Wall clock time and date at job start Mon Mar 30 2020 07:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35977 * 116.99737 * 2 1 4 4 C 1.38489 * 119.76878 * 359.97438 * 3 2 1 5 5 C 1.38270 * 119.86249 * 180.02562 * 4 3 2 6 6 C 1.38199 * 119.95097 * 359.86568 * 5 4 3 7 7 O 1.36085 * 119.78072 * 180.02562 * 6 5 4 8 8 C 1.42908 * 116.99830 * 359.97438 * 7 6 5 9 9 C 1.39985 * 120.44163 * 0.03195 * 6 5 4 10 10 C 1.38186 * 119.41647 * 0.22208 * 9 6 5 11 11 C 1.50801 * 122.02737 * 179.22363 * 10 9 6 12 12 C 1.53033 * 109.68634 * 15.76791 * 11 10 9 13 13 H 1.08997 * 109.81371 * 72.26076 * 12 11 10 14 14 C 1.50708 * 109.76927 * 193.01960 * 12 11 10 15 15 H 1.07991 * 119.99789 * 358.48788 * 14 12 11 16 16 C 1.37877 * 120.00008 * 178.48098 * 14 12 11 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.53380 * 107.93621 * 312.63042 * 12 11 10 23 23 N 1.39701 * 117.64040 * 180.30021 * 9 6 5 24 24 H 1.09005 * 109.46803 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47295 * 299.99363 * 1 2 3 26 26 H 1.08994 * 109.47505 * 60.00002 * 1 2 3 27 27 H 1.07997 * 120.06764 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.02661 * 179.84191 * 5 4 3 29 29 H 1.09004 * 109.47046 * 299.99928 * 8 7 6 30 30 H 1.08998 * 109.46977 * 60.00046 * 8 7 6 31 31 H 1.08994 * 109.46779 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.44056 * 255.69798 * 11 10 9 33 33 H 1.08996 * 109.43581 * 135.83284 * 11 10 9 34 34 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.61100 * 187.97555 * 22 12 11 36 36 H 1.09007 * 109.61034 * 308.29943 * 22 12 11 37 37 H 1.00908 * 110.99691 * 74.61503 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2872 2.3700 -0.0005 5 6 1.9129 3.6030 -0.0011 6 6 3.2929 3.6765 0.0017 7 8 3.9051 4.8919 0.0017 8 6 3.0597 6.0441 -0.0018 9 6 4.0653 2.5090 0.0045 10 6 3.4359 1.2788 -0.0004 11 6 4.2099 -0.0154 -0.0151 12 6 5.6672 0.2510 0.3686 13 1 5.7337 0.4764 1.4329 14 6 6.5074 -0.9590 0.0505 15 1 6.0454 -1.8441 -0.3610 16 6 7.8659 -0.9358 0.2845 17 7 8.5993 -1.9915 0.0064 18 14 8.6650 0.5952 0.9967 19 1 9.0914 1.4908 -0.1086 20 1 9.8495 0.2058 1.8032 21 1 7.6893 1.3062 1.8615 22 6 6.1584 1.4530 -0.4478 23 7 5.4550 2.6514 0.0137 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2089 2.3103 -0.0014 28 1 1.3235 4.5081 -0.0041 29 1 2.4327 6.0319 -0.8934 30 1 2.4283 6.0342 0.8866 31 1 3.6733 6.9449 -0.0019 32 1 4.1714 -0.4497 -1.0141 33 1 3.7681 -0.7103 0.6990 34 1 9.5549 -1.9752 0.1715 35 1 7.2313 1.5798 -0.3028 36 1 5.9495 1.2873 -1.5048 37 1 5.7834 2.9351 0.9247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084784665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:36 Heat of formation + Delta-G solvation = -62.721288 kcal Electronic energy + Delta-G solvation = -20296.493758 eV Core-core repulsion = 17231.693236 eV Total energy + Delta-G solvation = -3064.800522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.82372 -39.83976 -39.24972 -36.53101 -34.93514 -33.46574 -31.80436 -29.83965 -28.29316 -27.64579 -26.89003 -25.42694 -23.22814 -22.56913 -20.73384 -19.12475 -19.02842 -18.27910 -18.03526 -16.91995 -16.67425 -16.48923 -16.33166 -15.72074 -15.50480 -15.05025 -14.99665 -14.53098 -14.27326 -14.01655 -13.56317 -13.42254 -13.20496 -12.99050 -12.62858 -12.47366 -12.34812 -12.21526 -11.97720 -11.77777 -11.46651 -11.21560 -11.10955 -10.81873 -10.32325 -9.14666 -8.43454 -8.33294 -6.37943 0.26734 0.51371 1.29116 1.32933 1.42621 2.27955 2.41447 2.53313 2.70506 2.99729 3.10181 3.80318 3.91365 4.09849 4.21382 4.27195 4.41674 4.44077 4.46242 4.46876 4.50268 4.51952 4.61746 4.75490 4.79041 4.80935 4.83204 5.02146 5.25449 5.31436 5.34660 5.46330 5.55899 5.61610 6.01959 6.23544 6.27614 6.50428 6.67556 6.72585 7.26095 8.83277 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.007416 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.467501 B = 3774.466779 C = 5111.726462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.098 3.902 4 C -0.181 4.181 5 C -0.156 4.156 6 C 0.077 3.923 7 O -0.326 6.326 8 C 0.018 3.982 9 C 0.102 3.898 10 C -0.136 4.136 11 C -0.040 4.040 12 C -0.013 4.013 13 H 0.025 0.975 14 C -0.518 4.518 15 H 0.035 0.965 16 C 0.015 3.985 17 N -0.944 5.944 18 Si 0.947 3.053 19 H -0.262 1.262 20 H -0.293 1.293 21 H -0.249 1.249 22 C 0.062 3.938 23 N -0.628 5.628 24 H 0.111 0.889 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.166 0.834 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.268 0.732 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 15.578 1.501 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.052 3.948 4 C -0.200 4.200 5 C -0.175 4.175 6 C 0.030 3.970 7 O -0.240 6.240 8 C -0.077 4.077 9 C 0.003 3.997 10 C -0.140 4.140 11 C -0.077 4.077 12 C -0.033 4.033 13 H 0.043 0.957 14 C -0.557 4.557 15 H 0.054 0.946 16 C -0.182 4.182 17 N -0.584 5.584 18 Si 0.773 3.227 19 H -0.188 1.188 20 H -0.220 1.220 21 H -0.173 1.173 22 C -0.066 4.066 23 N -0.255 5.255 24 H 0.130 0.870 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.181 0.819 28 H 0.184 0.816 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.347 15.674 0.913 23.397 hybrid contribution 0.429 -0.520 0.756 1.013 sum -16.918 15.154 1.668 22.774 Atomic orbital electron populations 1.23332 0.76554 1.05268 1.02401 1.86098 1.23372 1.26841 1.88995 1.18775 0.90769 0.85420 0.99848 1.21176 1.01041 0.90504 1.07311 1.21117 0.91895 0.99555 1.04924 1.18814 0.91063 0.84540 1.02557 1.86160 1.36436 1.12247 1.89133 1.23318 0.96245 0.85984 1.02116 1.17768 0.88751 0.89935 1.03214 1.19383 0.92157 0.94788 1.07690 1.20066 0.93926 0.93018 1.00714 1.19708 0.93738 0.94505 0.95385 0.95687 1.21158 0.92811 0.99253 1.42428 0.94641 1.25876 0.97819 0.99343 0.95202 1.70031 1.06924 1.31521 1.49949 0.85879 0.78031 0.79612 0.79146 1.18757 1.22041 1.17262 1.22381 0.96809 0.87552 0.99831 1.57169 1.02063 1.34744 1.31565 0.87030 0.91312 0.91404 0.81939 0.81618 0.91799 0.91540 0.86949 0.92663 0.91910 0.92312 0.92014 0.91533 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.80 113.37 1.11 1.45 16 2 O -0.34 -10.44 9.61 -93.29 -0.90 -11.34 16 3 C 0.10 3.16 6.65 22.55 0.15 3.31 16 4 C -0.18 -4.41 9.02 22.34 0.20 -4.21 16 5 C -0.16 -3.70 9.01 22.27 0.20 -3.50 16 6 C 0.08 2.37 6.71 22.68 0.15 2.52 16 7 O -0.33 -9.18 10.12 -94.52 -0.96 -10.13 16 8 C 0.02 0.29 9.81 113.37 1.11 1.40 16 9 C 0.10 3.84 6.13 38.30 0.23 4.07 16 10 C -0.14 -5.31 5.75 -19.63 -0.11 -5.42 16 11 C -0.04 -1.80 4.66 29.89 0.14 -1.66 16 12 C -0.01 -0.65 1.88 -11.40 -0.02 -0.67 16 13 H 0.03 1.25 7.26 -2.39 -0.02 1.23 16 14 C -0.52 -30.52 9.13 25.60 0.23 -30.29 16 15 H 0.04 2.31 8.00 -2.92 -0.02 2.28 16 16 C 0.02 0.90 5.45 84.65 0.46 1.36 16 17 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 18 Si 0.95 45.35 24.44 68.60 1.68 47.03 16 19 H -0.26 -11.95 6.81 99.48 0.68 -11.28 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 21 H -0.25 -11.04 6.55 99.48 0.65 -10.38 16 22 C 0.06 2.84 5.38 86.52 0.47 3.30 16 23 N -0.63 -24.96 6.14 -338.60 -2.08 -27.03 16 24 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 26 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 27 H 0.16 2.67 6.26 -2.91 -0.02 2.65 16 28 H 0.17 2.57 6.25 -2.91 -0.02 2.56 16 29 H 0.06 0.86 7.65 -2.39 -0.02 0.84 16 30 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 2.61 8.08 -2.39 -0.02 2.59 16 33 H 0.06 2.85 7.87 -2.39 -0.02 2.83 16 34 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.06 2.86 3.28 -2.39 -0.01 2.86 16 36 H 0.07 3.12 8.11 -2.38 -0.02 3.10 16 37 H 0.35 13.27 8.84 -89.69 -0.79 12.47 16 Total: -1.00 -72.42 293.26 2.59 -69.83 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.22 Total: 19.41 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.33 Total: -28.33 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.78 Total: -86.47 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.85 Total: -21.47 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.68 Total: 47.03 kcal Total: -72.42 2.59 -69.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.111 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds