Wall clock time and date at job start Mon Mar 30 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36096 * 117.00223 * 2 1 4 4 C 1.38372 * 119.99602 * 0.02562 * 3 2 1 5 5 C 1.38605 * 120.33957 * 180.02562 * 4 3 2 6 6 C 1.38609 * 119.67744 * 359.85608 * 5 4 3 7 7 C 1.38980 * 120.15276 * 0.19707 * 6 5 4 8 8 C 1.38443 * 120.07183 * 359.87079 * 7 6 5 9 9 O 1.35991 * 120.12832 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99725 * 0.02803 * 9 8 7 11 11 N 1.40203 * 120.80154 * 180.46028 * 6 5 4 12 12 C 1.46918 * 118.91183 * 346.39662 * 11 6 5 13 13 C 1.53435 * 107.78407 * 44.66307 * 12 11 6 14 14 H 1.09000 * 109.57112 * 56.58347 * 13 12 11 15 15 C 1.50699 * 109.57141 * 176.83696 * 13 12 11 16 16 H 1.07995 * 119.99775 * 120.00486 * 15 13 12 17 17 C 1.37876 * 120.00311 * 300.00011 * 15 13 12 18 18 N 1.31517 * 119.99892 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00027 * 180.02562 * 17 15 13 20 20 H 1.48489 * 109.47507 * 59.99843 * 19 17 15 21 21 H 1.48498 * 109.47028 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46768 * 299.99524 * 19 17 15 23 23 C 1.50623 * 118.85091 * 179.58970 * 5 4 3 24 24 H 1.09000 * 109.47206 * 59.99550 * 1 2 3 25 25 H 1.08994 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46463 * 299.99955 * 1 2 3 27 27 H 1.08002 * 119.83311 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.96730 * 179.86998 * 7 6 5 29 29 H 1.09000 * 109.46998 * 299.99683 * 10 9 8 30 30 H 1.09005 * 109.47410 * 59.99507 * 10 9 8 31 31 H 1.08997 * 109.47151 * 179.97438 * 10 9 8 32 32 H 0.96993 * 120.54281 * 166.42237 * 11 6 5 33 33 H 1.09001 * 109.79733 * 164.23291 * 12 11 6 34 34 H 1.08995 * 109.80185 * 285.09501 * 12 11 6 35 35 H 0.96999 * 119.99883 * 180.02562 * 18 17 15 36 36 H 1.09007 * 109.26501 * 279.62072 * 23 5 4 37 37 H 1.09000 * 109.26859 * 39.08017 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2933 2.3731 0.0005 5 6 1.9151 3.6118 0.0000 6 6 3.2993 3.6848 0.0020 7 6 4.0597 2.5215 0.0003 8 6 3.4365 1.2853 -0.0006 9 8 4.1794 0.1462 -0.0028 10 6 5.6003 0.2985 -0.0034 11 7 3.9528 4.9251 0.0111 12 6 3.1783 6.1382 -0.2838 13 6 1.8606 6.0546 0.4978 14 1 2.0732 5.9313 1.5597 15 6 1.0664 7.3175 0.2850 16 1 0.0829 7.2686 -0.1582 17 6 1.5955 8.5354 0.6564 18 7 2.7934 8.5950 1.1958 19 14 0.6107 10.1008 0.3933 20 1 -0.6636 10.0172 1.1510 21 1 1.3964 11.2663 0.8722 22 1 0.3168 10.2634 -1.0533 23 6 1.0622 4.8532 -0.0088 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.2149 2.3134 0.0014 28 1 5.1381 2.5818 -0.0003 29 1 5.9063 0.8495 -0.8927 30 1 5.9074 0.8469 0.8872 31 1 6.0711 -0.6845 -0.0047 32 1 4.9008 4.9814 0.2086 33 1 3.7383 7.0192 0.0299 34 1 2.9707 6.1931 -1.3524 35 1 3.1655 9.4518 1.4574 36 1 0.7225 5.0490 -1.0260 37 1 0.1966 4.6995 0.6355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084784650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:23 Heat of formation + Delta-G solvation = -50.963994 kcal Electronic energy + Delta-G solvation = -19907.035601 eV Core-core repulsion = 16842.744914 eV Total energy + Delta-G solvation = -3064.290687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20533 -38.08053 -37.97301 -34.72374 -33.06088 -31.78218 -29.41615 -28.55037 -27.07233 -26.91455 -24.82581 -23.41827 -21.77447 -21.48110 -18.90883 -17.98793 -16.92887 -16.55776 -16.12898 -15.71997 -15.18198 -14.96104 -14.64618 -14.24918 -14.04218 -13.61950 -13.35766 -12.71650 -12.43605 -12.37469 -12.17015 -11.96147 -11.58283 -11.22877 -11.18261 -10.96517 -10.92717 -10.89282 -10.51041 -10.25677 -9.75499 -9.31596 -9.12754 -8.71857 -8.45153 -7.81616 -6.37051 -6.11077 -4.17515 1.80018 2.16403 3.26575 3.31625 3.34221 3.56244 3.71000 4.27425 4.30845 4.39787 5.15279 5.20828 5.24620 5.29180 5.34033 5.39176 5.52683 5.61392 5.65597 5.79009 5.82786 5.99616 6.26226 6.37832 6.43033 6.69475 6.79670 6.88412 6.96104 7.11010 7.13857 7.42140 7.51712 7.76110 7.85386 7.98323 8.11395 8.36785 8.59182 8.86425 9.47913 10.94953 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030042 B = 0.005059 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.817307 B = 5533.351500 C = 6367.919867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.028 3.972 4 C -0.129 4.129 5 C -0.139 4.139 6 C 0.235 3.765 7 C -0.259 4.259 8 C 0.130 3.870 9 O -0.311 6.311 10 C 0.030 3.970 11 N -0.745 5.745 12 C 0.121 3.879 13 C 0.036 3.964 14 H 0.033 0.967 15 C -0.513 4.513 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.063 4.063 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.388 0.612 33 H 0.108 0.892 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -12.665 -2.469 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C -0.018 4.018 4 C -0.148 4.148 5 C -0.143 4.143 6 C 0.129 3.871 7 C -0.283 4.283 8 C 0.085 3.915 9 O -0.225 6.225 10 C -0.066 4.066 11 N -0.372 5.372 12 C -0.002 4.002 13 C 0.017 3.983 14 H 0.051 0.949 15 C -0.552 4.552 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.100 4.100 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.221 0.779 33 H 0.126 0.874 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.959 -12.715 -2.445 13.095 hybrid contribution -0.083 1.260 -0.009 1.263 sum 1.876 -11.454 -2.454 11.864 Atomic orbital electron populations 1.22899 0.79797 1.02849 1.00929 1.86085 1.19947 1.26409 1.90685 1.17787 0.88737 0.84744 1.10534 1.20776 0.99174 0.90657 1.04230 1.19467 0.92146 0.95288 1.07435 1.17387 0.90966 0.85691 0.93014 1.20424 0.99287 0.90304 1.18269 1.17795 0.87848 0.85067 1.00830 1.86115 1.18112 1.28871 1.89370 1.22953 0.79495 1.02994 1.01134 1.45256 1.10682 1.04252 1.76995 1.22062 0.95367 0.85458 0.97296 1.18943 0.91725 0.91677 0.95923 0.94877 1.21113 1.02305 0.90869 1.40877 0.92306 1.24996 0.95079 0.99186 0.94709 1.69825 1.15846 1.25616 1.41892 0.86601 0.80089 0.82403 0.78617 1.20197 1.21277 1.20187 1.20470 0.97047 0.91864 1.00655 0.93262 0.89121 0.93200 0.85441 0.85614 0.93023 0.92998 0.88893 0.77862 0.87401 0.94916 0.92745 0.92171 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.27 10.28 -34.56 -0.36 -5.62 16 3 C 0.03 0.50 6.69 -39.20 -0.26 0.24 16 4 C -0.13 -2.29 8.66 -39.40 -0.34 -2.63 16 5 C -0.14 -2.76 5.76 -104.39 -0.60 -3.36 16 6 C 0.24 4.59 6.48 -83.62 -0.54 4.05 16 7 C -0.26 -4.47 8.87 -39.23 -0.35 -4.82 16 8 C 0.13 2.31 6.70 -39.17 -0.26 2.05 16 9 O -0.31 -5.05 10.28 -34.22 -0.35 -5.40 16 10 C 0.03 0.34 9.81 101.05 0.99 1.33 16 11 N -0.74 -14.64 5.81 -58.04 -0.34 -14.98 16 12 C 0.12 2.76 6.20 -3.59 -0.02 2.73 16 13 C 0.04 0.89 2.27 -91.61 -0.21 0.68 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.51 -13.49 8.56 -34.44 -0.29 -13.79 16 16 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.27 11.32 55.43 0.63 -23.65 16 19 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 C -0.06 -1.34 5.03 -27.98 -0.14 -1.48 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 27 H 0.13 1.96 6.27 -52.49 -0.33 1.63 16 28 H 0.13 1.85 6.30 -52.48 -0.33 1.52 16 29 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 30 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.39 6.67 8.86 -40.82 -0.36 6.30 16 33 H 0.11 2.67 6.05 -51.93 -0.31 2.35 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.06 1.26 8.12 -51.92 -0.42 0.84 16 37 H 0.06 1.20 8.12 -51.93 -0.42 0.77 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -29.35 301.67 -7.03 -36.37 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.00 Total: 5.39 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.13 Total: -12.10 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.29 Total: -38.63 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.71 Total: -11.02 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.35 -7.03 -36.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.591 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds