Wall clock time and date at job start Mon Mar 30 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35990 * 116.99865 * 2 1 4 4 C 1.38443 * 120.12450 * 0.02562 * 3 2 1 5 5 C 1.38988 * 120.07030 * 179.97438 * 4 3 2 6 6 C 1.38610 * 120.14507 * 0.13422 * 5 4 3 7 7 C 1.38594 * 119.68510 * 359.79079 * 6 5 4 8 8 C 1.38383 * 120.34164 * 0.13777 * 7 6 5 9 9 O 1.36092 * 120.00134 * 179.97438 * 8 7 6 10 10 C 1.42903 * 117.00036 * 0.02562 * 9 8 7 11 11 C 1.50626 * 121.47526 * 179.57056 * 6 5 4 12 12 H 1.09004 * 109.26630 * 260.49114 * 11 6 5 13 13 C 1.50698 * 109.27158 * 140.98604 * 11 6 5 14 14 H 1.08001 * 119.99313 * 324.87516 * 13 11 6 15 15 C 1.37874 * 120.00143 * 144.87399 * 13 11 6 16 16 N 1.31516 * 120.00032 * 5.08642 * 15 13 11 17 17 Si 1.86797 * 120.00006 * 185.09072 * 15 13 11 18 18 H 1.48501 * 109.47180 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47252 * 119.99588 * 17 15 13 20 20 H 1.48498 * 109.47061 * 239.99792 * 17 15 13 21 21 C 1.52840 * 110.50592 * 20.75094 * 11 6 5 22 22 C 1.53435 * 108.84851 * 308.52962 * 21 11 6 23 23 N 1.40198 * 119.04895 * 180.18744 * 5 4 3 24 24 H 1.09003 * 109.47476 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46817 * 300.00151 * 1 2 3 26 26 H 1.08999 * 109.47264 * 59.99610 * 1 2 3 27 27 H 1.07996 * 119.96586 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.83293 * 180.16664 * 7 6 5 29 29 H 1.09000 * 109.47272 * 179.97438 * 10 9 8 30 30 H 1.09005 * 109.47062 * 300.00063 * 10 9 8 31 31 H 1.09003 * 109.47058 * 59.99592 * 10 9 8 32 32 H 0.96994 * 119.99941 * 180.02562 * 16 15 13 33 33 H 1.09000 * 109.57235 * 68.34131 * 21 11 6 34 34 H 1.09005 * 109.57783 * 188.59286 * 21 11 6 35 35 H 1.08999 * 109.79494 * 303.67479 * 22 21 11 36 36 H 1.08994 * 109.79686 * 182.81929 * 22 21 11 37 37 H 0.96997 * 120.53941 * 13.10736 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2949 2.3744 0.0005 5 6 1.9270 3.6122 0.0011 6 6 3.3111 3.6870 -0.0017 7 6 4.0614 2.5217 -0.0007 8 6 3.4357 1.2874 0.0003 9 8 4.1793 0.1476 0.0008 10 6 5.6002 0.2999 0.0008 11 6 4.0271 5.0121 -0.0109 12 1 4.3459 5.2417 -1.0277 13 6 5.2375 4.9297 0.8831 14 1 5.2033 4.3360 1.7846 15 6 6.3883 5.6120 0.5500 16 7 6.3991 6.4137 -0.4925 17 14 7.9322 5.3977 1.5794 18 1 7.6599 4.4486 2.6886 19 1 9.0250 4.8637 0.7275 20 1 8.3390 6.7109 2.1409 21 6 3.1047 6.1226 0.4913 22 6 1.7864 6.0638 -0.2916 23 7 1.1451 4.7759 0.0056 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2163 2.3195 0.0014 28 1 5.1400 2.5772 -0.0001 29 1 6.0710 -0.6832 0.0017 30 1 5.9067 0.8492 -0.8894 31 1 5.9066 0.8499 0.8906 32 1 7.2088 6.8934 -0.7270 33 1 2.9054 5.9794 1.5533 34 1 3.5808 7.0908 0.3364 35 1 1.9881 6.1380 -1.3602 36 1 1.1356 6.8809 0.0195 37 1 0.1954 4.7308 0.1978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084035600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:12 Heat of formation + Delta-G solvation = -69.014332 kcal Electronic energy + Delta-G solvation = -20325.356321 eV Core-core repulsion = 17260.282912 eV Total energy + Delta-G solvation = -3065.073409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49069 -39.44888 -39.18292 -35.86172 -35.44389 -33.08703 -30.85495 -29.79042 -28.37074 -27.94839 -27.24071 -24.16760 -23.61072 -22.76781 -20.53476 -19.22131 -18.52939 -18.12638 -17.82558 -16.83540 -16.65990 -16.36487 -16.00442 -15.84067 -15.16026 -15.09266 -14.81820 -14.24154 -14.12941 -13.77155 -13.49427 -13.11343 -12.97092 -12.90345 -12.64528 -12.43991 -12.22860 -12.17885 -12.09645 -11.94343 -11.48322 -11.04157 -10.95247 -10.51944 -10.06369 -9.15155 -8.15578 -7.77886 -6.20898 0.56896 0.80788 1.37703 1.41080 1.51819 2.41879 2.47050 2.57688 2.78977 2.99853 3.16671 4.04569 4.24451 4.34406 4.40193 4.43969 4.47756 4.49606 4.50570 4.57972 4.63501 4.73044 4.75862 4.79701 4.84370 4.93305 5.15890 5.28256 5.40253 5.55390 5.63928 5.76817 5.83449 6.07961 6.28004 6.39235 6.44064 6.81452 6.91772 7.17645 7.44594 8.95469 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.007756 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.872477 B = 3609.276140 C = 4907.337952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.116 3.884 4 C -0.240 4.240 5 C 0.201 3.799 6 C -0.137 4.137 7 C -0.121 4.121 8 C 0.017 3.983 9 O -0.330 6.330 10 C 0.026 3.974 11 C 0.078 3.922 12 H 0.025 0.975 13 C -0.510 4.510 14 H 0.044 0.956 15 C 0.018 3.982 16 N -0.922 5.922 17 Si 0.945 3.055 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.280 1.280 21 C -0.112 4.112 22 C 0.130 3.870 23 N -0.741 5.741 24 H 0.118 0.882 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.160 0.840 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.262 0.738 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.114 -7.640 0.419 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.070 3.930 4 C -0.263 4.263 5 C 0.099 3.901 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.029 4.029 9 O -0.245 6.245 10 C -0.069 4.069 11 C 0.059 3.941 12 H 0.043 0.957 13 C -0.548 4.548 14 H 0.062 0.938 15 C -0.181 4.181 16 N -0.562 5.562 17 Si 0.771 3.229 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.206 1.206 21 C -0.151 4.151 22 C 0.006 3.994 23 N -0.376 5.376 24 H 0.137 0.863 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.177 0.823 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.877 -7.743 0.284 13.355 hybrid contribution 1.037 0.534 0.474 1.260 sum -9.840 -7.208 0.758 12.221 Atomic orbital electron populations 1.23306 0.76860 1.05255 1.02067 1.86104 1.23086 1.25854 1.89317 1.17913 0.88558 0.85194 1.01327 1.20566 1.00325 0.89140 1.16311 1.17455 0.89804 0.87153 0.95724 1.19906 0.91774 0.96784 1.05687 1.20916 1.00285 0.90236 1.02635 1.18213 0.88905 0.85835 1.09913 1.86016 1.19412 1.28526 1.90564 1.23128 0.78195 1.04538 1.01034 1.17562 0.92251 0.87880 0.96406 0.95658 1.21261 0.97417 1.28471 1.07651 0.93797 1.25648 1.01410 0.94790 0.96239 1.70044 1.28923 1.28926 1.28281 0.85698 0.80072 0.78059 0.79086 1.19379 1.20346 1.20592 1.21780 0.95359 0.99511 0.98455 1.21558 0.94373 0.85385 0.98120 1.44468 1.09998 1.03449 1.79644 0.86347 0.91928 0.91902 0.82276 0.85806 0.85723 0.93412 0.93590 0.92892 0.93974 0.93279 0.93813 0.87979 0.75313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.82 113.37 1.11 1.51 16 2 O -0.33 -10.77 10.28 -79.55 -0.82 -11.59 16 3 C 0.12 4.30 6.70 22.54 0.15 4.45 16 4 C -0.24 -7.97 8.87 22.50 0.20 -7.78 16 5 C 0.20 7.67 6.48 38.07 0.25 7.92 16 6 C -0.14 -6.28 5.47 -19.71 -0.11 -6.38 16 7 C -0.12 -5.49 8.08 22.39 0.18 -5.31 16 8 C 0.02 0.71 6.69 22.52 0.15 0.86 16 9 O -0.33 -12.88 10.28 -80.71 -0.83 -13.71 16 10 C 0.03 0.83 9.81 113.37 1.11 1.94 16 11 C 0.08 3.93 2.32 -12.36 -0.03 3.90 16 12 H 0.03 1.46 7.38 -2.38 -0.02 1.45 16 13 C -0.51 -27.99 6.87 25.60 0.18 -27.82 16 14 H 0.04 2.46 7.80 -2.91 -0.02 2.44 16 15 C 0.02 0.97 5.45 84.65 0.46 1.44 16 16 N -0.92 -53.12 12.84 21.45 0.28 -52.85 16 17 Si 0.94 43.40 29.54 68.60 2.03 45.43 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 C -0.11 -4.92 5.37 30.69 0.16 -4.75 16 22 C 0.13 4.35 7.11 86.45 0.62 4.96 16 23 N -0.74 -23.30 5.81 -337.53 -1.96 -25.26 16 24 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.12 7.66 -2.38 -0.02 1.10 16 26 H 0.06 1.13 7.67 -2.39 -0.02 1.11 16 27 H 0.16 3.94 6.30 -2.91 -0.02 3.92 16 28 H 0.12 5.88 5.45 -2.91 -0.02 5.86 16 29 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.05 1.54 7.66 -2.38 -0.02 1.52 16 31 H 0.05 1.51 7.66 -2.39 -0.02 1.49 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.41 9.63 8.86 -92.71 -0.82 8.81 16 Total: -1.00 -67.37 302.68 3.39 -63.98 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.26 Total: 19.08 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.43 Total: -25.07 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.69 Total: -78.11 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -1.65 Total: -25.30 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.37 3.39 -63.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.039 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds