Wall clock time and date at job start Mon Mar 30 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35990 * 116.99865 * 2 1 4 4 C 1.38443 * 120.12450 * 0.02562 * 3 2 1 5 5 C 1.38988 * 120.07030 * 179.97438 * 4 3 2 6 6 C 1.38610 * 120.14507 * 0.13422 * 5 4 3 7 7 C 1.38594 * 119.68510 * 359.79079 * 6 5 4 8 8 C 1.38383 * 120.34164 * 0.13777 * 7 6 5 9 9 O 1.36092 * 120.00134 * 179.97438 * 8 7 6 10 10 C 1.42903 * 117.00036 * 0.02562 * 9 8 7 11 11 C 1.50626 * 121.47526 * 179.57056 * 6 5 4 12 12 H 1.09004 * 109.26630 * 260.49114 * 11 6 5 13 13 C 1.50698 * 109.27158 * 140.98604 * 11 6 5 14 14 H 1.08001 * 119.99313 * 324.87516 * 13 11 6 15 15 C 1.37874 * 120.00143 * 144.87399 * 13 11 6 16 16 N 1.31516 * 120.00032 * 5.08642 * 15 13 11 17 17 Si 1.86797 * 120.00006 * 185.09072 * 15 13 11 18 18 H 1.48501 * 109.47180 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47252 * 119.99588 * 17 15 13 20 20 H 1.48498 * 109.47061 * 239.99792 * 17 15 13 21 21 C 1.52840 * 110.50592 * 20.75094 * 11 6 5 22 22 C 1.53435 * 108.84851 * 308.52962 * 21 11 6 23 23 N 1.40198 * 119.04895 * 180.18744 * 5 4 3 24 24 H 1.09003 * 109.47476 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46817 * 300.00151 * 1 2 3 26 26 H 1.08999 * 109.47264 * 59.99610 * 1 2 3 27 27 H 1.07996 * 119.96586 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.83293 * 180.16664 * 7 6 5 29 29 H 1.09000 * 109.47272 * 179.97438 * 10 9 8 30 30 H 1.09005 * 109.47062 * 300.00063 * 10 9 8 31 31 H 1.09003 * 109.47058 * 59.99592 * 10 9 8 32 32 H 0.96994 * 119.99941 * 180.02562 * 16 15 13 33 33 H 1.09000 * 109.57235 * 68.34131 * 21 11 6 34 34 H 1.09005 * 109.57783 * 188.59286 * 21 11 6 35 35 H 1.08999 * 109.79494 * 303.67479 * 22 21 11 36 36 H 1.08994 * 109.79686 * 182.81929 * 22 21 11 37 37 H 0.96997 * 120.53941 * 13.10736 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2949 2.3744 0.0005 5 6 1.9270 3.6122 0.0011 6 6 3.3111 3.6870 -0.0017 7 6 4.0614 2.5217 -0.0007 8 6 3.4357 1.2874 0.0003 9 8 4.1793 0.1476 0.0008 10 6 5.6002 0.2999 0.0008 11 6 4.0271 5.0121 -0.0109 12 1 4.3459 5.2417 -1.0277 13 6 5.2375 4.9297 0.8831 14 1 5.2033 4.3360 1.7846 15 6 6.3883 5.6120 0.5500 16 7 6.3991 6.4137 -0.4925 17 14 7.9322 5.3977 1.5794 18 1 7.6599 4.4486 2.6886 19 1 9.0250 4.8637 0.7275 20 1 8.3390 6.7109 2.1409 21 6 3.1047 6.1226 0.4913 22 6 1.7864 6.0638 -0.2916 23 7 1.1451 4.7759 0.0056 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2163 2.3195 0.0014 28 1 5.1400 2.5772 -0.0001 29 1 6.0710 -0.6832 0.0017 30 1 5.9067 0.8492 -0.8894 31 1 5.9066 0.8499 0.8906 32 1 7.2088 6.8934 -0.7270 33 1 2.9054 5.9794 1.5533 34 1 3.5808 7.0908 0.3364 35 1 1.9881 6.1380 -1.3602 36 1 1.1356 6.8809 0.0195 37 1 0.1954 4.7308 0.1978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084035600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:12 Heat of formation + Delta-G solvation = -49.709506 kcal Electronic energy + Delta-G solvation = -20324.519201 eV Core-core repulsion = 17260.282912 eV Total energy + Delta-G solvation = -3064.236289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00716 -37.98051 -37.77121 -34.30568 -33.66570 -31.23540 -29.42705 -28.22007 -27.02821 -26.71947 -25.42490 -22.52948 -22.02025 -21.23272 -18.92505 -17.79854 -16.84409 -16.39961 -16.27234 -15.51137 -15.08434 -14.72524 -14.63285 -14.39885 -13.82289 -13.56311 -13.18850 -12.56132 -12.39030 -12.32724 -12.10459 -11.61569 -11.45569 -11.17384 -11.04124 -10.97692 -10.74907 -10.66973 -10.49828 -10.25591 -9.83392 -9.21005 -9.05709 -8.64596 -8.40826 -7.63830 -6.31865 -6.05688 -4.10951 2.12055 2.37198 3.24850 3.34179 3.38471 3.73276 3.95643 4.16295 4.36852 4.59115 5.21245 5.28487 5.36855 5.46495 5.60257 5.67281 5.73735 5.74254 5.93871 5.99270 6.06665 6.08060 6.13068 6.25910 6.35491 6.48933 6.82379 6.99420 7.11461 7.22609 7.35717 7.60496 7.65952 7.80879 7.86651 7.96231 8.23800 8.38420 8.45905 8.98101 9.52591 11.00358 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.007756 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.872477 B = 3609.276140 C = 4907.337952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.312 6.312 3 C 0.111 3.889 4 C -0.252 4.252 5 C 0.203 3.797 6 C -0.100 4.100 7 C -0.110 4.110 8 C 0.035 3.965 9 O -0.319 6.319 10 C 0.030 3.970 11 C 0.076 3.924 12 H 0.066 0.934 13 C -0.504 4.504 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.891 5.891 17 Si 0.886 3.114 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.118 4.118 22 C 0.121 3.879 23 N -0.755 5.755 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.121 0.879 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.261 0.739 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -6.623 -0.087 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.226 6.226 3 C 0.066 3.934 4 C -0.276 4.276 5 C 0.101 3.899 6 C -0.104 4.104 7 C -0.129 4.129 8 C -0.011 4.011 9 O -0.234 6.234 10 C -0.066 4.066 11 C 0.058 3.942 12 H 0.084 0.916 13 C -0.542 4.542 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.714 3.286 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.157 4.157 22 C -0.003 4.003 23 N -0.387 5.387 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.138 0.862 28 H 0.160 0.840 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.666 -6.718 -0.231 10.967 hybrid contribution 0.443 0.337 0.640 0.848 sum -8.222 -6.381 0.409 10.416 Atomic orbital electron populations 1.22893 0.79921 1.02792 1.00784 1.86116 1.19949 1.26813 1.89761 1.17733 0.88782 0.83947 1.02931 1.20287 0.98568 0.90602 1.18112 1.17387 0.90614 0.85474 0.96404 1.20021 0.90131 0.97882 1.02371 1.21055 1.01014 0.89347 1.01527 1.18049 0.87717 0.86096 1.09195 1.86043 1.17932 1.28834 1.90575 1.22921 0.79584 1.02480 1.01604 1.17726 0.91868 0.85546 0.99081 0.91639 1.21078 0.96009 1.29226 1.07899 0.92508 1.24983 0.98752 0.94922 0.95122 1.69934 1.28255 1.27917 1.26812 0.86616 0.83372 0.78120 0.80478 1.19621 1.20885 1.21018 1.21970 0.93535 1.01715 0.98443 1.21665 0.95743 0.83812 0.99115 1.44574 1.09200 1.04579 1.80346 0.89133 0.93319 0.93288 0.86157 0.83981 0.89363 0.92962 0.92833 0.92902 0.93240 0.91300 0.93266 0.92138 0.77786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.82 101.05 0.99 1.38 16 2 O -0.31 -5.52 10.28 -34.23 -0.35 -5.87 16 3 C 0.11 2.16 6.70 -39.17 -0.26 1.89 16 4 C -0.25 -4.54 8.87 -39.23 -0.35 -4.88 16 5 C 0.20 4.00 6.48 -83.61 -0.54 3.46 16 6 C -0.10 -2.23 5.47 -104.39 -0.57 -2.81 16 7 C -0.11 -2.41 8.08 -39.40 -0.32 -2.72 16 8 C 0.03 0.72 6.69 -39.19 -0.26 0.46 16 9 O -0.32 -6.24 10.28 -34.55 -0.36 -6.59 16 10 C 0.03 0.47 9.81 101.05 0.99 1.46 16 11 C 0.08 1.85 2.32 -93.04 -0.22 1.63 16 12 H 0.07 1.78 7.38 -51.93 -0.38 1.39 16 13 C -0.50 -13.26 6.87 -34.44 -0.24 -13.50 16 14 H 0.06 1.53 7.80 -52.49 -0.41 1.12 16 15 C 0.06 1.71 5.45 -17.82 -0.10 1.61 16 16 N -0.89 -24.71 12.84 55.43 0.71 -24.00 16 17 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.12 -2.54 5.37 -26.59 -0.14 -2.68 16 22 C 0.12 2.12 7.11 -3.59 -0.03 2.09 16 23 N -0.75 -12.85 5.81 -58.04 -0.34 -13.19 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 26 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 27 H 0.12 1.78 6.30 -52.49 -0.33 1.45 16 28 H 0.14 3.16 5.45 -52.48 -0.29 2.87 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 31 H 0.05 0.85 7.66 -51.93 -0.40 0.46 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.39 5.39 8.86 -40.82 -0.36 5.03 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -29.99 302.68 -6.86 -36.85 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.03 Total: 5.27 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.04 Total: -12.60 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.37 Total: -37.19 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.71 Total: -12.46 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.99 -6.86 -36.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.858 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds