Wall clock time and date at job start Mon Mar 30 2020 07:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 116.99815 * 2 1 4 4 C 1.38587 * 120.07353 * 180.02562 * 3 2 1 5 5 C 1.38995 * 120.11101 * 179.97438 * 4 3 2 6 6 C 1.38609 * 120.11285 * 359.81849 * 5 4 3 7 7 C 1.38995 * 119.61395 * 0.28701 * 6 5 4 8 8 O 1.35896 * 119.86432 * 179.79762 * 7 6 5 9 9 C 1.42907 * 116.99708 * 180.02562 * 8 7 6 10 10 C 1.38576 * 120.27187 * 359.79983 * 7 6 5 11 11 C 1.50602 * 121.49894 * 180.54475 * 6 5 4 12 12 H 1.09003 * 109.27321 * 99.39452 * 11 6 5 13 13 C 1.50701 * 109.27094 * 218.90547 * 11 6 5 14 14 H 1.08003 * 120.00057 * 359.97438 * 13 11 6 15 15 C 1.37873 * 120.00377 * 179.97438 * 13 11 6 16 16 N 1.31517 * 119.99910 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00219 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47026 * 60.00469 * 17 15 13 19 19 H 1.48503 * 109.46764 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47046 * 300.00067 * 17 15 13 21 21 C 1.52847 * 110.49788 * 339.16246 * 11 6 5 22 22 C 1.53432 * 108.85236 * 51.34137 * 21 11 6 23 23 N 1.39919 * 119.06530 * 179.53519 * 5 4 3 24 24 H 1.08998 * 109.46797 * 300.00132 * 1 2 3 25 25 H 1.08999 * 109.46744 * 60.00118 * 1 2 3 26 26 H 1.08994 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.94761 * 359.97438 * 4 3 2 28 28 H 1.08996 * 109.47479 * 60.00191 * 9 8 7 29 29 H 1.09005 * 109.46905 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.47026 * 299.99843 * 9 8 7 31 31 H 1.07995 * 119.97956 * 179.97438 * 10 7 6 32 32 H 0.97003 * 120.00317 * 179.97438 * 16 15 13 33 33 H 1.08995 * 109.57861 * 171.15196 * 21 11 6 34 34 H 1.09002 * 109.57410 * 291.40511 * 21 11 6 35 35 H 1.08994 * 109.79625 * 56.43196 * 22 21 11 36 36 H 1.08997 * 109.79244 * 177.22270 * 22 21 11 37 37 H 0.97001 * 120.53747 * 346.44599 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4298 1.2852 -0.0005 5 6 4.0616 2.5232 -0.0011 6 6 3.3097 3.6877 -0.0049 7 6 1.9220 3.6092 -0.0021 8 8 1.1798 4.7476 -0.0016 9 6 -0.2411 4.5956 0.0019 10 6 1.2921 2.3748 0.0003 11 6 3.9616 5.0452 -0.0178 12 1 3.9603 5.4353 -1.0356 13 6 3.1839 5.9789 0.8736 14 1 2.3074 5.6230 1.3946 15 6 3.5913 7.2874 1.0241 16 7 4.6590 7.7207 0.3901 17 14 2.6269 8.4449 2.1285 18 1 2.6148 7.9114 3.5142 19 1 3.2662 9.7853 2.1191 20 1 1.2329 8.5584 1.6294 21 6 5.4023 4.9520 0.4842 22 6 6.1278 3.8463 -0.2938 23 7 5.4599 2.5728 0.0083 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0184 0.3796 -0.0005 28 1 -0.5457 4.0471 0.8931 29 1 -0.7117 5.5789 0.0023 30 1 -0.5498 4.0451 -0.8868 31 1 0.2136 2.3194 0.0029 32 1 4.9455 8.6415 0.4956 33 1 5.9077 5.9040 0.3225 34 1 5.4037 4.7138 1.5479 35 1 6.0707 4.0491 -1.3632 36 1 7.1712 3.7996 0.0177 37 1 5.9799 1.7794 0.2108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084035623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:07 Heat of formation + Delta-G solvation = -40.468919 kcal Electronic energy + Delta-G solvation = -20594.490266 eV Core-core repulsion = 17530.654679 eV Total energy + Delta-G solvation = -3063.835587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04727 -38.33565 -37.51660 -34.43123 -33.32271 -30.94494 -29.27670 -28.68181 -27.23975 -25.99424 -25.50716 -22.65920 -21.90095 -21.18601 -18.70552 -18.06452 -16.81503 -16.07409 -15.90629 -15.46234 -15.17504 -14.77994 -14.69114 -14.34076 -14.03247 -13.41092 -13.08193 -12.53117 -12.33616 -12.24107 -12.05215 -11.93717 -11.28228 -10.97855 -10.96131 -10.85204 -10.80453 -10.63192 -10.46255 -9.87079 -9.64179 -9.25596 -8.77695 -8.65233 -8.25730 -7.10662 -6.64277 -5.86054 -3.85150 2.26790 2.29152 3.39362 3.43352 3.46809 3.52858 4.02221 4.40191 4.50364 4.61675 5.21711 5.29247 5.44141 5.48993 5.56017 5.64387 5.65468 5.76172 5.86315 5.97054 5.98091 6.06531 6.23892 6.30363 6.48482 6.69429 6.95067 7.04613 7.07389 7.25846 7.48260 7.74669 7.76222 7.97259 8.03547 8.19965 8.36837 8.44669 8.61716 9.16671 9.75296 11.20971 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.008102 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.361133 B = 3455.288989 C = 4653.402680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.323 6.323 3 C 0.175 3.825 4 C -0.266 4.266 5 C 0.269 3.731 6 C -0.173 4.173 7 C 0.204 3.796 8 O -0.262 6.262 9 C 0.018 3.982 10 C -0.352 4.352 11 C 0.098 3.902 12 H 0.032 0.968 13 C -0.478 4.478 14 H 0.069 0.931 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.279 1.279 21 C -0.123 4.123 22 C 0.117 3.883 23 N -0.746 5.746 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.121 0.879 32 H 0.257 0.743 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 -10.771 -1.374 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.237 6.237 3 C 0.130 3.870 4 C -0.289 4.289 5 C 0.165 3.835 6 C -0.178 4.178 7 C 0.157 3.843 8 O -0.173 6.173 9 C -0.078 4.078 10 C -0.373 4.373 11 C 0.080 3.920 12 H 0.050 0.950 13 C -0.516 4.516 14 H 0.087 0.913 15 C -0.143 4.143 16 N -0.541 5.541 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.161 4.161 22 C -0.007 4.007 23 N -0.376 5.376 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.541 -10.379 -1.443 11.420 hybrid contribution -0.887 0.282 0.718 1.176 sum -5.428 -10.096 -0.725 11.486 Atomic orbital electron populations 1.22910 0.79356 1.02861 1.01176 1.85984 1.20642 1.27808 1.89223 1.18134 0.91292 0.82890 0.94717 1.19494 0.91309 0.96353 1.21766 1.16934 0.83809 0.91376 0.91390 1.19344 0.90081 0.96411 1.12005 1.18413 0.90642 0.84047 0.91209 1.86837 1.16105 1.27357 1.87038 1.22987 0.82223 1.02721 0.99886 1.20884 0.99339 0.92153 1.24887 1.17376 0.91059 0.86447 0.97161 0.95036 1.21238 1.10086 0.94146 1.26170 0.91277 1.24918 0.95244 0.98005 0.96150 1.69852 1.24536 1.16229 1.43455 0.86691 0.80297 0.79961 0.81186 1.20624 1.21631 1.20461 1.21970 0.98716 0.97712 0.97741 1.21809 0.95243 0.84408 0.99251 1.44694 1.02312 1.12161 1.78481 0.93044 0.93057 0.89011 0.86532 0.93774 0.89084 0.93892 0.86163 0.93270 0.88113 0.93638 0.93265 0.92020 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.19 10.50 -19.40 -0.20 -5.40 16 3 C 0.17 3.21 6.68 -39.29 -0.26 2.95 16 4 C -0.27 -4.97 9.81 -39.17 -0.38 -5.36 16 5 C 0.27 5.49 6.47 -83.75 -0.54 4.95 16 6 C -0.17 -4.00 5.48 -104.25 -0.57 -4.58 16 7 C 0.20 4.45 6.26 -39.18 -0.25 4.21 16 8 O -0.26 -5.75 6.97 -19.41 -0.14 -5.89 16 9 C 0.02 0.28 9.81 101.05 0.99 1.28 16 10 C -0.35 -6.56 8.02 -39.29 -0.32 -6.87 16 11 C 0.10 2.50 2.18 -93.05 -0.20 2.30 16 12 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 13 C -0.48 -13.19 7.07 -34.44 -0.24 -13.43 16 14 H 0.07 1.93 5.71 -52.48 -0.30 1.63 16 15 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 16 N -0.90 -25.52 11.34 55.43 0.63 -24.89 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.12 -2.87 5.00 -26.59 -0.13 -3.00 16 22 C 0.12 2.18 7.11 -3.58 -0.03 2.16 16 23 N -0.75 -13.35 5.80 -58.10 -0.34 -13.69 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 31 H 0.12 1.91 4.50 -52.49 -0.24 1.67 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.10 2.56 6.27 -51.93 -0.33 2.23 16 34 H 0.04 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.39 5.74 8.86 -40.82 -0.36 5.38 16 LS Contribution 295.61 15.07 4.45 4.45 Total: -1.00 -30.75 295.61 -6.56 -37.30 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.91 Total: 4.01 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.04 Total: -12.58 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.29 Total: -38.57 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.34 Total: -11.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.75 -6.56 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.167 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds