Wall clock time and date at job start Mon Mar 30 2020 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36095 * 117.00089 * 2 1 4 4 C 1.38384 * 119.99497 * 0.02562 * 3 2 1 5 5 C 1.38609 * 120.33529 * 179.97438 * 4 3 2 6 6 C 1.38607 * 119.68191 * 0.17359 * 5 4 3 7 7 C 1.38980 * 120.15242 * 359.78515 * 6 5 4 8 8 C 1.38449 * 120.07088 * 0.10385 * 7 6 5 9 9 O 1.35993 * 120.12750 * 180.02562 * 8 7 6 10 10 C 1.42901 * 116.99335 * 359.97438 * 9 8 7 11 11 N 1.40199 * 120.80241 * 179.73754 * 6 5 4 12 12 C 1.46922 * 118.91631 * 13.43122 * 11 6 5 13 13 C 1.53431 * 107.78412 * 315.39757 * 12 11 6 14 14 H 1.09004 * 109.57510 * 303.31589 * 13 12 11 15 15 C 1.50694 * 109.57740 * 183.05762 * 13 12 11 16 16 H 1.08000 * 120.00563 * 240.25614 * 15 13 12 17 17 C 1.37885 * 119.99902 * 60.25778 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.50663 * 118.78930 * 180.25380 * 5 4 3 24 24 H 1.08998 * 109.47042 * 59.99984 * 1 2 3 25 25 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47259 * 300.00251 * 1 2 3 27 27 H 1.07997 * 119.83391 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.97154 * 180.14413 * 7 6 5 29 29 H 1.08996 * 109.47092 * 299.99538 * 10 9 8 30 30 H 1.08991 * 109.47600 * 59.99991 * 10 9 8 31 31 H 1.09002 * 109.46447 * 180.02562 * 10 9 8 32 32 H 0.97005 * 120.54519 * 193.41404 * 11 6 5 33 33 H 1.09003 * 109.80058 * 195.82732 * 12 11 6 34 34 H 1.08999 * 109.84777 * 74.99527 * 12 11 6 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.09006 * 109.17847 * 80.24350 * 23 5 4 37 37 H 1.09001 * 109.39115 * 320.75852 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2931 2.3731 0.0005 5 6 1.9151 3.6119 0.0011 6 6 3.2992 3.6849 -0.0026 7 6 4.0597 2.5216 -0.0022 8 6 3.4364 1.2854 -0.0004 9 8 4.1794 0.1464 0.0004 10 6 5.6003 0.2988 -0.0012 11 7 3.9526 4.9253 -0.0076 12 6 3.1778 6.1377 0.2897 13 6 1.8604 6.0554 -0.4926 14 1 2.0733 5.9363 -1.5549 15 6 1.0647 7.3166 -0.2754 16 1 0.0827 7.2655 0.1712 17 6 1.5903 8.5360 -0.6471 18 7 2.7863 8.5984 -1.1906 19 14 0.6036 10.0992 -0.3786 20 1 -0.2280 10.3719 -1.5783 21 1 -0.2762 9.9320 0.8059 22 1 1.5307 11.2365 -0.1500 23 6 1.0606 4.8528 0.0075 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2148 2.3134 0.0005 28 1 5.1380 2.5820 -0.0027 29 1 5.9058 0.8471 -0.8923 30 1 5.9077 0.8497 0.8876 31 1 6.0711 -0.6843 -0.0008 32 1 4.9009 4.9822 -0.2040 33 1 3.7378 7.0194 -0.0220 34 1 2.9699 6.1912 1.3583 35 1 3.1558 9.4561 -1.4524 36 1 0.7179 5.0463 1.0240 37 1 0.1969 4.7008 -0.6399 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084784648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:20 Heat of formation + Delta-G solvation = -51.080174 kcal Electronic energy + Delta-G solvation = -19906.445144 eV Core-core repulsion = 16842.149419 eV Total energy + Delta-G solvation = -3064.295725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20457 -38.08009 -37.97251 -34.72360 -33.06342 -31.78159 -29.41755 -28.55177 -27.07258 -26.91465 -24.82442 -23.42361 -21.77590 -21.48188 -18.90597 -17.98847 -16.92880 -16.55902 -16.13172 -15.72021 -15.18297 -14.96115 -14.64154 -14.24882 -14.04261 -13.62380 -13.36135 -12.71759 -12.43856 -12.37232 -12.17185 -11.96402 -11.58380 -11.23051 -11.18390 -10.97932 -10.92856 -10.88668 -10.49123 -10.25756 -9.75590 -9.31555 -9.12899 -8.71644 -8.45448 -7.81628 -6.37159 -6.11412 -4.17651 1.79968 2.16393 3.24954 3.32192 3.35304 3.56251 3.70979 4.27487 4.30525 4.39731 5.15268 5.20737 5.24590 5.29205 5.34009 5.39155 5.52660 5.61395 5.65485 5.78964 5.82737 5.99558 6.26233 6.37829 6.42820 6.69334 6.79503 6.88283 6.96019 7.10937 7.13764 7.42096 7.51754 7.75912 7.85311 7.98190 8.11197 8.36701 8.58938 8.86584 9.47834 10.94742 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.005059 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.060223 B = 5533.398091 C = 6368.002696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.028 3.972 4 C -0.129 4.129 5 C -0.139 4.139 6 C 0.236 3.764 7 C -0.259 4.259 8 C 0.130 3.870 9 O -0.311 6.311 10 C 0.030 3.970 11 N -0.745 5.745 12 C 0.122 3.878 13 C 0.036 3.964 14 H 0.033 0.967 15 C -0.512 4.512 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.273 1.273 22 H -0.286 1.286 23 C -0.063 4.063 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.388 0.612 33 H 0.107 0.893 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -12.687 2.461 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C -0.018 4.018 4 C -0.148 4.148 5 C -0.143 4.143 6 C 0.130 3.870 7 C -0.283 4.283 8 C 0.085 3.915 9 O -0.225 6.225 10 C -0.066 4.066 11 N -0.372 5.372 12 C -0.001 4.001 13 C 0.017 3.983 14 H 0.051 0.949 15 C -0.551 4.551 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.198 1.198 22 H -0.212 1.212 23 C -0.100 4.100 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.221 0.779 33 H 0.125 0.875 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.958 -12.739 2.444 13.118 hybrid contribution -0.076 1.266 -0.006 1.268 sum 1.882 -11.473 2.438 11.879 Atomic orbital electron populations 1.22900 0.79796 1.02849 1.00930 1.86086 1.19947 1.26408 1.90684 1.17791 0.88738 0.84745 1.10530 1.20781 0.99173 0.90658 1.04227 1.19475 0.92144 0.95293 1.07428 1.17380 0.90958 0.85684 0.93020 1.20424 0.99284 0.90301 1.18273 1.17796 0.87847 0.85068 1.00834 1.86117 1.18111 1.28870 1.89372 1.22952 0.79496 1.02994 1.01135 1.45255 1.10642 1.04298 1.76991 1.22050 0.95332 0.85460 0.97295 1.18941 0.91726 0.91694 0.95957 0.94874 1.21155 1.02441 0.90854 1.40658 0.92252 1.25002 0.95069 0.99198 0.94729 1.69839 1.16007 1.25445 1.41871 0.86546 0.79907 0.82661 0.78639 1.20626 1.19819 1.21209 1.20471 0.97030 0.91853 1.00667 0.93207 0.89121 0.93254 0.85440 0.85613 0.92998 0.93021 0.88895 0.77861 0.87460 0.94895 0.92807 0.92186 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.27 10.28 -34.56 -0.36 -5.62 16 3 C 0.03 0.50 6.69 -39.19 -0.26 0.24 16 4 C -0.13 -2.29 8.66 -39.39 -0.34 -2.63 16 5 C -0.14 -2.76 5.76 -104.37 -0.60 -3.36 16 6 C 0.24 4.59 6.48 -83.62 -0.54 4.05 16 7 C -0.26 -4.47 8.87 -39.23 -0.35 -4.82 16 8 C 0.13 2.31 6.70 -39.17 -0.26 2.04 16 9 O -0.31 -5.05 10.28 -34.23 -0.35 -5.40 16 10 C 0.03 0.34 9.81 101.05 0.99 1.33 16 11 N -0.74 -14.63 5.81 -58.03 -0.34 -14.97 16 12 C 0.12 2.77 6.20 -3.59 -0.02 2.74 16 13 C 0.04 0.88 2.26 -91.63 -0.21 0.67 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.51 -13.47 8.55 -34.44 -0.29 -13.77 16 16 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.28 11.34 55.43 0.63 -23.65 16 19 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.06 -1.34 5.02 -27.98 -0.14 -1.48 16 24 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 27 H 0.13 1.96 6.27 -52.49 -0.33 1.63 16 28 H 0.13 1.84 6.30 -52.48 -0.33 1.51 16 29 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 30 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.39 6.66 8.86 -40.82 -0.36 6.30 16 33 H 0.11 2.65 6.07 -51.93 -0.32 2.33 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.06 1.26 8.11 -51.93 -0.42 0.84 16 37 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -29.38 301.70 -7.03 -36.41 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.00 Total: 5.33 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.13 Total: -12.09 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.29 Total: -38.62 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.71 Total: -11.02 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.38 -7.03 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.674 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds