Wall clock time and date at job start Mon Mar 30 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36094 * 117.00083 * 2 1 4 4 C 1.38200 * 119.77426 * 359.97438 * 3 2 1 5 5 C 1.38271 * 119.94787 * 180.02562 * 4 3 2 6 6 C 1.38491 * 119.86085 * 359.67304 * 5 4 3 7 7 O 1.35974 * 119.76738 * 180.24472 * 6 5 4 8 8 C 1.42904 * 116.99673 * 0.23220 * 7 6 5 9 9 C 1.39135 * 120.46502 * 0.48040 * 6 5 4 10 10 C 1.38194 * 119.86416 * 359.71214 * 9 6 5 11 11 N 1.39696 * 122.94689 * 179.75167 * 10 9 6 12 12 C 1.46431 * 113.11112 * 19.98331 * 11 10 9 13 13 C 1.53382 * 108.63944 * 306.71671 * 12 11 10 14 14 C 1.50806 * 118.10214 * 179.97438 * 9 6 5 15 15 H 1.08997 * 109.43572 * 75.26278 * 14 9 6 16 16 C 1.50702 * 109.43126 * 315.35439 * 14 9 6 17 17 H 1.07991 * 120.00468 * 359.97438 * 16 14 9 18 18 C 1.37880 * 119.99620 * 179.97438 * 16 14 9 19 19 N 1.31522 * 119.99955 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00044 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46838 * 60.00589 * 20 18 16 22 22 H 1.48505 * 109.46989 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47507 * 300.00290 * 20 18 16 24 24 H 1.09004 * 109.47184 * 60.00103 * 1 2 3 25 25 H 1.08995 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47348 * 300.00236 * 1 2 3 27 27 H 1.08006 * 120.02388 * 359.97438 * 4 3 2 28 28 H 1.08006 * 120.06728 * 179.89579 * 5 4 3 29 29 H 1.08998 * 109.47361 * 299.99811 * 8 7 6 30 30 H 1.08995 * 109.46975 * 60.00264 * 8 7 6 31 31 H 1.09007 * 109.46613 * 179.97438 * 8 7 6 32 32 H 1.00896 * 110.99201 * 145.51137 * 11 10 9 33 33 H 1.09003 * 109.61119 * 186.96721 * 12 11 10 34 34 H 1.09004 * 109.74915 * 66.54675 * 12 11 10 35 35 H 1.09002 * 109.77009 * 308.67015 * 13 12 11 36 36 H 1.08991 * 109.77391 * 187.88002 * 13 12 11 37 37 H 0.96995 * 119.99830 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2896 2.3687 -0.0005 5 6 1.9137 3.6026 -0.0011 6 6 3.2966 3.6759 0.0058 7 8 3.9083 4.8903 0.0103 8 6 3.0628 6.0424 0.0127 9 6 4.0645 2.5156 0.0032 10 6 3.4450 1.2804 -0.0003 11 7 4.1523 0.0757 -0.0082 12 6 5.5363 0.2188 0.4481 13 6 6.2115 1.3242 -0.3735 14 6 5.5659 2.6575 0.0103 15 1 5.8981 2.9468 1.0073 16 6 5.9742 3.7164 -0.9812 17 1 5.2227 4.2341 -1.5586 18 6 7.3074 4.0242 -1.1512 19 7 8.2228 3.3934 -0.4483 20 14 7.8137 5.3362 -2.3807 21 1 7.1913 6.6316 -2.0067 22 1 9.2920 5.4775 -2.3733 23 1 7.3603 4.9431 -3.7390 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2113 2.3084 -0.0014 28 1 1.3238 4.5073 -0.0032 29 1 2.4348 6.0341 -0.8781 30 1 2.4326 6.0286 0.9019 31 1 3.6765 6.9433 0.0167 32 1 3.6675 -0.6315 0.5237 33 1 6.0683 -0.7215 0.3032 34 1 5.5500 0.4878 1.5043 35 1 6.0636 1.1358 -1.4369 36 1 7.2775 1.3523 -0.1481 37 1 9.1606 3.6102 -0.5677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084035605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:38 Heat of formation + Delta-G solvation = -62.299173 kcal Electronic energy + Delta-G solvation = -20669.014626 eV Core-core repulsion = 17604.232408 eV Total energy + Delta-G solvation = -3064.782217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67648 -39.72771 -38.86500 -36.18099 -35.33535 -32.76842 -31.38301 -29.50980 -28.06955 -27.61884 -27.43695 -24.28753 -23.81068 -22.43611 -20.24273 -19.10064 -18.46336 -18.17413 -17.85823 -16.57446 -16.50259 -16.26085 -16.15679 -15.95815 -15.41289 -14.96983 -14.64750 -14.26801 -13.74378 -13.61769 -13.47355 -13.45130 -12.87968 -12.76216 -12.59643 -12.33974 -12.25683 -12.20746 -11.94163 -11.88267 -11.25523 -11.03977 -10.82542 -10.64836 -10.38150 -8.79395 -8.18931 -7.99756 -6.05841 0.50520 0.69243 1.42164 1.44153 1.51400 2.45920 2.52710 2.68182 2.88784 3.20872 3.34006 3.94770 4.16821 4.30892 4.35675 4.42466 4.44567 4.50338 4.51608 4.54024 4.63496 4.68605 4.78946 4.82262 4.84086 4.97188 5.17643 5.30025 5.41713 5.45560 5.66326 5.76514 5.89653 6.03957 6.14808 6.42689 6.48386 6.68601 6.90183 6.97432 7.56286 9.06135 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.007846 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.166252 B = 3567.638476 C = 4557.841724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.332 6.332 3 C 0.036 3.964 4 C -0.150 4.150 5 C -0.214 4.214 6 C 0.114 3.886 7 O -0.310 6.310 8 C 0.014 3.986 9 C -0.133 4.133 10 C 0.117 3.883 11 N -0.621 5.621 12 C 0.063 3.937 13 C -0.097 4.097 14 C 0.095 3.905 15 H -0.003 1.003 16 C -0.485 4.485 17 H 0.054 0.946 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.277 1.277 24 H 0.058 0.942 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.161 0.839 28 H 0.151 0.849 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.367 0.633 33 H 0.097 0.903 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 -2.786 2.587 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C -0.011 4.011 4 C -0.169 4.169 5 C -0.234 4.234 6 C 0.068 3.932 7 O -0.223 6.223 8 C -0.081 4.081 9 C -0.137 4.137 10 C 0.016 3.984 11 N -0.247 5.247 12 C -0.064 4.064 13 C -0.135 4.135 14 C 0.076 3.924 15 H 0.015 0.985 16 C -0.524 4.524 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.566 5.566 20 Si 0.776 3.224 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.203 1.203 24 H 0.077 0.923 25 H 0.136 0.864 26 H 0.081 0.919 27 H 0.178 0.822 28 H 0.169 0.831 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.193 0.807 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.887 -2.974 1.991 15.311 hybrid contribution 0.223 1.116 0.167 1.150 sum -14.664 -1.858 2.158 14.938 Atomic orbital electron populations 1.23254 0.76891 1.05181 1.01835 1.85966 1.22917 1.25825 1.90021 1.18624 0.89956 0.85737 1.06810 1.20953 1.00607 0.90498 1.04858 1.21071 0.92017 0.99517 1.10791 1.18913 0.91090 0.85524 0.97721 1.86588 1.35233 1.12367 1.88153 1.23240 0.96048 0.87125 1.01713 1.19417 0.97467 0.89680 1.07136 1.17824 0.89352 0.89555 1.01625 1.56527 1.03858 1.07077 1.57266 1.22108 0.87128 1.00493 0.96719 1.21532 1.00602 0.94033 0.97349 1.17419 0.85800 0.94098 0.95052 0.98542 1.21245 0.91671 1.18485 1.20972 0.92770 1.25632 0.96734 0.98485 0.97976 1.70014 1.00663 1.43343 1.42545 0.85739 0.76752 0.80230 0.79660 1.19701 1.21036 1.20286 0.92345 0.86403 0.91900 0.82185 0.83098 0.92129 0.91604 0.88249 0.80678 0.88521 0.94826 0.95061 0.91045 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.33 -9.64 9.54 -94.62 -0.90 -10.55 16 3 C 0.04 1.23 6.67 22.68 0.15 1.38 16 4 C -0.15 -4.53 9.01 22.27 0.20 -4.33 16 5 C -0.21 -7.14 9.02 22.34 0.20 -6.94 16 6 C 0.11 4.89 6.21 22.55 0.14 5.03 16 7 O -0.31 -13.68 7.37 -93.25 -0.69 -14.37 16 8 C 0.01 0.41 9.81 113.37 1.11 1.52 16 9 C -0.13 -6.31 5.40 -19.63 -0.11 -6.41 16 10 C 0.12 4.89 6.24 38.30 0.24 5.13 16 11 N -0.62 -23.88 6.47 -338.59 -2.19 -26.07 16 12 C 0.06 2.51 6.61 86.52 0.57 3.08 16 13 C -0.10 -4.89 5.03 30.73 0.15 -4.73 16 14 C 0.09 5.13 2.11 -12.24 -0.03 5.11 16 15 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 16 C -0.49 -28.15 7.00 25.60 0.18 -27.97 16 17 H 0.05 3.18 6.21 -2.92 -0.02 3.16 16 18 C 0.01 0.49 5.30 84.65 0.45 0.94 16 19 N -0.92 -55.00 11.49 21.45 0.25 -54.75 16 20 Si 0.95 45.79 29.54 68.60 2.03 47.82 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H 0.06 0.96 7.65 -2.38 -0.02 0.94 16 25 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 0.95 7.65 -2.39 -0.02 0.93 16 27 H 0.16 3.44 6.25 -2.91 -0.02 3.42 16 28 H 0.15 3.95 6.26 -2.91 -0.02 3.93 16 29 H 0.06 1.60 7.64 -2.39 -0.02 1.58 16 30 H 0.07 1.64 7.66 -2.39 -0.02 1.62 16 31 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.37 11.94 7.95 -89.70 -0.71 11.23 16 33 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.03 1.33 8.11 -2.39 -0.02 1.31 16 35 H 0.03 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.07 3.90 6.54 -2.39 -0.02 3.88 16 37 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -70.14 294.82 3.25 -66.89 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.38 Total: 17.70 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 4.38 Total: -26.67 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.94 Total: -80.82 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.59 Total: -24.92 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -70.14 3.25 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.590 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds