Wall clock time and date at job start Mon Mar 30 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 117.00047 * 2 1 4 4 C 1.38469 * 120.09194 * 180.02562 * 3 2 1 5 5 C 1.38741 * 120.54313 * 180.02562 * 4 3 2 6 6 C 1.38172 * 119.92816 * 0.21451 * 5 4 3 7 7 C 1.39959 * 119.48097 * 359.65350 * 6 5 4 8 8 O 1.36010 * 119.80104 * 180.21976 * 7 6 5 9 9 C 1.42895 * 117.00279 * 180.02562 * 8 7 6 10 10 C 1.38219 * 120.41052 * 0.24632 * 7 6 5 11 11 N 1.40000 * 122.91599 * 179.23262 * 6 5 4 12 12 C 1.46538 * 113.09471 * 20.22295 * 11 6 5 13 13 C 1.53381 * 108.56880 * 306.68963 * 12 11 6 14 14 H 1.09002 * 109.76492 * 308.59854 * 13 12 11 15 15 C 1.50702 * 109.75992 * 187.88470 * 13 12 11 16 16 H 1.08003 * 119.99782 * 240.71563 * 15 13 12 17 17 C 1.37872 * 120.00020 * 60.72093 * 15 13 12 18 18 N 1.31514 * 120.00137 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99902 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47542 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47209 * 119.99857 * 19 17 15 22 22 H 1.48505 * 109.47456 * 239.99764 * 19 17 15 23 23 C 1.50820 * 118.05524 * 180.27891 * 5 4 3 24 24 H 1.08995 * 109.46779 * 300.00167 * 1 2 3 25 25 H 1.09005 * 109.46685 * 59.99626 * 1 2 3 26 26 H 1.08995 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.72671 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.46889 * 299.99922 * 9 8 7 29 29 H 1.08999 * 109.47304 * 60.00195 * 9 8 7 30 30 H 1.09000 * 109.47062 * 180.02562 * 9 8 7 31 31 H 1.07992 * 120.09424 * 180.02562 * 10 7 6 32 32 H 1.00901 * 111.00137 * 254.73319 * 11 6 5 33 33 H 1.09002 * 109.68889 * 186.93796 * 12 11 6 34 34 H 1.08994 * 109.58770 * 66.38723 * 12 11 6 35 35 H 0.96997 * 120.00231 * 180.02562 * 18 17 15 36 36 H 1.08996 * 109.42675 * 75.59203 * 23 5 4 37 37 H 1.09004 * 109.42737 * 315.74971 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4291 1.2864 -0.0005 5 6 4.0687 2.5176 0.0000 6 6 3.3239 3.6813 0.0055 7 6 1.9264 3.6047 0.0032 8 8 1.1868 4.7462 0.0041 9 6 -0.2345 4.5984 0.0022 10 6 1.2930 2.3762 0.0006 11 7 3.9036 4.9556 0.0221 12 6 5.2964 4.9593 -0.4333 13 6 6.0803 3.9246 0.3837 14 1 5.9130 4.0917 1.4477 15 6 7.5508 4.0396 0.0749 16 1 8.0812 3.1990 -0.3476 17 6 8.2191 5.2178 0.3319 18 7 7.5731 6.2416 0.8459 19 14 10.0420 5.3601 -0.0502 20 1 10.5306 4.0777 -0.6174 21 1 10.2579 6.4512 -1.0341 22 1 10.7872 5.6645 1.1978 23 6 5.5768 2.5335 -0.0071 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0144 0.3788 -0.0014 28 1 -0.5416 4.0511 -0.8891 29 1 -0.5438 4.0484 0.8910 30 1 -0.7021 5.5830 0.0028 31 1 0.2144 2.3230 -0.0016 32 1 3.8208 5.3787 0.9344 33 1 5.7293 5.9483 -0.2829 34 1 5.3359 4.6969 -1.4905 35 1 8.0432 7.0707 1.0264 36 1 5.9373 2.2844 -1.0051 37 1 5.9505 1.7989 0.7063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084784681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:26 Heat of formation + Delta-G solvation = -50.888263 kcal Electronic energy + Delta-G solvation = -20018.755852 eV Core-core repulsion = 16954.468449 eV Total energy + Delta-G solvation = -3064.287403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39688 -38.59962 -37.87020 -34.88648 -32.97911 -31.62341 -29.25713 -28.97178 -27.70883 -26.16081 -24.98064 -23.34827 -21.71925 -21.37923 -19.11382 -17.80373 -16.79896 -16.45764 -16.23789 -15.72305 -15.62814 -15.28848 -14.55921 -14.49358 -13.80280 -13.37620 -13.28986 -13.22853 -12.51866 -12.36511 -12.12964 -11.72981 -11.48722 -11.43337 -11.11743 -11.08390 -10.95473 -10.75050 -10.45318 -10.13967 -9.76994 -9.47155 -9.24701 -8.51901 -8.24308 -7.98897 -6.80943 -6.06257 -4.11379 1.71256 1.88375 3.28085 3.36570 3.39993 3.42700 3.55085 4.09401 4.39765 4.85865 4.99274 5.08730 5.09841 5.20399 5.20680 5.26413 5.37713 5.40863 5.51572 5.65301 5.87007 5.89501 6.17991 6.33550 6.43834 6.56764 6.72662 6.83496 6.95991 7.06727 7.22789 7.43594 7.50469 7.67666 7.81857 7.91706 8.04998 8.36594 8.42147 8.91223 9.53222 11.00570 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.005240 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.566632 B = 5342.570999 C = 6176.635712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.173 4.173 5 C -0.042 4.042 6 C 0.070 3.930 7 C 0.145 3.855 8 O -0.297 6.297 9 C 0.028 3.972 10 C -0.292 4.292 11 N -0.634 5.634 12 C 0.060 3.940 13 C 0.018 3.982 14 H 0.030 0.970 15 C -0.511 4.511 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.894 3.106 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.074 4.074 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.348 0.652 33 H 0.112 0.888 34 H 0.049 0.951 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.873 -6.844 -0.876 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.085 3.915 4 C -0.192 4.192 5 C -0.045 4.045 6 C -0.029 4.029 7 C 0.097 3.903 8 O -0.209 6.209 9 C -0.068 4.068 10 C -0.311 4.311 11 N -0.262 5.262 12 C -0.067 4.067 13 C -0.002 4.002 14 H 0.048 0.952 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.111 4.111 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.174 0.826 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.914 -6.400 -1.408 16.290 hybrid contribution 0.748 -0.306 0.485 0.943 sum -14.165 -6.706 -0.924 15.700 Atomic orbital electron populations 1.22940 0.79342 1.03261 1.00937 1.86063 1.20607 1.27261 1.89393 1.18481 0.91915 0.83152 0.97983 1.20186 0.90779 0.98052 1.10224 1.20026 0.97390 0.90605 0.96529 1.17957 0.88788 0.90485 1.05674 1.18706 0.89976 0.84369 0.97245 1.86220 1.17626 1.28630 1.88455 1.22977 0.80034 1.03248 1.00548 1.20923 0.99654 0.91885 1.18688 1.57353 1.21951 1.15840 1.31034 1.22397 0.82231 1.04515 0.97554 1.19319 0.95455 0.89337 0.96088 0.95232 1.21126 0.93259 0.98573 1.42057 0.92328 1.24977 0.98326 0.95823 0.94818 1.69850 1.35932 1.03288 1.43847 0.86503 0.85223 0.78105 0.77987 1.19763 1.20956 1.21056 1.20779 0.87292 1.01427 1.01584 0.93116 0.93118 0.88700 0.85669 0.93304 0.93367 0.88594 0.85464 0.82635 0.87039 0.93267 0.92843 0.90973 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.65 10.50 -19.72 -0.21 -4.86 16 3 C 0.13 2.14 6.68 -39.33 -0.26 1.88 16 4 C -0.17 -3.09 9.57 -39.31 -0.38 -3.47 16 5 C -0.04 -0.84 5.74 -104.40 -0.60 -1.44 16 6 C 0.07 1.43 6.14 -83.51 -0.51 0.92 16 7 C 0.14 2.60 6.70 -38.94 -0.26 2.34 16 8 O -0.30 -4.95 10.11 -19.77 -0.20 -5.15 16 9 C 0.03 0.31 9.81 101.05 0.99 1.30 16 10 C -0.29 -4.56 8.01 -39.42 -0.32 -4.88 16 11 N -0.63 -13.66 6.15 -58.23 -0.36 -14.01 16 12 C 0.06 1.44 5.78 -3.82 -0.02 1.42 16 13 C 0.02 0.44 2.30 -91.57 -0.21 0.23 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.51 -13.65 8.54 -34.44 -0.29 -13.94 16 16 H 0.06 1.54 7.75 -52.48 -0.41 1.14 16 17 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 18 N -0.89 -24.64 11.37 55.43 0.63 -24.01 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.07 -1.57 5.09 -27.82 -0.14 -1.71 16 24 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 25 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.05 0.49 7.65 -51.92 -0.40 0.09 16 29 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.13 1.59 4.51 -52.49 -0.24 1.35 16 32 H 0.35 7.36 8.84 -39.29 -0.35 7.01 16 33 H 0.11 2.92 6.02 -51.93 -0.31 2.61 16 34 H 0.05 1.19 8.11 -51.93 -0.42 0.77 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 301.33 15.07 4.54 4.54 Total: -1.00 -29.30 301.33 -6.71 -36.01 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.98 Total: 6.15 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.11 Total: -14.50 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.27 Total: -38.02 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.41 Total: -10.00 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.30 -6.71 -36.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.880 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds