Wall clock time and date at job start Mon Mar 30 2020 07:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36094 * 117.00083 * 2 1 4 4 C 1.38200 * 119.77426 * 359.97438 * 3 2 1 5 5 C 1.38271 * 119.94787 * 180.02562 * 4 3 2 6 6 C 1.38491 * 119.86085 * 359.67304 * 5 4 3 7 7 O 1.35974 * 119.76738 * 180.24472 * 6 5 4 8 8 C 1.42904 * 116.99673 * 0.23220 * 7 6 5 9 9 C 1.39135 * 120.46502 * 0.48040 * 6 5 4 10 10 C 1.38194 * 119.86416 * 359.71214 * 9 6 5 11 11 N 1.39696 * 122.94689 * 179.75167 * 10 9 6 12 12 C 1.46431 * 113.11112 * 19.98331 * 11 10 9 13 13 C 1.53382 * 108.63944 * 306.71671 * 12 11 10 14 14 C 1.50806 * 118.10214 * 179.97438 * 9 6 5 15 15 H 1.08997 * 109.43572 * 75.26278 * 14 9 6 16 16 C 1.50702 * 109.43126 * 315.35439 * 14 9 6 17 17 H 1.07991 * 120.00468 * 359.97438 * 16 14 9 18 18 C 1.37880 * 119.99620 * 179.97438 * 16 14 9 19 19 N 1.31522 * 119.99955 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00044 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46838 * 60.00589 * 20 18 16 22 22 H 1.48505 * 109.46989 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47507 * 300.00290 * 20 18 16 24 24 H 1.09004 * 109.47184 * 60.00103 * 1 2 3 25 25 H 1.08995 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47348 * 300.00236 * 1 2 3 27 27 H 1.08006 * 120.02388 * 359.97438 * 4 3 2 28 28 H 1.08006 * 120.06728 * 179.89579 * 5 4 3 29 29 H 1.08998 * 109.47361 * 299.99811 * 8 7 6 30 30 H 1.08995 * 109.46975 * 60.00264 * 8 7 6 31 31 H 1.09007 * 109.46613 * 179.97438 * 8 7 6 32 32 H 1.00896 * 110.99201 * 145.51137 * 11 10 9 33 33 H 1.09003 * 109.61119 * 186.96721 * 12 11 10 34 34 H 1.09004 * 109.74915 * 66.54675 * 12 11 10 35 35 H 1.09002 * 109.77009 * 308.67015 * 13 12 11 36 36 H 1.08991 * 109.77391 * 187.88002 * 13 12 11 37 37 H 0.96995 * 119.99830 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2896 2.3687 -0.0005 5 6 1.9137 3.6026 -0.0011 6 6 3.2966 3.6759 0.0058 7 8 3.9083 4.8903 0.0103 8 6 3.0628 6.0424 0.0127 9 6 4.0645 2.5156 0.0032 10 6 3.4450 1.2804 -0.0003 11 7 4.1523 0.0757 -0.0082 12 6 5.5363 0.2188 0.4481 13 6 6.2115 1.3242 -0.3735 14 6 5.5659 2.6575 0.0103 15 1 5.8981 2.9468 1.0073 16 6 5.9742 3.7164 -0.9812 17 1 5.2227 4.2341 -1.5586 18 6 7.3074 4.0242 -1.1512 19 7 8.2228 3.3934 -0.4483 20 14 7.8137 5.3362 -2.3807 21 1 7.1913 6.6316 -2.0067 22 1 9.2920 5.4775 -2.3733 23 1 7.3603 4.9431 -3.7390 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2113 2.3084 -0.0014 28 1 1.3238 4.5073 -0.0032 29 1 2.4348 6.0341 -0.8781 30 1 2.4326 6.0286 0.9019 31 1 3.6765 6.9433 0.0167 32 1 3.6675 -0.6315 0.5237 33 1 6.0683 -0.7215 0.3032 34 1 5.5500 0.4878 1.5043 35 1 6.0636 1.1358 -1.4369 36 1 7.2775 1.3523 -0.1481 37 1 9.1606 3.6102 -0.5677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084035605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:39 Heat of formation + Delta-G solvation = -41.590264 kcal Electronic energy + Delta-G solvation = -20668.116620 eV Core-core repulsion = 17604.232408 eV Total energy + Delta-G solvation = -3063.884212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21127 -38.37484 -37.34479 -34.69992 -33.44984 -30.88681 -29.85699 -28.10021 -26.92264 -26.30827 -25.55885 -22.50947 -22.19770 -20.95770 -18.59680 -17.61393 -16.84992 -16.61987 -16.22368 -15.36005 -14.85369 -14.70234 -14.60784 -14.42184 -14.10870 -13.40387 -12.91992 -12.45872 -12.28289 -12.24364 -12.11206 -12.04544 -11.26067 -11.08152 -10.96238 -10.83771 -10.69847 -10.48346 -10.42941 -9.95095 -9.71172 -9.34184 -9.15116 -8.76882 -8.27753 -7.16538 -6.76335 -5.88719 -3.87844 1.99644 2.16250 3.39799 3.43457 3.47041 3.65841 4.07833 4.35398 4.55312 4.73113 5.16760 5.30195 5.33160 5.43168 5.52770 5.57502 5.63349 5.66776 5.82435 5.96924 5.98626 6.06448 6.15491 6.32781 6.38274 6.54605 6.76429 6.93555 7.05364 7.19443 7.40707 7.52810 7.71286 7.87580 7.99402 8.06964 8.15368 8.31619 8.53080 9.11851 9.72235 11.19178 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.007846 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.166252 B = 3567.638476 C = 4557.841724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.321 6.321 3 C 0.032 3.968 4 C -0.162 4.162 5 C -0.223 4.223 6 C 0.136 3.864 7 O -0.269 6.269 8 C 0.021 3.979 9 C -0.090 4.090 10 C 0.136 3.864 11 N -0.623 5.623 12 C 0.051 3.949 13 C -0.106 4.106 14 C 0.091 3.909 15 H 0.039 0.961 16 C -0.478 4.478 17 H 0.064 0.936 18 C 0.058 3.942 19 N -0.899 5.899 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.279 1.279 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.352 0.648 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 -2.634 2.845 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.235 6.235 3 C -0.014 4.014 4 C -0.181 4.181 5 C -0.243 4.243 6 C 0.089 3.911 7 O -0.180 6.180 8 C -0.075 4.075 9 C -0.094 4.094 10 C 0.035 3.965 11 N -0.247 5.247 12 C -0.076 4.076 13 C -0.144 4.144 14 C 0.073 3.927 15 H 0.057 0.943 16 C -0.516 4.516 17 H 0.082 0.918 18 C -0.142 4.142 19 N -0.539 5.539 20 Si 0.721 3.279 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.205 1.205 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.176 0.824 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.844 -2.815 2.243 12.379 hybrid contribution -0.543 1.086 0.060 1.216 sum -12.387 -1.729 2.303 12.717 Atomic orbital electron populations 1.22858 0.79747 1.02813 1.00664 1.85974 1.20081 1.27110 1.90381 1.18617 0.90735 0.84173 1.07875 1.20480 0.98614 0.91652 1.07386 1.20737 0.93413 0.97610 1.12590 1.18711 0.89661 0.86035 0.96676 1.86704 1.32531 1.11006 1.87808 1.22962 0.95797 0.88815 0.99886 1.19526 0.98899 0.87572 1.03429 1.17666 0.87705 0.90026 1.01091 1.56568 1.04221 1.06933 1.56950 1.22283 0.86607 1.00983 0.97715 1.21803 1.01697 0.92698 0.98225 1.17663 0.83058 0.94060 0.97909 0.94337 1.21034 0.91702 1.17991 1.20895 0.91760 1.24902 0.96638 0.96430 0.96196 1.69881 1.00639 1.42117 1.41240 0.86653 0.76990 0.82437 0.81844 1.20421 1.21570 1.20521 0.93325 0.89090 0.93492 0.86355 0.86320 0.93728 0.93928 0.89092 0.82387 0.91290 0.94874 0.92758 0.88603 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.32 -5.18 9.54 -20.04 -0.19 -5.37 16 3 C 0.03 0.60 6.67 -38.94 -0.26 0.34 16 4 C -0.16 -2.74 9.01 -39.58 -0.36 -3.10 16 5 C -0.22 -4.02 9.02 -39.48 -0.36 -4.38 16 6 C 0.14 2.92 6.21 -39.16 -0.24 2.68 16 7 O -0.27 -5.84 7.37 -19.66 -0.14 -5.99 16 8 C 0.02 0.34 9.81 101.05 0.99 1.33 16 9 C -0.09 -2.08 5.40 -104.25 -0.56 -2.65 16 10 C 0.14 2.85 6.24 -83.64 -0.52 2.33 16 11 N -0.62 -12.09 6.47 -58.37 -0.38 -12.47 16 12 C 0.05 1.01 6.61 -3.88 -0.03 0.98 16 13 C -0.11 -2.54 5.03 -26.52 -0.13 -2.68 16 14 C 0.09 2.34 2.11 -92.85 -0.20 2.15 16 15 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.48 -13.25 7.00 -34.44 -0.24 -13.49 16 17 H 0.06 1.82 6.21 -52.49 -0.33 1.49 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 19 N -0.90 -25.60 11.49 55.43 0.64 -24.96 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.08 16 27 H 0.12 1.61 6.25 -52.48 -0.33 1.29 16 28 H 0.12 1.80 6.26 -52.48 -0.33 1.47 16 29 H 0.04 0.64 7.64 -51.93 -0.40 0.24 16 30 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.35 5.97 7.95 -39.29 -0.31 5.66 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.05 1.38 8.09 -51.93 -0.42 0.96 16 36 H 0.10 2.46 6.54 -51.93 -0.34 2.12 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -30.70 294.82 -6.55 -37.25 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.89 Total: 3.91 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.01 Total: -13.59 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.26 Total: -37.43 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.34 Total: -11.36 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.70 -6.55 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.338 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds