Wall clock time and date at job start Mon Mar 30 2020 07:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 116.99844 * 2 1 4 4 C 1.38732 * 120.09552 * 359.97438 * 3 2 1 5 5 C 1.38184 * 119.83149 * 179.86039 * 4 3 2 6 6 O 1.36000 * 119.79021 * 180.09019 * 5 4 3 7 7 C 1.42899 * 117.00727 * 359.97438 * 6 5 4 8 8 C 1.40012 * 120.41166 * 0.10767 * 5 4 3 9 9 C 1.38132 * 119.46736 * 359.87465 * 8 5 4 10 10 C 1.38425 * 120.09789 * 180.02562 * 3 2 1 11 11 C 1.50819 * 122.01342 * 178.92956 * 9 8 5 12 12 H 1.09001 * 109.62379 * 256.34370 * 11 9 8 13 13 C 1.50703 * 109.26877 * 136.42018 * 11 9 8 14 14 H 1.07996 * 119.99989 * 359.94297 * 13 11 9 15 15 C 1.37878 * 119.99921 * 179.97438 * 13 11 9 16 16 N 1.31518 * 119.99652 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 120.00078 * 359.97438 * 15 13 11 18 18 H 1.48494 * 109.47028 * 90.00335 * 17 15 13 19 19 H 1.48504 * 109.46969 * 210.00486 * 17 15 13 20 20 H 1.48501 * 109.47232 * 329.99901 * 17 15 13 21 21 C 1.53023 * 109.63669 * 16.49268 * 11 9 8 22 22 C 1.53372 * 107.95238 * 312.26232 * 21 11 9 23 23 N 1.39984 * 117.61058 * 180.41024 * 8 5 4 24 24 H 1.08998 * 109.47157 * 60.00279 * 1 2 3 25 25 H 1.09005 * 109.47266 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47661 * 299.99779 * 1 2 3 27 27 H 1.08001 * 120.08757 * 359.88387 * 4 3 2 28 28 H 1.08998 * 109.46904 * 300.00472 * 7 6 5 29 29 H 1.09005 * 109.46914 * 59.99872 * 7 6 5 30 30 H 1.08993 * 109.47259 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.72437 * 359.93389 * 10 3 2 32 32 H 0.97003 * 119.99823 * 179.97438 * 16 15 13 33 33 H 1.09006 * 109.76406 * 192.65060 * 21 11 9 34 34 H 1.08995 * 109.76685 * 71.87961 * 21 11 9 35 35 H 1.08997 * 109.61299 * 308.47921 * 22 21 11 36 36 H 1.09005 * 109.60870 * 187.97364 * 22 21 11 37 37 H 1.00900 * 110.99904 * 325.52072 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2927 2.3765 -0.0005 5 6 1.9256 3.6048 0.0024 6 8 1.1860 4.7461 0.0037 7 6 -0.2354 4.5982 0.0014 8 6 3.3236 3.6818 0.0036 9 6 4.0682 2.5183 0.0045 10 6 3.4286 1.2866 -0.0005 11 6 5.5761 2.5340 -0.0180 12 1 5.9299 2.2852 -1.0186 13 6 6.0988 1.5188 0.9655 14 1 5.4089 0.9252 1.5468 15 6 7.4579 1.3485 1.1237 16 7 7.9140 0.4622 1.9817 17 14 8.6512 2.3755 0.1184 18 1 8.9730 3.6236 0.8558 19 1 9.8975 1.6016 -0.1125 20 1 8.0319 2.7175 -1.1872 21 6 6.0817 3.9254 0.3694 22 6 5.2933 4.9586 -0.4450 23 7 3.9033 4.9559 0.0155 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 0.2140 2.3234 -0.0028 28 1 -0.5422 4.0513 -0.8901 29 1 -0.5448 4.0476 0.8898 30 1 -0.7031 5.5827 0.0032 31 1 4.0140 0.3790 0.0001 32 1 8.8701 0.3421 2.0927 33 1 7.1442 4.0085 0.1404 34 1 5.9193 4.0934 1.4340 35 1 5.3290 4.6956 -1.5022 36 1 5.7256 5.9482 -0.2970 37 1 3.3464 5.6114 -0.5120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084035616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:18 Heat of formation + Delta-G solvation = -40.260374 kcal Electronic energy + Delta-G solvation = -20376.263208 eV Core-core repulsion = 17312.436665 eV Total energy + Delta-G solvation = -3063.826543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40535 -38.51626 -38.01147 -34.73247 -33.71033 -31.44727 -29.50623 -29.00590 -27.65064 -26.29557 -25.65230 -22.59203 -22.33969 -21.18258 -19.12833 -17.84669 -16.89554 -16.82963 -16.16336 -15.75809 -15.65061 -15.23827 -14.61862 -14.44306 -14.38707 -13.59145 -13.23071 -12.95367 -12.58759 -12.55862 -12.34131 -12.03087 -11.73693 -11.40242 -11.36433 -11.00924 -10.91311 -10.72657 -10.38052 -10.15096 -9.82170 -9.42708 -9.12691 -9.07073 -8.55790 -7.80595 -6.70247 -6.06985 -4.06631 1.89907 2.02776 3.26947 3.35164 3.38199 3.45736 3.64714 4.24207 4.39545 4.54361 5.04263 5.15748 5.16606 5.19629 5.23021 5.25402 5.44680 5.51898 5.58929 5.60532 5.70422 5.83014 5.86512 5.95843 6.16643 6.38088 6.49229 6.68129 6.81158 6.84664 6.98020 7.26473 7.35516 7.41362 7.64009 7.70893 7.85754 8.03474 8.51439 8.98377 9.53006 11.05687 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.007339 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.751787 B = 3814.080986 C = 4925.979492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.316 6.316 3 C 0.119 3.881 4 C -0.281 4.281 5 C 0.106 3.894 6 O -0.316 6.316 7 C 0.033 3.967 8 C 0.064 3.936 9 C -0.008 4.008 10 C -0.136 4.136 11 C 0.049 3.951 12 H 0.045 0.955 13 C -0.508 4.508 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.296 1.296 20 H -0.266 1.266 21 C -0.125 4.125 22 C 0.056 3.944 23 N -0.622 5.622 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.126 0.874 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.264 0.736 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 6.471 -6.391 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.229 6.229 3 C 0.073 3.927 4 C -0.301 4.301 5 C 0.059 3.941 6 O -0.230 6.230 7 C -0.062 4.062 8 C -0.036 4.036 9 C -0.011 4.011 10 C -0.155 4.155 11 C 0.030 3.970 12 H 0.063 0.937 13 C -0.545 4.545 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.711 3.289 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.191 1.191 21 C -0.163 4.163 22 C -0.072 4.072 23 N -0.248 5.248 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.143 0.857 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.160 0.840 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.918 6.434 -5.679 16.352 hybrid contribution 0.000 0.432 -1.123 1.204 sum -13.919 6.866 -6.803 16.946 Atomic orbital electron populations 1.22910 0.79738 1.03165 1.00611 1.86108 1.20223 1.27195 1.89418 1.18593 0.92144 0.83074 0.98874 1.20818 0.99414 0.91807 1.18078 1.18415 0.89524 0.84634 1.01499 1.85988 1.18257 1.29248 1.89517 1.22915 0.79436 1.03058 1.00840 1.17874 0.88173 0.90169 1.07345 1.19497 0.96810 0.89314 0.95492 1.20413 0.90155 0.99249 1.05662 1.18290 0.86597 0.93763 0.98324 0.93742 1.21001 0.92527 1.19212 1.21801 0.89983 1.24978 0.98120 0.95005 0.94839 1.69886 1.13963 1.34340 1.35229 0.86941 0.80528 0.79986 0.81398 1.20356 1.22292 1.19103 1.22192 0.97670 0.95428 1.01001 1.22100 0.87512 1.00415 0.97193 1.56732 1.03929 1.06521 1.57573 0.93414 0.88784 0.93265 0.85669 0.93323 0.93107 0.88758 0.83997 0.92571 0.92556 0.90327 0.94734 0.90836 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.82 101.05 0.99 1.35 16 2 O -0.32 -5.41 10.50 -19.73 -0.21 -5.61 16 3 C 0.12 2.23 6.68 -39.33 -0.26 1.97 16 4 C -0.28 -4.68 8.01 -39.42 -0.32 -5.00 16 5 C 0.11 1.88 6.67 -38.94 -0.26 1.63 16 6 O -0.32 -4.80 9.53 -19.74 -0.19 -4.99 16 7 C 0.03 0.34 9.81 101.05 0.99 1.33 16 8 C 0.06 1.26 6.24 -83.51 -0.52 0.74 16 9 C -0.01 -0.17 5.39 -104.40 -0.56 -0.73 16 10 C -0.14 -2.91 8.67 -39.31 -0.34 -3.25 16 11 C 0.05 1.16 1.85 -92.85 -0.17 0.99 16 12 H 0.04 1.07 7.19 -51.93 -0.37 0.70 16 13 C -0.51 -14.10 8.33 -34.44 -0.29 -14.38 16 14 H 0.08 2.49 7.09 -52.49 -0.37 2.12 16 15 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 16 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 17 Si 0.88 21.38 24.27 -169.99 -4.13 17.25 16 18 H -0.28 -6.54 6.99 56.52 0.40 -6.14 16 19 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.27 -6.10 6.49 56.52 0.37 -5.74 16 21 C -0.13 -2.72 4.70 -26.53 -0.12 -2.85 16 22 C 0.06 0.99 6.61 -3.89 -0.03 0.96 16 23 N -0.62 -11.25 6.48 -58.31 -0.38 -11.63 16 24 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.52 7.67 -51.93 -0.40 0.13 16 27 H 0.13 1.67 4.51 -52.49 -0.24 1.43 16 28 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 29 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.14 3.24 7.18 -52.49 -0.38 2.86 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.06 1.23 3.78 -51.93 -0.20 1.03 16 34 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 35 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.35 5.50 7.95 -39.29 -0.31 5.19 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -31.60 290.81 -5.47 -37.07 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.74 Total: 5.20 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.99 Total: -15.28 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.40 Total: -38.02 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.40 Total: -10.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.13 Total: 17.25 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.60 -5.47 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.188 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds