Wall clock time and date at job start Mon Mar 30 2020 07:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 117.00047 * 2 1 4 4 C 1.38469 * 120.09194 * 180.02562 * 3 2 1 5 5 C 1.38741 * 120.54313 * 180.02562 * 4 3 2 6 6 C 1.38172 * 119.92816 * 0.21451 * 5 4 3 7 7 C 1.39959 * 119.48097 * 359.65350 * 6 5 4 8 8 O 1.36010 * 119.80104 * 180.21976 * 7 6 5 9 9 C 1.42895 * 117.00279 * 180.02562 * 8 7 6 10 10 C 1.38219 * 120.41052 * 0.24632 * 7 6 5 11 11 N 1.40000 * 122.91599 * 179.23262 * 6 5 4 12 12 C 1.46538 * 113.09471 * 20.22295 * 11 6 5 13 13 C 1.53381 * 108.56880 * 306.68963 * 12 11 6 14 14 H 1.09002 * 109.76492 * 308.59854 * 13 12 11 15 15 C 1.50702 * 109.75992 * 187.88470 * 13 12 11 16 16 H 1.08003 * 119.99782 * 240.71563 * 15 13 12 17 17 C 1.37872 * 120.00020 * 60.72093 * 15 13 12 18 18 N 1.31514 * 120.00137 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99902 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47542 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47209 * 119.99857 * 19 17 15 22 22 H 1.48505 * 109.47456 * 239.99764 * 19 17 15 23 23 C 1.50820 * 118.05524 * 180.27891 * 5 4 3 24 24 H 1.08995 * 109.46779 * 300.00167 * 1 2 3 25 25 H 1.09005 * 109.46685 * 59.99626 * 1 2 3 26 26 H 1.08995 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.72671 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.46889 * 299.99922 * 9 8 7 29 29 H 1.08999 * 109.47304 * 60.00195 * 9 8 7 30 30 H 1.09000 * 109.47062 * 180.02562 * 9 8 7 31 31 H 1.07992 * 120.09424 * 180.02562 * 10 7 6 32 32 H 1.00901 * 111.00137 * 254.73319 * 11 6 5 33 33 H 1.09002 * 109.68889 * 186.93796 * 12 11 6 34 34 H 1.08994 * 109.58770 * 66.38723 * 12 11 6 35 35 H 0.96997 * 120.00231 * 180.02562 * 18 17 15 36 36 H 1.08996 * 109.42675 * 75.59203 * 23 5 4 37 37 H 1.09004 * 109.42737 * 315.74971 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4291 1.2864 -0.0005 5 6 4.0687 2.5176 0.0000 6 6 3.3239 3.6813 0.0055 7 6 1.9264 3.6047 0.0032 8 8 1.1868 4.7462 0.0041 9 6 -0.2345 4.5984 0.0022 10 6 1.2930 2.3762 0.0006 11 7 3.9036 4.9556 0.0221 12 6 5.2964 4.9593 -0.4333 13 6 6.0803 3.9246 0.3837 14 1 5.9130 4.0917 1.4477 15 6 7.5508 4.0396 0.0749 16 1 8.0812 3.1990 -0.3476 17 6 8.2191 5.2178 0.3319 18 7 7.5731 6.2416 0.8459 19 14 10.0420 5.3601 -0.0502 20 1 10.5306 4.0777 -0.6174 21 1 10.2579 6.4512 -1.0341 22 1 10.7872 5.6645 1.1978 23 6 5.5768 2.5335 -0.0071 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0144 0.3788 -0.0014 28 1 -0.5416 4.0511 -0.8891 29 1 -0.5438 4.0484 0.8910 30 1 -0.7021 5.5830 0.0028 31 1 0.2144 2.3230 -0.0016 32 1 3.8208 5.3787 0.9344 33 1 5.7293 5.9483 -0.2829 34 1 5.3359 4.6969 -1.4905 35 1 8.0432 7.0707 1.0264 36 1 5.9373 2.2844 -1.0051 37 1 5.9505 1.7989 0.7063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084784681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:25 Heat of formation + Delta-G solvation = -70.031950 kcal Electronic energy + Delta-G solvation = -20019.585985 eV Core-core repulsion = 16954.468449 eV Total energy + Delta-G solvation = -3065.117536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.73265 -39.78608 -39.31683 -36.41392 -34.79612 -33.32125 -30.84812 -30.22895 -28.71931 -27.22406 -26.82724 -25.05584 -23.16588 -22.89321 -20.67510 -19.15578 -18.40879 -18.07258 -17.68694 -17.01774 -16.80524 -16.40512 -16.30436 -15.57123 -15.43139 -14.88002 -14.83058 -14.68662 -14.11271 -13.85797 -13.37288 -13.20551 -12.90680 -12.83665 -12.54262 -12.39511 -12.33141 -12.30410 -12.05427 -12.04771 -11.44259 -11.14028 -11.10297 -10.50943 -9.91272 -9.38129 -8.31708 -8.11832 -6.24395 0.33519 0.50600 1.42645 1.45030 1.56147 2.34816 2.42856 2.45189 2.70826 3.15508 3.36770 3.83644 4.04713 4.20508 4.33110 4.36479 4.40800 4.42208 4.43056 4.48579 4.49628 4.60993 4.72967 4.75282 4.92588 4.98520 5.05099 5.20327 5.27210 5.49371 5.59206 5.62638 5.79884 5.87751 6.13844 6.29462 6.43307 6.48757 6.80009 6.84889 7.43160 8.94033 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.005240 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.566632 B = 5342.570999 C = 6176.635712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.142 3.858 4 C -0.186 4.186 5 C -0.056 4.056 6 C 0.030 3.970 7 C 0.148 3.852 8 O -0.320 6.320 9 C 0.016 3.984 10 C -0.281 4.281 11 N -0.631 5.631 12 C 0.077 3.923 13 C 0.019 3.981 14 H -0.002 1.002 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.065 4.065 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.122 0.878 27 H 0.135 0.865 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.165 0.835 32 H 0.343 0.657 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.910 -8.203 -1.214 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.096 3.904 4 C -0.205 4.205 5 C -0.059 4.059 6 C -0.068 4.068 7 C 0.101 3.899 8 O -0.233 6.233 9 C -0.079 4.079 10 C -0.300 4.300 11 N -0.258 5.258 12 C -0.051 4.051 13 C -0.001 4.001 14 H 0.016 0.984 15 C -0.571 4.571 16 H 0.075 0.925 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.102 4.102 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.153 0.847 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.182 0.818 32 H 0.168 0.832 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.987 -7.785 -1.752 18.768 hybrid contribution 1.165 0.039 0.614 1.317 sum -15.823 -7.746 -1.138 17.653 Atomic orbital electron populations 1.23364 0.76515 1.05692 1.02176 1.86070 1.23469 1.26019 1.88793 1.18519 0.91579 0.84295 0.95976 1.20231 0.92030 0.97418 1.10836 1.19890 0.96379 0.91668 0.97965 1.18162 0.90355 0.89704 1.08626 1.18706 0.89246 0.85700 0.96293 1.86195 1.20475 1.28505 1.88146 1.23371 0.77025 1.05365 1.02107 1.21206 1.01421 0.90464 1.16955 1.57328 1.20170 1.17392 1.30950 1.22000 0.83755 1.02611 0.96760 1.19213 0.94983 0.91700 0.94205 0.98394 1.21453 0.94539 0.98768 1.42293 0.92455 1.25735 1.02466 0.95484 0.94626 1.69981 1.37440 1.03634 1.44407 0.85502 0.80162 0.78185 0.77776 1.19131 1.20566 1.20723 1.20585 0.88906 0.99307 1.01429 0.91783 0.91804 0.85946 0.84745 0.91720 0.91581 0.86479 0.81785 0.83216 0.89745 0.94263 0.92795 0.91188 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.82 113.37 1.11 1.36 16 2 O -0.33 -8.49 10.50 -93.49 -0.98 -9.47 16 3 C 0.14 4.35 6.68 22.43 0.15 4.50 16 4 C -0.19 -6.49 9.57 22.45 0.21 -6.27 16 5 C -0.06 -2.26 5.74 -19.72 -0.11 -2.37 16 6 C 0.03 1.23 6.14 38.24 0.23 1.47 16 7 C 0.15 5.14 6.70 22.68 0.15 5.30 16 8 O -0.32 -10.16 10.11 -93.66 -0.95 -11.11 16 9 C 0.02 0.29 9.81 113.37 1.11 1.41 16 10 C -0.28 -7.95 8.01 22.37 0.18 -7.78 16 11 N -0.63 -28.29 6.15 -338.14 -2.08 -30.37 16 12 C 0.08 3.88 5.78 86.50 0.50 4.38 16 13 C 0.02 0.97 2.30 -11.41 -0.03 0.94 16 14 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 15 C -0.53 -29.29 8.54 25.60 0.22 -29.08 16 16 H 0.06 3.09 7.75 -2.91 -0.02 3.07 16 17 C 0.02 0.88 5.29 84.65 0.45 1.32 16 18 N -0.92 -52.29 11.37 21.45 0.24 -52.04 16 19 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.07 -2.86 5.09 29.89 0.15 -2.71 16 24 H 0.06 0.82 7.67 -2.39 -0.02 0.80 16 25 H 0.06 0.82 7.67 -2.38 -0.02 0.80 16 26 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 28 H 0.06 1.03 7.65 -2.38 -0.02 1.01 16 29 H 0.07 1.02 7.65 -2.39 -0.02 1.00 16 30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.16 3.31 4.51 -2.91 -0.01 3.30 16 32 H 0.34 15.32 8.84 -89.69 -0.79 14.52 16 33 H 0.08 4.68 6.02 -2.39 -0.01 4.66 16 34 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.07 3.04 8.08 -2.39 -0.02 3.02 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -64.95 301.33 2.89 -62.06 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.29 Total: 23.06 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.33 Total: -27.53 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -1.84 Total: -82.41 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.93 Total: -20.58 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.95 2.89 -62.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.969 kcal (2) G-P(sol) polarization free energy of solvation -64.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds