Wall clock time and date at job start Mon Mar 30 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 116.99815 * 2 1 4 4 C 1.38587 * 120.07353 * 180.02562 * 3 2 1 5 5 C 1.38995 * 120.11101 * 179.97438 * 4 3 2 6 6 C 1.38609 * 120.11285 * 359.81849 * 5 4 3 7 7 C 1.38995 * 119.61395 * 0.28701 * 6 5 4 8 8 O 1.35896 * 119.86432 * 179.79762 * 7 6 5 9 9 C 1.42907 * 116.99708 * 180.02562 * 8 7 6 10 10 C 1.38576 * 120.27187 * 359.79983 * 7 6 5 11 11 C 1.50602 * 121.49894 * 180.54475 * 6 5 4 12 12 H 1.09003 * 109.27321 * 99.39452 * 11 6 5 13 13 C 1.50701 * 109.27094 * 218.90547 * 11 6 5 14 14 H 1.08003 * 120.00057 * 359.97438 * 13 11 6 15 15 C 1.37873 * 120.00377 * 179.97438 * 13 11 6 16 16 N 1.31517 * 119.99910 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00219 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47026 * 60.00469 * 17 15 13 19 19 H 1.48503 * 109.46764 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47046 * 300.00067 * 17 15 13 21 21 C 1.52847 * 110.49788 * 339.16246 * 11 6 5 22 22 C 1.53432 * 108.85236 * 51.34137 * 21 11 6 23 23 N 1.39919 * 119.06530 * 179.53519 * 5 4 3 24 24 H 1.08998 * 109.46797 * 300.00132 * 1 2 3 25 25 H 1.08999 * 109.46744 * 60.00118 * 1 2 3 26 26 H 1.08994 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.94761 * 359.97438 * 4 3 2 28 28 H 1.08996 * 109.47479 * 60.00191 * 9 8 7 29 29 H 1.09005 * 109.46905 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.47026 * 299.99843 * 9 8 7 31 31 H 1.07995 * 119.97956 * 179.97438 * 10 7 6 32 32 H 0.97003 * 120.00317 * 179.97438 * 16 15 13 33 33 H 1.08995 * 109.57861 * 171.15196 * 21 11 6 34 34 H 1.09002 * 109.57410 * 291.40511 * 21 11 6 35 35 H 1.08994 * 109.79625 * 56.43196 * 22 21 11 36 36 H 1.08997 * 109.79244 * 177.22270 * 22 21 11 37 37 H 0.97001 * 120.53747 * 346.44599 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4298 1.2852 -0.0005 5 6 4.0616 2.5232 -0.0011 6 6 3.3097 3.6877 -0.0049 7 6 1.9220 3.6092 -0.0021 8 8 1.1798 4.7476 -0.0016 9 6 -0.2411 4.5956 0.0019 10 6 1.2921 2.3748 0.0003 11 6 3.9616 5.0452 -0.0178 12 1 3.9603 5.4353 -1.0356 13 6 3.1839 5.9789 0.8736 14 1 2.3074 5.6230 1.3946 15 6 3.5913 7.2874 1.0241 16 7 4.6590 7.7207 0.3901 17 14 2.6269 8.4449 2.1285 18 1 2.6148 7.9114 3.5142 19 1 3.2662 9.7853 2.1191 20 1 1.2329 8.5584 1.6294 21 6 5.4023 4.9520 0.4842 22 6 6.1278 3.8463 -0.2938 23 7 5.4599 2.5728 0.0083 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0184 0.3796 -0.0005 28 1 -0.5457 4.0471 0.8931 29 1 -0.7117 5.5789 0.0023 30 1 -0.5498 4.0451 -0.8868 31 1 0.2136 2.3194 0.0029 32 1 4.9455 8.6415 0.4956 33 1 5.9077 5.9040 0.3225 34 1 5.4037 4.7138 1.5479 35 1 6.0707 4.0491 -1.3632 36 1 7.1712 3.7996 0.0177 37 1 5.9799 1.7794 0.2108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084035623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:06 Heat of formation + Delta-G solvation = -60.929230 kcal Electronic energy + Delta-G solvation = -20595.377491 eV Core-core repulsion = 17530.654679 eV Total energy + Delta-G solvation = -3064.722812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52518 -39.68140 -39.06993 -36.05453 -35.08344 -32.81459 -30.80260 -30.10477 -28.47886 -27.47573 -27.18660 -24.37705 -23.47815 -22.77406 -20.33960 -19.50356 -18.55685 -17.76621 -17.28611 -16.92122 -16.59875 -16.38473 -16.11512 -15.94732 -15.43635 -14.93046 -14.76173 -14.23453 -13.95584 -13.82805 -13.45087 -13.20469 -12.87236 -12.76994 -12.55689 -12.41371 -12.27065 -12.21993 -12.02638 -11.72885 -11.38996 -11.04404 -10.65898 -10.36667 -10.15805 -8.63770 -8.20440 -7.94729 -6.01405 0.75960 0.76698 1.42879 1.44320 1.51605 2.27250 2.51375 2.65255 2.98506 3.02080 3.35864 4.19592 4.21732 4.31388 4.38779 4.43624 4.43716 4.46302 4.52832 4.56861 4.60752 4.72462 4.76455 4.76591 4.90367 5.11343 5.29499 5.39597 5.47090 5.52747 5.73155 5.80815 5.98768 6.17569 6.42072 6.47707 6.54072 6.90758 7.03221 7.13710 7.61161 9.09338 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.008102 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.361133 B = 3455.288989 C = 4653.402680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.183 3.817 4 C -0.270 4.270 5 C 0.265 3.735 6 C -0.221 4.221 7 C 0.191 3.809 8 O -0.302 6.302 9 C 0.010 3.990 10 C -0.349 4.349 11 C 0.101 3.899 12 H -0.014 1.014 13 C -0.487 4.487 14 H 0.061 0.939 15 C 0.007 3.993 16 N -0.925 5.925 17 Si 0.946 3.054 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.115 4.115 22 C 0.127 3.873 23 N -0.736 5.736 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.125 0.875 27 H 0.140 0.860 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.148 0.852 32 H 0.256 0.744 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -12.957 -0.958 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.137 3.863 4 C -0.293 4.293 5 C 0.160 3.840 6 C -0.226 4.226 7 C 0.143 3.857 8 O -0.214 6.214 9 C -0.085 4.085 10 C -0.370 4.370 11 C 0.082 3.918 12 H 0.004 0.996 13 C -0.525 4.525 14 H 0.079 0.921 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.773 3.227 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.154 4.154 22 C 0.003 3.997 23 N -0.368 5.368 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.158 0.842 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.720 -12.598 -1.022 13.873 hybrid contribution -0.662 0.855 0.558 1.217 sum -6.382 -11.743 -0.464 13.373 Atomic orbital electron populations 1.23303 0.76796 1.05428 1.01913 1.85995 1.23226 1.26311 1.88603 1.18270 0.91461 0.83665 0.92907 1.19708 0.91994 0.96302 1.21292 1.17051 0.84657 0.91279 0.90972 1.19320 0.91395 0.95904 1.15980 1.18610 0.90491 0.85076 0.91481 1.86711 1.18939 1.28493 1.87232 1.23270 0.79376 1.04177 1.01669 1.21055 1.00767 0.91005 1.24152 1.17175 0.92450 0.87973 0.94157 0.99591 1.21491 1.10044 0.94912 1.26058 0.92066 1.25625 0.96235 0.99485 0.97596 1.69993 1.25687 1.16304 1.44688 0.85792 0.79227 0.78142 0.79525 1.20291 1.21225 1.19863 1.21731 0.98048 0.98396 0.97195 1.21643 0.96498 0.83258 0.98280 1.44575 1.01687 1.12499 1.78012 0.92356 0.92188 0.85709 0.84175 0.92131 0.88026 0.91755 0.83418 0.93474 0.90719 0.95323 0.93645 0.88288 0.75140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -9.39 10.50 -92.35 -0.97 -10.36 16 3 C 0.18 6.28 6.68 22.46 0.15 6.43 16 4 C -0.27 -9.52 9.81 22.53 0.22 -9.30 16 5 C 0.27 10.66 6.47 38.12 0.25 10.91 16 6 C -0.22 -10.43 5.48 -19.62 -0.11 -10.54 16 7 C 0.19 8.34 6.26 22.53 0.14 8.48 16 8 O -0.30 -13.41 6.97 -92.38 -0.64 -14.05 16 9 C 0.01 0.31 9.81 113.37 1.11 1.42 16 10 C -0.35 -12.39 8.02 22.46 0.18 -12.21 16 11 C 0.10 5.40 2.18 -12.37 -0.03 5.38 16 12 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 13 C -0.49 -27.93 7.07 25.60 0.18 -27.75 16 14 H 0.06 3.54 5.71 -2.91 -0.02 3.53 16 15 C 0.01 0.40 5.30 84.65 0.45 0.85 16 16 N -0.93 -54.53 11.34 21.45 0.24 -54.29 16 17 Si 0.95 45.43 29.54 68.60 2.03 47.46 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 21 C -0.11 -5.57 5.00 30.69 0.15 -5.42 16 22 C 0.13 4.73 7.11 86.44 0.61 5.34 16 23 N -0.74 -25.40 5.80 -337.73 -1.96 -27.35 16 24 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 25 H 0.06 1.06 7.66 -2.39 -0.02 1.05 16 26 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.06 1.63 7.65 -2.39 -0.02 1.61 16 29 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.06 1.67 7.65 -2.39 -0.02 1.65 16 31 H 0.15 4.24 4.50 -2.91 -0.01 4.23 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.07 3.98 6.27 -2.39 -0.01 3.96 16 34 H 0.03 1.43 8.12 -2.39 -0.02 1.41 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.41 11.01 8.86 -92.71 -0.82 10.19 16 Total: -1.00 -69.37 295.61 3.40 -65.97 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.27 Total: 17.54 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 4.43 Total: -24.91 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.71 Total: -81.64 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.61 Total: -24.41 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.37 3.40 -65.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084035623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.042 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds