Wall clock time and date at job start Mon Mar 30 2020 07:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35977 * 116.99737 * 2 1 4 4 C 1.38489 * 119.76878 * 359.97438 * 3 2 1 5 5 C 1.38270 * 119.86249 * 180.02562 * 4 3 2 6 6 C 1.38199 * 119.95097 * 359.86568 * 5 4 3 7 7 O 1.36085 * 119.78072 * 180.02562 * 6 5 4 8 8 C 1.42908 * 116.99830 * 359.97438 * 7 6 5 9 9 C 1.39985 * 120.44163 * 0.03195 * 6 5 4 10 10 C 1.38186 * 119.41647 * 0.22208 * 9 6 5 11 11 C 1.50801 * 122.02737 * 179.22363 * 10 9 6 12 12 C 1.53033 * 109.68634 * 15.76791 * 11 10 9 13 13 H 1.08997 * 109.81371 * 72.26076 * 12 11 10 14 14 C 1.50708 * 109.76927 * 193.01960 * 12 11 10 15 15 H 1.07991 * 119.99789 * 358.48788 * 14 12 11 16 16 C 1.37877 * 120.00008 * 178.48098 * 14 12 11 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.53380 * 107.93621 * 312.63042 * 12 11 10 23 23 N 1.39701 * 117.64040 * 180.30021 * 9 6 5 24 24 H 1.09005 * 109.46803 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47295 * 299.99363 * 1 2 3 26 26 H 1.08994 * 109.47505 * 60.00002 * 1 2 3 27 27 H 1.07997 * 120.06764 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.02661 * 179.84191 * 5 4 3 29 29 H 1.09004 * 109.47046 * 299.99928 * 8 7 6 30 30 H 1.08998 * 109.46977 * 60.00046 * 8 7 6 31 31 H 1.08994 * 109.46779 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.44056 * 255.69798 * 11 10 9 33 33 H 1.08996 * 109.43581 * 135.83284 * 11 10 9 34 34 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.61100 * 187.97555 * 22 12 11 36 36 H 1.09007 * 109.61034 * 308.29943 * 22 12 11 37 37 H 1.00908 * 110.99691 * 74.61503 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2872 2.3700 -0.0005 5 6 1.9129 3.6030 -0.0011 6 6 3.2929 3.6765 0.0017 7 8 3.9051 4.8919 0.0017 8 6 3.0597 6.0441 -0.0018 9 6 4.0653 2.5090 0.0045 10 6 3.4359 1.2788 -0.0004 11 6 4.2099 -0.0154 -0.0151 12 6 5.6672 0.2510 0.3686 13 1 5.7337 0.4764 1.4329 14 6 6.5074 -0.9590 0.0505 15 1 6.0454 -1.8441 -0.3610 16 6 7.8659 -0.9358 0.2845 17 7 8.5993 -1.9915 0.0064 18 14 8.6650 0.5952 0.9967 19 1 9.0914 1.4908 -0.1086 20 1 9.8495 0.2058 1.8032 21 1 7.6893 1.3062 1.8615 22 6 6.1584 1.4530 -0.4478 23 7 5.4550 2.6514 0.0137 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2089 2.3103 -0.0014 28 1 1.3235 4.5081 -0.0041 29 1 2.4327 6.0319 -0.8934 30 1 2.4283 6.0342 0.8866 31 1 3.6733 6.9449 -0.0019 32 1 4.1714 -0.4497 -1.0141 33 1 3.7681 -0.7103 0.6990 34 1 9.5549 -1.9752 0.1715 35 1 7.2313 1.5798 -0.3028 36 1 5.9495 1.2873 -1.5048 37 1 5.7834 2.9351 0.9247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084784665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:36 Heat of formation + Delta-G solvation = -39.489286 kcal Electronic energy + Delta-G solvation = -20295.486343 eV Core-core repulsion = 17231.693236 eV Total energy + Delta-G solvation = -3063.793107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54469 -38.73661 -37.81914 -35.20263 -33.03023 -31.74072 -30.25991 -28.60898 -27.30797 -26.70026 -25.09609 -23.75639 -21.64871 -21.34268 -19.07689 -17.81448 -17.32837 -16.88054 -16.71712 -15.71155 -15.41309 -15.24713 -14.78647 -14.54039 -13.98672 -13.51992 -13.36843 -13.08777 -12.62158 -12.58154 -12.47973 -11.95872 -11.85018 -11.47570 -11.42468 -11.14055 -11.04439 -10.77304 -10.20437 -10.16074 -9.92020 -9.52374 -9.26333 -8.84669 -8.52842 -7.71284 -7.17151 -6.09781 -4.09163 1.53869 1.74587 3.25350 3.33908 3.36863 3.44800 3.57323 3.94599 4.36341 4.54668 4.89635 5.07394 5.16031 5.18522 5.19254 5.19870 5.22204 5.44028 5.49231 5.53975 5.69410 5.82740 5.94578 6.02594 6.19740 6.40328 6.44802 6.53181 6.63794 6.71172 6.96263 7.10671 7.28165 7.47502 7.50431 7.69603 7.81343 7.97192 8.49960 8.94482 9.51230 11.03208 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.007416 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.467501 B = 3774.466779 C = 5111.726462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.310 6.310 3 C 0.107 3.893 4 C -0.197 4.197 5 C -0.171 4.171 6 C 0.080 3.920 7 O -0.303 6.303 8 C 0.029 3.971 9 C 0.133 3.867 10 C -0.107 4.107 11 C -0.051 4.051 12 C -0.017 4.017 13 H 0.030 0.970 14 C -0.510 4.510 15 H 0.077 0.923 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.884 3.116 19 H -0.274 1.274 20 H -0.295 1.295 21 H -0.268 1.268 22 C 0.050 3.950 23 N -0.632 5.632 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.264 0.736 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.353 12.141 0.892 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.061 3.939 4 C -0.217 4.217 5 C -0.190 4.190 6 C 0.033 3.967 7 O -0.216 6.216 8 C -0.067 4.067 9 C 0.034 3.966 10 C -0.111 4.111 11 C -0.088 4.088 12 C -0.037 4.037 13 H 0.048 0.952 14 C -0.548 4.548 15 H 0.095 0.905 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.714 3.286 19 H -0.201 1.201 20 H -0.222 1.222 21 H -0.193 1.193 22 C -0.078 4.078 23 N -0.260 5.260 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.772 12.218 0.306 19.173 hybrid contribution -0.153 0.577 0.976 1.144 sum -14.925 12.796 1.282 19.701 Atomic orbital electron populations 1.22970 0.79371 1.03459 1.00771 1.86128 1.20378 1.26806 1.89055 1.18696 0.91436 0.83990 0.99764 1.20752 0.99287 0.91678 1.09989 1.20655 0.92742 0.98039 1.07596 1.18793 0.90313 0.84694 1.02901 1.86191 1.34506 1.11639 1.89293 1.22958 0.95748 0.87380 1.00616 1.17593 0.89264 0.88756 1.01027 1.19552 0.90779 0.96056 1.04762 1.20359 0.94925 0.91300 1.02255 1.19816 0.92817 0.95538 0.95526 0.95241 1.20924 0.92013 0.98899 1.42970 0.90492 1.25030 0.97310 0.96011 0.94860 1.69887 1.06417 1.29027 1.48218 0.86922 0.78891 0.83470 0.79335 1.20131 1.22221 1.19307 1.22736 0.97084 0.87162 1.00778 1.57169 1.01125 1.36594 1.31132 0.88599 0.93140 0.93119 0.85799 0.85658 0.93246 0.93352 0.88772 0.90689 0.90840 0.92560 0.91301 0.90446 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.80 101.05 0.99 1.31 16 2 O -0.31 -4.95 9.61 -19.67 -0.19 -5.14 16 3 C 0.11 1.81 6.65 -39.16 -0.26 1.55 16 4 C -0.20 -2.82 9.02 -39.48 -0.36 -3.18 16 5 C -0.17 -2.42 9.01 -39.58 -0.36 -2.78 16 6 C 0.08 1.33 6.71 -38.94 -0.26 1.07 16 7 O -0.30 -4.73 10.12 -20.01 -0.20 -4.93 16 8 C 0.03 0.30 9.81 101.05 0.99 1.29 16 9 C 0.13 2.56 6.13 -83.64 -0.51 2.05 16 10 C -0.11 -2.09 5.75 -104.26 -0.60 -2.69 16 11 C -0.05 -1.10 4.66 -27.82 -0.13 -1.23 16 12 C -0.02 -0.40 1.88 -91.55 -0.17 -0.57 16 13 H 0.03 0.72 7.26 -51.93 -0.38 0.35 16 14 C -0.51 -14.23 9.13 -34.44 -0.31 -14.55 16 15 H 0.08 2.32 8.00 -52.49 -0.42 1.90 16 16 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 17 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 18 Si 0.88 21.67 24.44 -169.99 -4.15 17.52 16 19 H -0.27 -6.58 6.81 56.52 0.38 -6.19 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.27 -6.25 6.55 56.52 0.37 -5.88 16 22 C 0.05 1.11 5.38 -3.89 -0.02 1.09 16 23 N -0.63 -12.74 6.14 -58.38 -0.36 -13.10 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.12 1.39 6.26 -52.49 -0.33 1.06 16 28 H 0.13 1.38 6.25 -52.49 -0.33 1.06 16 29 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 30 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.65 8.08 -51.93 -0.42 1.23 16 33 H 0.07 1.57 7.87 -51.93 -0.41 1.16 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 35 H 0.07 1.61 3.28 -51.93 -0.17 1.44 16 36 H 0.08 1.75 8.11 -51.93 -0.42 1.33 16 37 H 0.35 6.75 8.84 -39.29 -0.35 6.40 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -31.66 293.26 -5.65 -37.31 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.84 Total: 5.17 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.10 Total: -14.74 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.41 Total: -39.60 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.39 Total: -10.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.15 Total: 17.52 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.66 -5.65 -37.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.184 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds