Wall clock time and date at job start Mon Mar 30 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36096 * 117.00223 * 2 1 4 4 C 1.38372 * 119.99602 * 0.02562 * 3 2 1 5 5 C 1.38605 * 120.33957 * 180.02562 * 4 3 2 6 6 C 1.38609 * 119.67744 * 359.85608 * 5 4 3 7 7 C 1.38980 * 120.15276 * 0.19707 * 6 5 4 8 8 C 1.38443 * 120.07183 * 359.87079 * 7 6 5 9 9 O 1.35991 * 120.12832 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99725 * 0.02803 * 9 8 7 11 11 N 1.40203 * 120.80154 * 180.46028 * 6 5 4 12 12 C 1.46918 * 118.91183 * 346.39662 * 11 6 5 13 13 C 1.53435 * 107.78407 * 44.66307 * 12 11 6 14 14 H 1.09000 * 109.57112 * 56.58347 * 13 12 11 15 15 C 1.50699 * 109.57141 * 176.83696 * 13 12 11 16 16 H 1.07995 * 119.99775 * 120.00486 * 15 13 12 17 17 C 1.37876 * 120.00311 * 300.00011 * 15 13 12 18 18 N 1.31517 * 119.99892 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00027 * 180.02562 * 17 15 13 20 20 H 1.48489 * 109.47507 * 59.99843 * 19 17 15 21 21 H 1.48498 * 109.47028 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46768 * 299.99524 * 19 17 15 23 23 C 1.50623 * 118.85091 * 179.58970 * 5 4 3 24 24 H 1.09000 * 109.47206 * 59.99550 * 1 2 3 25 25 H 1.08994 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46463 * 299.99955 * 1 2 3 27 27 H 1.08002 * 119.83311 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.96730 * 179.86998 * 7 6 5 29 29 H 1.09000 * 109.46998 * 299.99683 * 10 9 8 30 30 H 1.09005 * 109.47410 * 59.99507 * 10 9 8 31 31 H 1.08997 * 109.47151 * 179.97438 * 10 9 8 32 32 H 0.96993 * 120.54281 * 166.42237 * 11 6 5 33 33 H 1.09001 * 109.79733 * 164.23291 * 12 11 6 34 34 H 1.08995 * 109.80185 * 285.09501 * 12 11 6 35 35 H 0.96999 * 119.99883 * 180.02562 * 18 17 15 36 36 H 1.09007 * 109.26501 * 279.62072 * 23 5 4 37 37 H 1.09000 * 109.26859 * 39.08017 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2933 2.3731 0.0005 5 6 1.9151 3.6118 0.0000 6 6 3.2993 3.6848 0.0020 7 6 4.0597 2.5215 0.0003 8 6 3.4365 1.2853 -0.0006 9 8 4.1794 0.1462 -0.0028 10 6 5.6003 0.2985 -0.0034 11 7 3.9528 4.9251 0.0111 12 6 3.1783 6.1382 -0.2838 13 6 1.8606 6.0546 0.4978 14 1 2.0732 5.9313 1.5597 15 6 1.0664 7.3175 0.2850 16 1 0.0829 7.2686 -0.1582 17 6 1.5955 8.5354 0.6564 18 7 2.7934 8.5950 1.1958 19 14 0.6107 10.1008 0.3933 20 1 -0.6636 10.0172 1.1510 21 1 1.3964 11.2663 0.8722 22 1 0.3168 10.2634 -1.0533 23 6 1.0622 4.8532 -0.0088 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.2149 2.3134 0.0014 28 1 5.1381 2.5818 -0.0003 29 1 5.9063 0.8495 -0.8927 30 1 5.9074 0.8469 0.8872 31 1 6.0711 -0.6845 -0.0047 32 1 4.9008 4.9814 0.2086 33 1 3.7383 7.0192 0.0299 34 1 2.9707 6.1931 -1.3524 35 1 3.1655 9.4518 1.4574 36 1 0.7225 5.0490 -1.0260 37 1 0.1966 4.6995 0.6355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084784650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:23 Heat of formation + Delta-G solvation = -69.085761 kcal Electronic energy + Delta-G solvation = -19907.821420 eV Core-core repulsion = 16842.744914 eV Total energy + Delta-G solvation = -3065.076506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55114 -39.48541 -39.23359 -36.34635 -34.73460 -33.52593 -30.84551 -30.03179 -28.28661 -27.95308 -26.66972 -25.02742 -23.27512 -22.91484 -20.53883 -19.29359 -18.50514 -18.20792 -17.63898 -16.89016 -16.52808 -16.50548 -16.02301 -15.64536 -15.34952 -15.07479 -14.95647 -14.34441 -14.07587 -13.85746 -13.62968 -13.25724 -12.93344 -12.78023 -12.62755 -12.57394 -12.34206 -12.11690 -11.96586 -11.95018 -11.48114 -11.12938 -10.99617 -10.51648 -10.12266 -9.22369 -8.12938 -7.84178 -6.25781 0.41104 0.73883 1.45670 1.45900 1.53783 2.40699 2.44544 2.55043 2.82602 2.85678 3.18704 3.89521 4.12102 4.28133 4.34841 4.44968 4.45443 4.49401 4.54145 4.60154 4.65377 4.69708 4.76710 4.80471 4.87253 5.02870 5.09280 5.16713 5.32565 5.54836 5.62734 5.65218 5.84537 5.92128 6.23257 6.25308 6.54103 6.76869 6.84096 7.12295 7.42796 8.92789 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030042 B = 0.005059 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.817307 B = 5533.351500 C = 6367.919867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C 0.024 3.976 4 C -0.125 4.125 5 C -0.165 4.165 6 C 0.214 3.786 7 C -0.249 4.249 8 C 0.126 3.874 9 O -0.325 6.325 10 C 0.019 3.981 11 N -0.744 5.744 12 C 0.137 3.863 13 C 0.036 3.964 14 H -0.005 1.005 15 C -0.534 4.534 16 H 0.058 0.942 17 C 0.017 3.983 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.053 4.053 24 H 0.057 0.943 25 H 0.119 0.881 26 H 0.056 0.944 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.400 0.600 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -13.933 -2.920 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C -0.022 4.022 4 C -0.145 4.145 5 C -0.170 4.170 6 C 0.109 3.891 7 C -0.272 4.272 8 C 0.080 3.920 9 O -0.239 6.239 10 C -0.075 4.075 11 N -0.374 5.374 12 C 0.013 3.987 13 C 0.016 3.984 14 H 0.013 0.987 15 C -0.572 4.572 16 H 0.076 0.924 17 C -0.182 4.182 18 N -0.556 5.556 19 Si 0.783 3.217 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.091 4.091 24 H 0.076 0.924 25 H 0.137 0.863 26 H 0.074 0.926 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.235 0.765 33 H 0.104 0.896 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.860 -14.023 -2.897 14.439 hybrid contribution -0.030 1.477 0.155 1.485 sum 1.830 -12.546 -2.742 12.972 Atomic orbital electron populations 1.23230 0.77455 1.05067 1.01631 1.86074 1.22416 1.25691 1.90457 1.18004 0.89279 0.85256 1.09648 1.20885 1.00253 0.89839 1.03481 1.19462 0.92453 0.95367 1.09670 1.17591 0.91206 0.86034 0.94236 1.20580 1.00437 0.89354 1.16863 1.18007 0.88335 0.85654 1.00037 1.86108 1.20460 1.28284 1.89017 1.23308 0.77034 1.05226 1.01961 1.44980 1.11026 1.03554 1.77862 1.21600 0.94693 0.86066 0.96363 1.18853 0.92983 0.92596 0.93926 0.98681 1.21438 1.02617 0.92039 1.41127 0.92357 1.25729 0.95983 1.02067 0.94408 1.69953 1.17018 1.26212 1.42397 0.85622 0.78676 0.78705 0.78735 1.19842 1.21003 1.19466 1.20275 0.96948 0.91514 1.00318 0.92396 0.86283 0.92586 0.83471 0.83140 0.92067 0.92198 0.86048 0.76536 0.89555 0.95574 0.92764 0.92309 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.33 -10.36 10.28 -80.76 -0.83 -11.19 16 3 C 0.02 0.83 6.69 22.52 0.15 0.98 16 4 C -0.13 -4.32 8.66 22.39 0.19 -4.12 16 5 C -0.16 -6.53 5.76 -19.71 -0.11 -6.64 16 6 C 0.21 8.27 6.48 38.07 0.25 8.52 16 7 C -0.25 -8.22 8.87 22.50 0.20 -8.03 16 8 C 0.13 4.25 6.70 22.54 0.15 4.40 16 9 O -0.32 -9.80 10.28 -79.57 -0.82 -10.62 16 10 C 0.02 0.38 9.81 113.37 1.11 1.49 16 11 N -0.74 -29.53 5.81 -337.52 -1.96 -31.49 16 12 C 0.14 6.42 6.20 86.45 0.54 6.95 16 13 C 0.04 1.79 2.27 -11.43 -0.03 1.77 16 14 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 15 C -0.53 -28.63 8.56 25.60 0.22 -28.41 16 16 H 0.06 3.05 7.75 -2.91 -0.02 3.03 16 17 C 0.02 0.92 5.30 84.65 0.45 1.37 16 18 N -0.92 -50.82 11.32 21.45 0.24 -50.58 16 19 Si 0.96 42.11 29.54 68.60 2.03 44.14 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 C -0.05 -2.30 5.03 29.79 0.15 -2.15 16 24 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 25 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 27 H 0.15 4.31 6.27 -2.91 -0.02 4.29 16 28 H 0.15 4.07 6.30 -2.91 -0.02 4.05 16 29 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 30 H 0.06 1.10 7.67 -2.38 -0.02 1.08 16 31 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.40 13.69 8.86 -92.71 -0.82 12.87 16 33 H 0.09 4.42 6.05 -2.39 -0.01 4.40 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 36 H 0.06 2.49 8.12 -2.38 -0.02 2.47 16 37 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16 Total: -1.00 -63.26 301.67 3.31 -59.95 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.27 Total: 22.11 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.38 Total: -22.32 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -1.72 Total: -82.07 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.65 Total: -21.81 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -63.26 3.31 -59.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.135 kcal (2) G-P(sol) polarization free energy of solvation -63.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds