Wall clock time and date at job start Mon Mar 30 2020 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36095 * 117.00089 * 2 1 4 4 C 1.38384 * 119.99497 * 0.02562 * 3 2 1 5 5 C 1.38609 * 120.33529 * 179.97438 * 4 3 2 6 6 C 1.38607 * 119.68191 * 0.17359 * 5 4 3 7 7 C 1.38980 * 120.15242 * 359.78515 * 6 5 4 8 8 C 1.38449 * 120.07088 * 0.10385 * 7 6 5 9 9 O 1.35993 * 120.12750 * 180.02562 * 8 7 6 10 10 C 1.42901 * 116.99335 * 359.97438 * 9 8 7 11 11 N 1.40199 * 120.80241 * 179.73754 * 6 5 4 12 12 C 1.46922 * 118.91631 * 13.43122 * 11 6 5 13 13 C 1.53431 * 107.78412 * 315.39757 * 12 11 6 14 14 H 1.09004 * 109.57510 * 303.31589 * 13 12 11 15 15 C 1.50694 * 109.57740 * 183.05762 * 13 12 11 16 16 H 1.08000 * 120.00563 * 240.25614 * 15 13 12 17 17 C 1.37885 * 119.99902 * 60.25778 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.50663 * 118.78930 * 180.25380 * 5 4 3 24 24 H 1.08998 * 109.47042 * 59.99984 * 1 2 3 25 25 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47259 * 300.00251 * 1 2 3 27 27 H 1.07997 * 119.83391 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.97154 * 180.14413 * 7 6 5 29 29 H 1.08996 * 109.47092 * 299.99538 * 10 9 8 30 30 H 1.08991 * 109.47600 * 59.99991 * 10 9 8 31 31 H 1.09002 * 109.46447 * 180.02562 * 10 9 8 32 32 H 0.97005 * 120.54519 * 193.41404 * 11 6 5 33 33 H 1.09003 * 109.80058 * 195.82732 * 12 11 6 34 34 H 1.08999 * 109.84777 * 74.99527 * 12 11 6 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.09006 * 109.17847 * 80.24350 * 23 5 4 37 37 H 1.09001 * 109.39115 * 320.75852 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2931 2.3731 0.0005 5 6 1.9151 3.6119 0.0011 6 6 3.2992 3.6849 -0.0026 7 6 4.0597 2.5216 -0.0022 8 6 3.4364 1.2854 -0.0004 9 8 4.1794 0.1464 0.0004 10 6 5.6003 0.2988 -0.0012 11 7 3.9526 4.9253 -0.0076 12 6 3.1778 6.1377 0.2897 13 6 1.8604 6.0554 -0.4926 14 1 2.0733 5.9363 -1.5549 15 6 1.0647 7.3166 -0.2754 16 1 0.0827 7.2655 0.1712 17 6 1.5903 8.5360 -0.6471 18 7 2.7863 8.5984 -1.1906 19 14 0.6036 10.0992 -0.3786 20 1 -0.2280 10.3719 -1.5783 21 1 -0.2762 9.9320 0.8059 22 1 1.5307 11.2365 -0.1500 23 6 1.0606 4.8528 0.0075 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2148 2.3134 0.0005 28 1 5.1380 2.5820 -0.0027 29 1 5.9058 0.8471 -0.8923 30 1 5.9077 0.8497 0.8876 31 1 6.0711 -0.6843 -0.0008 32 1 4.9009 4.9822 -0.2040 33 1 3.7378 7.0194 -0.0220 34 1 2.9699 6.1912 1.3583 35 1 3.1558 9.4561 -1.4524 36 1 0.7179 5.0463 1.0240 37 1 0.1969 4.7008 -0.6399 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084784648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:20 Heat of formation + Delta-G solvation = -69.234771 kcal Electronic energy + Delta-G solvation = -19907.232386 eV Core-core repulsion = 16842.149419 eV Total energy + Delta-G solvation = -3065.082968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54970 -39.48410 -39.23298 -36.34605 -34.73646 -33.52596 -30.84641 -30.03250 -28.28612 -27.95280 -26.66912 -25.03188 -23.27647 -22.91462 -20.53503 -19.29369 -18.50831 -18.20887 -17.63908 -16.88990 -16.52748 -16.50212 -16.02265 -15.64629 -15.35069 -15.07627 -14.96005 -14.35017 -14.07371 -13.85772 -13.62840 -13.25994 -12.94416 -12.78757 -12.62881 -12.56167 -12.33789 -12.11448 -11.96514 -11.94332 -11.48443 -11.12960 -10.99493 -10.51963 -10.12365 -9.22299 -8.13332 -7.84198 -6.25949 0.41122 0.73939 1.43955 1.45609 1.55350 2.40644 2.44457 2.55068 2.82447 2.85776 3.18527 3.89639 4.12005 4.28139 4.34817 4.45043 4.45472 4.49428 4.54202 4.60025 4.65369 4.69765 4.76746 4.80495 4.87214 5.02736 5.09200 5.16663 5.32546 5.54960 5.62754 5.65236 5.84425 5.91993 6.23247 6.25182 6.54064 6.76885 6.84187 7.12192 7.42672 8.92711 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.005059 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.060223 B = 5533.398091 C = 6368.002696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C 0.024 3.976 4 C -0.125 4.125 5 C -0.165 4.165 6 C 0.214 3.786 7 C -0.249 4.249 8 C 0.126 3.874 9 O -0.325 6.325 10 C 0.019 3.981 11 N -0.744 5.744 12 C 0.138 3.862 13 C 0.035 3.965 14 H -0.005 1.005 15 C -0.533 4.533 16 H 0.058 0.942 17 C 0.017 3.983 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.278 1.278 21 H -0.267 1.267 22 H -0.283 1.283 23 C -0.053 4.053 24 H 0.055 0.945 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.400 0.600 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -13.958 2.907 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C -0.022 4.022 4 C -0.145 4.145 5 C -0.170 4.170 6 C 0.109 3.891 7 C -0.272 4.272 8 C 0.080 3.920 9 O -0.239 6.239 10 C -0.075 4.075 11 N -0.374 5.374 12 C 0.013 3.987 13 C 0.016 3.984 14 H 0.013 0.987 15 C -0.571 4.571 16 H 0.076 0.924 17 C -0.182 4.182 18 N -0.556 5.556 19 Si 0.783 3.217 20 H -0.204 1.204 21 H -0.191 1.191 22 H -0.208 1.208 23 C -0.090 4.090 24 H 0.074 0.926 25 H 0.137 0.863 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.235 0.765 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.867 -14.050 2.890 14.465 hybrid contribution -0.025 1.484 -0.170 1.494 sum 1.842 -12.565 2.721 12.988 Atomic orbital electron populations 1.23230 0.77455 1.05067 1.01632 1.86074 1.22416 1.25692 1.90456 1.18007 0.89281 0.85256 1.09647 1.20890 1.00253 0.89840 1.03478 1.19469 0.92450 0.95369 1.09666 1.17585 0.91197 0.86030 0.94242 1.20580 1.00434 0.89350 1.16865 1.18008 0.88335 0.85655 1.00041 1.86110 1.20458 1.28284 1.89019 1.23307 0.77036 1.05226 1.01962 1.44979 1.10986 1.03598 1.77855 1.21588 0.94654 0.86060 0.96375 1.18850 0.92980 0.92613 0.93952 0.98679 1.21470 1.02725 0.92027 1.40897 0.92360 1.25734 0.95979 1.02066 0.94439 1.69964 1.17179 1.26084 1.42375 0.85567 0.78569 0.78981 0.78613 1.20396 1.19147 1.20832 1.20276 0.96932 0.91504 1.00329 0.92591 0.86284 0.92389 0.83470 0.83137 0.92199 0.92063 0.86051 0.76532 0.89621 0.95535 0.92774 0.92340 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.33 -10.36 10.28 -80.75 -0.83 -11.19 16 3 C 0.02 0.83 6.69 22.52 0.15 0.98 16 4 C -0.13 -4.31 8.66 22.39 0.19 -4.12 16 5 C -0.16 -6.53 5.76 -19.70 -0.11 -6.64 16 6 C 0.21 8.27 6.48 38.07 0.25 8.52 16 7 C -0.25 -8.22 8.87 22.50 0.20 -8.02 16 8 C 0.13 4.24 6.70 22.54 0.15 4.39 16 9 O -0.32 -9.80 10.28 -79.60 -0.82 -10.62 16 10 C 0.02 0.38 9.81 113.37 1.11 1.49 16 11 N -0.74 -29.50 5.81 -337.52 -1.96 -31.46 16 12 C 0.14 6.43 6.20 86.44 0.54 6.97 16 13 C 0.04 1.77 2.26 -11.45 -0.03 1.75 16 14 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 15 C -0.53 -28.58 8.55 25.60 0.22 -28.36 16 16 H 0.06 3.05 7.75 -2.91 -0.02 3.03 16 17 C 0.02 0.90 5.30 84.66 0.45 1.35 16 18 N -0.92 -50.84 11.34 21.45 0.24 -50.59 16 19 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.05 -2.29 5.02 29.79 0.15 -2.14 16 24 H 0.06 1.13 7.66 -2.39 -0.02 1.12 16 25 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 27 H 0.15 4.30 6.27 -2.91 -0.02 4.29 16 28 H 0.15 4.07 6.30 -2.91 -0.02 4.05 16 29 H 0.06 1.10 7.67 -2.39 -0.02 1.08 16 30 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 31 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.40 13.68 8.86 -92.70 -0.82 12.85 16 33 H 0.09 4.38 6.07 -2.39 -0.01 4.37 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.06 2.48 8.11 -2.38 -0.02 2.46 16 37 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 Total: -1.00 -63.32 301.70 3.31 -60.01 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.27 Total: 21.95 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 4.38 Total: -22.27 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -1.72 Total: -82.06 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.65 Total: -21.81 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -63.32 3.31 -60.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.220 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds