 119.83350 * 359.97438 * 19 10 9 21 21 C 1.50699 * 109.46952 * 299.99903 * 4 2 1 22 22 O 1.20820 * 119.99925 * 240.00128 * 21 4 2 23 23 O 1.34230 * 120.00009 * 59.72493 * 21 4 2 24 24 H 1.08995 * 109.46705 * 299.99399 * 1 2 3 25 25 H 1.08994 * 109.46934 * 59.99505 * 1 2 3 26 26 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47041 * 240.00541 * 2 1 3 28 28 H 1.08995 * 109.46946 * 60.00748 * 3 2 1 29 29 H 1.09001 * 109.46740 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47284 * 300.00518 * 3 2 1 31 31 H 0.96994 * 120.00376 * 24.99582 * 6 4 2 32 32 H 1.08009 * 119.91495 * 359.97438 * 8 7 6 33 33 H 1.07994 * 120.08071 * 180.27425 * 9 8 7 34 34 H 0.96993 * 120.00622 * 179.97438 * 14 13 11 35 35 H 1.07998 * 120.07930 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.92009 * 179.97438 * 20 19 10 37 37 H 0.96697 * 117.00076 * 180.27726 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -1.7490 1.2491 6 7 3.5051 -0.7207 1.2493 7 6 4.1996 -1.7058 1.9390 8 6 3.4988 -2.6914 2.6356 9 6 4.1741 -3.6649 3.3101 10 6 5.5830 -3.6675 3.3124 11 6 6.2889 -4.6683 4.0139 12 1 7.2951 -4.4792 4.3577 13 6 5.6854 -5.9051 4.2636 14 7 4.6377 -6.2740 3.5709 15 14 6.3745 -7.0306 5.5858 16 1 5.7192 -6.7287 6.8837 17 1 6.1137 -8.4452 5.2168 18 1 7.8384 -6.8127 5.7076 19 6 6.2839 -2.6660 2.6119 20 6 5.5953 -1.7024 1.9366 21 6 1.5378 -0.0110 2.4796 22 8 2.3230 0.4481 3.2749 23 8 0.2182 0.1164 2.6893 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.6768 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.9899 -0.0324 0.7678 32 1 2.4187 -2.6852 2.6368 33 1 3.6304 -4.4295 3.8450 34 1 4.2194 -7.1318 3.7439 35 1 7.3638 -2.6623 2.6092 36 1 6.1312 -0.9338 1.3995 37 1 -0.0560 0.5834 3.4905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082711556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = -92.528063 kcal Electronic energy + Delta-G solvation = -19852.165474 eV Core-core repulsion = 16786.072433 eV Total energy + Delta-G solvation = -3066.093041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.62265 -39.68441 -37.78203 -37.08231 -35.70752 -34.00385 -31.42732 -30.61046 -28.50799 -27.85381 -25.97253 -23.56098 -23.11532 -22.02763 -20.66914 -19.19379 -18.94230 -18.32532 -17.47429 -16.92466 -16.70328 -16.48433 -15.65304 -15.11334 -14.79198 -14.62551 -14.42263 -14.18619 -13.86743 -13.65461 -13.52916 -13.28767 -12.84523 -12.76863 -12.72684 -12.47326 -12.31658 -12.00851 -11.81172 -11.73739 -11.59998 -11.50339 -11.20571 -11.06778 -10.43802 -9.44157 -8.58098 -8.27628 -6.04754 1.05913 1.15216 1.29023 1.39509 1.52170 1.55349 2.11219 2.26406 2.75223 2.85308 3.64805 3.82655 3.88974 4.12586 4.32190 4.38811 4.46622 4.52614 4.64053 4.84912 4.92589 5.00493 5.04535 5.08536 5.17712 5.24486 5.35548 5.42156 5.60701 5.61270 5.67247 5.75628 5.90587 6.15615 6.32857 6.57863 6.78446 7.01885 7.05864 7.10651 7.21250 8.46284 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032883 B = 0.004699 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.293201 B = 5957.404675 C = 6230.115143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 C -0.150 4.150 4 C 0.170 3.830 5 H 0.105 0.895 6 N -0.723 5.723 7 C 0.109 3.891 8 C -0.170 4.170 9 C -0.146 4.146 10 C 0.039 3.961 11 C -0.506 4.506 12 H 0.069 0.931 13 C 0.033 3.967 14 N -0.839 5.839 15 Si 0.977 3.023 16 H -0.266 1.266 17 H -0.268 1.268 18 H -0.260 1.260 19 C -0.197 4.197 20 C -0.158 4.158 21 C 0.459 3.541 22 O -0.544 6.544 23 O -0.503 6.503 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.402 0.598 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.283 0.717 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 10.708 -6.824 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.123 0.877 6 N -0.358 5.358 7 C 0.010 3.990 8 C -0.192 4.192 9 C -0.166 4.166 10 C 0.036 3.964 11 C -0.537 4.537 12 H 0.087 0.913 13 C -0.179 4.179 14 N -0.467 5.467 15 Si 0.799 3.201 16 H -0.191 1.191 17 H -0.193 1.193 18 H -0.184 1.184 19 C -0.217 4.217 20 C -0.179 4.179 21 C 0.300 3.700 22 O -0.433 6.433 23 O -0.316 6.316 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.239 0.761 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.914 10.375 -6.961 15.949 hybrid contribution 0.441 -0.185 1.283 1.369 sum -9.473 10.190 -5.678 15.026 Atomic orbital electron populations 1.22042 0.92136 1.03155 1.03819 1.21337 0.98120 0.96397 0.94785 1.21901 1.01073 0.95113 1.02621 1.20603 0.82400 1.00229 0.90725 0.87729 1.43676 1.02565 1.31265 1.58336 1.17382 0.90889 0.91740 0.98959 1.20174 0.97576 0.97656 1.03814 1.20837 0.94693 0.98669 1.02391 1.17837 0.92473 0.93310 0.92749 1.19616 1.01552 0.98323 1.34197 0.91323 1.26618 0.94703 0.99536 0.97055 1.69908 1.20382 1.21426 1.34997 0.85286 0.79573 0.76930 0.78354 1.19113 1.19290 1.18412 1.20768 0.98160 0.99548 1.03213 1.20098 0.92024 1.01027 1.04789 1.25060 0.80214 0.76517 0.88172 1.90708 1.58081 1.47058 1.47461 1.84637 1.24956 1.73265 1.48717 0.90476 0.90417 0.92232 0.88070 0.93968 0.92773 0.89539 0.76078 0.88434 0.88282 0.90645 0.88231 0.86224 0.72388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.67 71.98 0.62 -1.82 16 2 C -0.09 -1.68 2.91 -10.79 -0.03 -1.71 16 3 C -0.15 -2.67 8.77 71.98 0.63 -2.04 16 4 C 0.17 4.76 2.04 44.24 0.09 4.85 16 5 H 0.11 3.10 6.46 -2.39 -0.02 3.09 16 6 N -0.72 -24.19 4.65 -322.10 -1.50 -25.69 16 7 C 0.11 4.75 6.55 38.67 0.25 5.00 16 8 C -0.17 -8.24 9.06 22.15 0.20 -8.04 16 9 C -0.15 -8.09 8.64 22.48 0.19 -7.90 16 10 C 0.04 2.23 5.57 -21.27 -0.12 2.11 16 11 C -0.51 -28.93 9.03 23.38 0.21 -28.72 16 12 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 13 C 0.03 1.77 5.13 85.23 0.44 2.20 16 14 N -0.84 -46.15 10.96 21.82 0.24 -45.91 16 15 Si 0.98 40.59 29.60 68.60 2.03 42.62 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 C -0.20 -10.09 9.74 22.47 0.22 -9.87 16 20 C -0.16 -7.11 9.82 22.15 0.22 -6.89 16 21 C 0.46 13.67 6.17 71.24 0.44 14.11 16 22 O -0.54 -21.05 17.11 21.98 0.38 -20.68 16 23 O -0.50 -10.62 10.33 -51.41 -0.53 -11.15 16 24 H 0.08 1.29 5.31 -2.39 -0.01 1.28 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 0.84 7.22 -2.39 -0.02 0.83 16 29 H 0.05 1.02 6.51 -2.39 -0.02 1.00 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.40 11.74 6.86 -92.71 -0.64 11.10 16 32 H 0.10 4.29 6.14 -2.91 -0.02 4.27 16 33 H 0.10 5.77 6.16 -2.91 -0.02 5.75 16 34 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 35 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.42 5.66 9.10 -74.06 -0.67 4.99 16 Total: -1.00 -69.52 304.73 3.78 -65.74 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.20 Total: 33.80 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 3.37 Total: -38.72 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.26 Total: -71.60 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.15 Total: -31.83 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -69.52 3.78 -65.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082711556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.789 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds