Wall clock time and date at job start Mon Mar 30 2020 07:09:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35996 * 116.99844 * 2 1
4 4 C 1.38732 * 120.09552 * 359.97438 * 3 2 1
5 5 C 1.38184 * 119.83149 * 179.86039 * 4 3 2
6 6 O 1.36000 * 119.79021 * 180.09019 * 5 4 3
7 7 C 1.42899 * 117.00727 * 359.97438 * 6 5 4
8 8 C 1.40012 * 120.41166 * 0.10767 * 5 4 3
9 9 C 1.38132 * 119.46736 * 359.87465 * 8 5 4
10 10 C 1.38425 * 120.09789 * 180.02562 * 3 2 1
11 11 C 1.50819 * 122.01342 * 178.92956 * 9 8 5
12 12 H 1.09001 * 109.62379 * 256.34370 * 11 9 8
13 13 C 1.50703 * 109.26877 * 136.42018 * 11 9 8
14 14 H 1.07996 * 119.99989 * 359.94297 * 13 11 9
15 15 C 1.37878 * 119.99921 * 179.97438 * 13 11 9
16 16 N 1.31518 * 119.99652 * 180.02562 * 15 13 11
17 17 Si 1.86798 * 120.00078 * 359.97438 * 15 13 11
18 18 H 1.48494 * 109.47028 * 90.00335 * 17 15 13
19 19 H 1.48504 * 109.46969 * 210.00486 * 17 15 13
20 20 H 1.48501 * 109.47232 * 329.99901 * 17 15 13
21 21 C 1.53023 * 109.63669 * 16.49268 * 11 9 8
22 22 C 1.53372 * 107.95238 * 312.26232 * 21 11 9
23 23 N 1.39984 * 117.61058 * 180.41024 * 8 5 4
24 24 H 1.08998 * 109.47157 * 60.00279 * 1 2 3
25 25 H 1.09005 * 109.47266 * 179.97438 * 1 2 3
26 26 H 1.08992 * 109.47661 * 299.99779 * 1 2 3
27 27 H 1.08001 * 120.08757 * 359.88387 * 4 3 2
28 28 H 1.08998 * 109.46904 * 300.00472 * 7 6 5
29 29 H 1.09005 * 109.46914 * 59.99872 * 7 6 5
30 30 H 1.08993 * 109.47259 * 179.97438 * 7 6 5
31 31 H 1.08002 * 119.72437 * 359.93389 * 10 3 2
32 32 H 0.97003 * 119.99823 * 179.97438 * 16 15 13
33 33 H 1.09006 * 109.76406 * 192.65060 * 21 11 9
34 34 H 1.08995 * 109.76685 * 71.87961 * 21 11 9
35 35 H 1.08997 * 109.61299 * 308.47921 * 22 21 11
36 36 H 1.09005 * 109.60870 * 187.97364 * 22 21 11
37 37 H 1.00900 * 110.99904 * 325.52072 * 23 8 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2118 0.0000
4 6 1.2927 2.3765 -0.0005
5 6 1.9256 3.6048 0.0024
6 8 1.1860 4.7461 0.0037
7 6 -0.2354 4.5982 0.0014
8 6 3.3236 3.6818 0.0036
9 6 4.0682 2.5183 0.0045
10 6 3.4286 1.2866 -0.0005
11 6 5.5761 2.5340 -0.0180
12 1 5.9299 2.2852 -1.0186
13 6 6.0988 1.5188 0.9655
14 1 5.4089 0.9252 1.5468
15 6 7.4579 1.3485 1.1237
16 7 7.9140 0.4622 1.9817
17 14 8.6512 2.3755 0.1184
18 1 8.9730 3.6236 0.8558
19 1 9.8975 1.6016 -0.1125
20 1 8.0319 2.7175 -1.1872
21 6 6.0817 3.9254 0.3694
22 6 5.2933 4.9586 -0.4450
23 7 3.9033 4.9559 0.0155
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3634 0.5137 0.8899
27 1 0.2140 2.3234 -0.0028
28 1 -0.5422 4.0513 -0.8901
29 1 -0.5448 4.0476 0.8898
30 1 -0.7031 5.5827 0.0032
31 1 4.0140 0.3790 0.0001
32 1 8.8701 0.3421 2.0927
33 1 7.1442 4.0085 0.1404
34 1 5.9193 4.0934 1.4340
35 1 5.3290 4.6956 -1.5022
36 1 5.7256 5.9482 -0.2970
37 1 3.3464 5.6114 -0.5120
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084035616.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:09:17
Heat of formation + Delta-G solvation = -63.914048 kcal
Electronic energy + Delta-G solvation = -20377.288909 eV
Core-core repulsion = 17312.436665 eV
Total energy + Delta-G solvation = -3064.852244 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.79682 -39.80336 -39.36764 -36.13697 -35.55263 -33.40294 -30.95273 -30.35467
-28.63234 -27.78810 -27.13325 -24.24033 -23.82681 -22.75468 -20.56039 -19.24963
-18.92878 -18.19502 -17.50221 -17.15977 -16.83082 -16.49168 -16.31360 -15.91447
-15.58169 -15.08481 -14.78690 -14.66094 -14.24937 -13.79667 -13.68693 -13.53381
-13.26221 -12.75880 -12.55540 -12.41636 -12.32362 -12.22456 -12.16573 -11.83536
-11.34670 -11.18402 -11.10713 -10.68893 -10.47409 -9.31649 -8.27549 -8.11464
-6.31922 0.41845 0.55950 1.31935 1.37241 1.47315 2.31274 2.33950
2.45720 2.76420 3.07353 3.15081 3.80832 4.09113 4.11451 4.20769
4.26110 4.29149 4.38099 4.40414 4.44072 4.46504 4.53210 4.66929
4.70419 4.76656 4.82324 4.94074 5.05015 5.07867 5.31959 5.39976
5.55481 5.63849 5.78880 6.04805 6.31520 6.37496 6.50159 6.69615
6.73888 7.31127 8.89178
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.021373 B = 0.007339 C = 0.005683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1309.751787 B = 3814.080986 C = 4925.979492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.340 6.340
3 C 0.121 3.879
4 C -0.269 4.269
5 C 0.118 3.882
6 O -0.321 6.321
7 C 0.019 3.981
8 C 0.050 3.950
9 C -0.036 4.036
10 C -0.170 4.170
11 C 0.050 3.950
12 H 0.039 0.961
13 C -0.510 4.510
14 H 0.034 0.966
15 C 0.012 3.988
16 N -0.949 5.949
17 Si 0.947 3.053
18 H -0.260 1.260
19 H -0.297 1.297
20 H -0.243 1.243
21 C -0.123 4.123
22 C 0.062 3.938
23 N -0.622 5.622
24 H 0.068 0.932
25 H 0.118 0.882
26 H 0.062 0.938
27 H 0.165 0.835
28 H 0.065 0.935
29 H 0.058 0.942
30 H 0.125 0.875
31 H 0.106 0.894
32 H 0.266 0.734
33 H 0.058 0.942
34 H 0.055 0.945
35 H 0.047 0.953
36 H 0.108 0.892
37 H 0.368 0.632
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.773 9.292 -7.987 20.772
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.254 6.254
3 C 0.076 3.924
4 C -0.289 4.289
5 C 0.070 3.930
6 O -0.235 6.235
7 C -0.075 4.075
8 C -0.049 4.049
9 C -0.040 4.040
10 C -0.189 4.189
11 C 0.031 3.969
12 H 0.057 0.943
13 C -0.547 4.547
14 H 0.052 0.948
15 C -0.185 4.185
16 N -0.589 5.589
17 Si 0.773 3.227
18 H -0.186 1.186
19 H -0.225 1.225
20 H -0.166 1.166
21 C -0.161 4.161
22 C -0.065 4.065
23 N -0.249 5.249
24 H 0.087 0.913
25 H 0.136 0.864
26 H 0.080 0.920
27 H 0.183 0.817
28 H 0.083 0.917
29 H 0.077 0.923
30 H 0.143 0.857
31 H 0.124 0.876
32 H 0.075 0.925
33 H 0.076 0.924
34 H 0.074 0.926
35 H 0.065 0.935
36 H 0.126 0.874
37 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -16.305 9.280 -7.290 20.128
hybrid contribution 0.449 -0.527 -0.566 0.895
sum -15.856 8.753 -7.856 19.742
Atomic orbital electron populations
1.23336 0.76573 1.05505 1.02171 1.86086 1.23526 1.26663 1.89143
1.18551 0.91320 0.84595 0.97983 1.21117 1.01167 0.90416 1.16156
1.18425 0.89149 0.85831 0.99555 1.85995 1.20750 1.27890 1.88865
1.23350 0.76608 1.05579 1.01988 1.17920 0.89385 0.89996 1.07625
1.19340 0.95934 0.90568 0.98160 1.20231 0.91821 0.98068 1.08822
1.18155 0.88435 0.93839 0.96458 0.94279 1.21203 0.92108 1.19627
1.21804 0.94779 1.25891 1.00144 0.96352 0.96117 1.70053 1.14447
1.36745 1.37675 0.85875 0.77542 0.78541 0.80745 1.18594 1.22456
1.16645 1.22030 0.98392 0.95320 1.00373 1.22085 0.86925 1.00674
0.96859 1.56705 1.04268 1.05948 1.58024 0.91332 0.86360 0.91959
0.81745 0.91653 0.92326 0.85731 0.87604 0.92502 0.92383 0.92595
0.93516 0.87363 0.80653
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.37 9.82 113.37 1.11 1.49 16
2 O -0.34 -11.56 10.50 -93.51 -0.98 -12.54 16
3 C 0.12 4.58 6.68 22.43 0.15 4.73 16
4 C -0.27 -8.31 8.01 22.38 0.18 -8.13 16
5 C 0.12 3.91 6.67 22.69 0.15 4.06 16
6 O -0.32 -8.49 9.53 -93.55 -0.89 -9.39 16
7 C 0.02 0.30 9.81 113.37 1.11 1.41 16
8 C 0.05 1.95 6.24 38.24 0.24 2.18 16
9 C -0.04 -1.65 5.39 -19.72 -0.11 -1.76 16
10 C -0.17 -7.76 8.67 22.45 0.19 -7.57 16
11 C 0.05 2.44 1.85 -12.24 -0.02 2.41 16
12 H 0.04 1.93 7.19 -2.39 -0.02 1.91 16
13 C -0.51 -30.21 8.33 25.60 0.21 -30.00 16
14 H 0.03 2.27 7.09 -2.91 -0.02 2.25 16
15 C 0.01 0.70 5.45 84.65 0.46 1.16 16
16 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16
17 Si 0.95 44.80 24.27 68.60 1.66 46.47 16
18 H -0.26 -11.57 6.99 99.48 0.70 -10.88 16
19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16
20 H -0.24 -10.48 6.49 99.48 0.65 -9.83 16
21 C -0.12 -5.30 4.70 30.73 0.14 -5.16 16
22 C 0.06 2.05 6.61 86.52 0.57 2.62 16
23 N -0.62 -21.07 6.48 -338.38 -2.19 -23.26 16
24 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16
25 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16
26 H 0.06 1.12 7.67 -2.39 -0.02 1.10 16
27 H 0.17 3.65 4.51 -2.91 -0.01 3.63 16
28 H 0.06 0.86 7.65 -2.39 -0.02 0.84 16
29 H 0.06 0.88 7.65 -2.38 -0.02 0.86 16
30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16
31 H 0.11 5.42 7.18 -2.91 -0.02 5.39 16
32 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16
33 H 0.06 2.43 3.78 -2.38 -0.01 2.42 16
34 H 0.06 2.62 8.09 -2.39 -0.02 2.60 16
35 H 0.05 1.45 8.11 -2.39 -0.02 1.43 16
36 H 0.11 2.85 8.14 -2.38 -0.02 2.84 16
37 H 0.37 10.26 7.95 -89.69 -0.71 9.54 16
Total: -1.00 -74.21 290.81 2.61 -71.60
By element:
Atomic # 1 Polarization: 19.76 SS G_CDS: 0.31 Total: 20.08 kcal
Atomic # 6 Polarization: -36.94 SS G_CDS: 4.40 Total: -32.54 kcal
Atomic # 7 Polarization: -81.79 SS G_CDS: -1.89 Total: -83.68 kcal
Atomic # 8 Polarization: -20.06 SS G_CDS: -1.87 Total: -21.93 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 1.66 Total: 46.47 kcal
Total: -74.21 2.61 -71.60 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084035616.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.685 kcal
(2) G-P(sol) polarization free energy of solvation -74.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds