Wall clock time and date at job start Mon Mar 30 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 116.99844 * 2 1 4 4 C 1.38732 * 120.09552 * 359.97438 * 3 2 1 5 5 C 1.38184 * 119.83149 * 179.86039 * 4 3 2 6 6 O 1.36000 * 119.79021 * 180.09019 * 5 4 3 7 7 C 1.42899 * 117.00727 * 359.97438 * 6 5 4 8 8 C 1.40012 * 120.41166 * 0.10767 * 5 4 3 9 9 C 1.38132 * 119.46736 * 359.87465 * 8 5 4 10 10 C 1.38425 * 120.09789 * 180.02562 * 3 2 1 11 11 C 1.50819 * 122.01342 * 178.92956 * 9 8 5 12 12 H 1.09001 * 109.62379 * 256.34370 * 11 9 8 13 13 C 1.50703 * 109.26877 * 136.42018 * 11 9 8 14 14 H 1.07996 * 119.99989 * 359.94297 * 13 11 9 15 15 C 1.37878 * 119.99921 * 179.97438 * 13 11 9 16 16 N 1.31518 * 119.99652 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 120.00078 * 359.97438 * 15 13 11 18 18 H 1.48494 * 109.47028 * 90.00335 * 17 15 13 19 19 H 1.48504 * 109.46969 * 210.00486 * 17 15 13 20 20 H 1.48501 * 109.47232 * 329.99901 * 17 15 13 21 21 C 1.53023 * 109.63669 * 16.49268 * 11 9 8 22 22 C 1.53372 * 107.95238 * 312.26232 * 21 11 9 23 23 N 1.39984 * 117.61058 * 180.41024 * 8 5 4 24 24 H 1.08998 * 109.47157 * 60.00279 * 1 2 3 25 25 H 1.09005 * 109.47266 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47661 * 299.99779 * 1 2 3 27 27 H 1.08001 * 120.08757 * 359.88387 * 4 3 2 28 28 H 1.08998 * 109.46904 * 300.00472 * 7 6 5 29 29 H 1.09005 * 109.46914 * 59.99872 * 7 6 5 30 30 H 1.08993 * 109.47259 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.72437 * 359.93389 * 10 3 2 32 32 H 0.97003 * 119.99823 * 179.97438 * 16 15 13 33 33 H 1.09006 * 109.76406 * 192.65060 * 21 11 9 34 34 H 1.08995 * 109.76685 * 71.87961 * 21 11 9 35 35 H 1.08997 * 109.61299 * 308.47921 * 22 21 11 36 36 H 1.09005 * 109.60870 * 187.97364 * 22 21 11 37 37 H 1.00900 * 110.99904 * 325.52072 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2927 2.3765 -0.0005 5 6 1.9256 3.6048 0.0024 6 8 1.1860 4.7461 0.0037 7 6 -0.2354 4.5982 0.0014 8 6 3.3236 3.6818 0.0036 9 6 4.0682 2.5183 0.0045 10 6 3.4286 1.2866 -0.0005 11 6 5.5761 2.5340 -0.0180 12 1 5.9299 2.2852 -1.0186 13 6 6.0988 1.5188 0.9655 14 1 5.4089 0.9252 1.5468 15 6 7.4579 1.3485 1.1237 16 7 7.9140 0.4622 1.9817 17 14 8.6512 2.3755 0.1184 18 1 8.9730 3.6236 0.8558 19 1 9.8975 1.6016 -0.1125 20 1 8.0319 2.7175 -1.1872 21 6 6.0817 3.9254 0.3694 22 6 5.2933 4.9586 -0.4450 23 7 3.9033 4.9559 0.0155 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 0.2140 2.3234 -0.0028 28 1 -0.5422 4.0513 -0.8901 29 1 -0.5448 4.0476 0.8898 30 1 -0.7031 5.5827 0.0032 31 1 4.0140 0.3790 0.0001 32 1 8.8701 0.3421 2.0927 33 1 7.1442 4.0085 0.1404 34 1 5.9193 4.0934 1.4340 35 1 5.3290 4.6956 -1.5022 36 1 5.7256 5.9482 -0.2970 37 1 3.3464 5.6114 -0.5120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084035616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:17 Heat of formation + Delta-G solvation = -63.914048 kcal Electronic energy + Delta-G solvation = -20377.288909 eV Core-core repulsion = 17312.436665 eV Total energy + Delta-G solvation = -3064.852244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79682 -39.80336 -39.36764 -36.13697 -35.55263 -33.40294 -30.95273 -30.35467 -28.63234 -27.78810 -27.13325 -24.24033 -23.82681 -22.75468 -20.56039 -19.24963 -18.92878 -18.19502 -17.50221 -17.15977 -16.83082 -16.49168 -16.31360 -15.91447 -15.58169 -15.08481 -14.78690 -14.66094 -14.24937 -13.79667 -13.68693 -13.53381 -13.26221 -12.75880 -12.55540 -12.41636 -12.32362 -12.22456 -12.16573 -11.83536 -11.34670 -11.18402 -11.10713 -10.68893 -10.47409 -9.31649 -8.27549 -8.11464 -6.31922 0.41845 0.55950 1.31935 1.37241 1.47315 2.31274 2.33950 2.45720 2.76420 3.07353 3.15081 3.80832 4.09113 4.11451 4.20769 4.26110 4.29149 4.38099 4.40414 4.44072 4.46504 4.53210 4.66929 4.70419 4.76656 4.82324 4.94074 5.05015 5.07867 5.31959 5.39976 5.55481 5.63849 5.78880 6.04805 6.31520 6.37496 6.50159 6.69615 6.73888 7.31127 8.89178 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.007339 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.751787 B = 3814.080986 C = 4925.979492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.121 3.879 4 C -0.269 4.269 5 C 0.118 3.882 6 O -0.321 6.321 7 C 0.019 3.981 8 C 0.050 3.950 9 C -0.036 4.036 10 C -0.170 4.170 11 C 0.050 3.950 12 H 0.039 0.961 13 C -0.510 4.510 14 H 0.034 0.966 15 C 0.012 3.988 16 N -0.949 5.949 17 Si 0.947 3.053 18 H -0.260 1.260 19 H -0.297 1.297 20 H -0.243 1.243 21 C -0.123 4.123 22 C 0.062 3.938 23 N -0.622 5.622 24 H 0.068 0.932 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.165 0.835 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.266 0.734 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.773 9.292 -7.987 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.076 3.924 4 C -0.289 4.289 5 C 0.070 3.930 6 O -0.235 6.235 7 C -0.075 4.075 8 C -0.049 4.049 9 C -0.040 4.040 10 C -0.189 4.189 11 C 0.031 3.969 12 H 0.057 0.943 13 C -0.547 4.547 14 H 0.052 0.948 15 C -0.185 4.185 16 N -0.589 5.589 17 Si 0.773 3.227 18 H -0.186 1.186 19 H -0.225 1.225 20 H -0.166 1.166 21 C -0.161 4.161 22 C -0.065 4.065 23 N -0.249 5.249 24 H 0.087 0.913 25 H 0.136 0.864 26 H 0.080 0.920 27 H 0.183 0.817 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.305 9.280 -7.290 20.128 hybrid contribution 0.449 -0.527 -0.566 0.895 sum -15.856 8.753 -7.856 19.742 Atomic orbital electron populations 1.23336 0.76573 1.05505 1.02171 1.86086 1.23526 1.26663 1.89143 1.18551 0.91320 0.84595 0.97983 1.21117 1.01167 0.90416 1.16156 1.18425 0.89149 0.85831 0.99555 1.85995 1.20750 1.27890 1.88865 1.23350 0.76608 1.05579 1.01988 1.17920 0.89385 0.89996 1.07625 1.19340 0.95934 0.90568 0.98160 1.20231 0.91821 0.98068 1.08822 1.18155 0.88435 0.93839 0.96458 0.94279 1.21203 0.92108 1.19627 1.21804 0.94779 1.25891 1.00144 0.96352 0.96117 1.70053 1.14447 1.36745 1.37675 0.85875 0.77542 0.78541 0.80745 1.18594 1.22456 1.16645 1.22030 0.98392 0.95320 1.00373 1.22085 0.86925 1.00674 0.96859 1.56705 1.04268 1.05948 1.58024 0.91332 0.86360 0.91959 0.81745 0.91653 0.92326 0.85731 0.87604 0.92502 0.92383 0.92595 0.93516 0.87363 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.82 113.37 1.11 1.49 16 2 O -0.34 -11.56 10.50 -93.51 -0.98 -12.54 16 3 C 0.12 4.58 6.68 22.43 0.15 4.73 16 4 C -0.27 -8.31 8.01 22.38 0.18 -8.13 16 5 C 0.12 3.91 6.67 22.69 0.15 4.06 16 6 O -0.32 -8.49 9.53 -93.55 -0.89 -9.39 16 7 C 0.02 0.30 9.81 113.37 1.11 1.41 16 8 C 0.05 1.95 6.24 38.24 0.24 2.18 16 9 C -0.04 -1.65 5.39 -19.72 -0.11 -1.76 16 10 C -0.17 -7.76 8.67 22.45 0.19 -7.57 16 11 C 0.05 2.44 1.85 -12.24 -0.02 2.41 16 12 H 0.04 1.93 7.19 -2.39 -0.02 1.91 16 13 C -0.51 -30.21 8.33 25.60 0.21 -30.00 16 14 H 0.03 2.27 7.09 -2.91 -0.02 2.25 16 15 C 0.01 0.70 5.45 84.65 0.46 1.16 16 16 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 17 Si 0.95 44.80 24.27 68.60 1.66 46.47 16 18 H -0.26 -11.57 6.99 99.48 0.70 -10.88 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.24 -10.48 6.49 99.48 0.65 -9.83 16 21 C -0.12 -5.30 4.70 30.73 0.14 -5.16 16 22 C 0.06 2.05 6.61 86.52 0.57 2.62 16 23 N -0.62 -21.07 6.48 -338.38 -2.19 -23.26 16 24 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 25 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.06 1.12 7.67 -2.39 -0.02 1.10 16 27 H 0.17 3.65 4.51 -2.91 -0.01 3.63 16 28 H 0.06 0.86 7.65 -2.39 -0.02 0.84 16 29 H 0.06 0.88 7.65 -2.38 -0.02 0.86 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 5.42 7.18 -2.91 -0.02 5.39 16 32 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 33 H 0.06 2.43 3.78 -2.38 -0.01 2.42 16 34 H 0.06 2.62 8.09 -2.39 -0.02 2.60 16 35 H 0.05 1.45 8.11 -2.39 -0.02 1.43 16 36 H 0.11 2.85 8.14 -2.38 -0.02 2.84 16 37 H 0.37 10.26 7.95 -89.69 -0.71 9.54 16 Total: -1.00 -74.21 290.81 2.61 -71.60 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.31 Total: 20.08 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 4.40 Total: -32.54 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.89 Total: -83.68 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.87 Total: -21.93 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.66 Total: 46.47 kcal Total: -74.21 2.61 -71.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.685 kcal (2) G-P(sol) polarization free energy of solvation -74.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds