Wall clock time and date at job start Mon Mar 30 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99598 * 2 1 4 4 C 1.38597 * 120.07153 * 180.02562 * 3 2 1 5 5 C 1.38994 * 120.10949 * 180.02562 * 4 3 2 6 6 C 1.38611 * 120.11410 * 359.86595 * 5 4 3 7 7 C 1.38996 * 119.61508 * 0.18134 * 6 5 4 8 8 O 1.35891 * 119.86855 * 179.85239 * 7 6 5 9 9 C 1.42897 * 117.00321 * 180.02562 * 8 7 6 10 10 C 1.38577 * 120.26635 * 359.61622 * 7 6 5 11 11 C 1.50604 * 121.49707 * 180.29952 * 6 5 4 12 12 C 1.52843 * 110.50582 * 339.35666 * 11 6 5 13 13 H 1.09000 * 109.57551 * 291.49200 * 12 11 6 14 14 C 1.50705 * 109.57580 * 171.24147 * 12 11 6 15 15 H 1.08001 * 119.99352 * 0.02562 * 14 12 11 16 16 C 1.37870 * 120.00102 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00168 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99945 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47016 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46960 * 119.99964 * 18 16 14 21 21 H 1.48503 * 109.47556 * 240.00063 * 18 16 14 22 22 C 1.53425 * 108.85077 * 51.30628 * 12 11 6 23 23 N 1.39924 * 119.05814 * 179.64305 * 5 4 3 24 24 H 1.08999 * 109.47144 * 300.00207 * 1 2 3 25 25 H 1.08998 * 109.47043 * 59.99806 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.07993 * 119.94235 * 359.97438 * 4 3 2 28 28 H 1.08999 * 109.47310 * 59.99369 * 9 8 7 29 29 H 1.08996 * 109.46975 * 179.97438 * 9 8 7 30 30 H 1.08995 * 109.46713 * 299.99457 * 9 8 7 31 31 H 1.08001 * 119.97851 * 180.26682 * 10 7 6 32 32 H 1.08999 * 109.27233 * 99.62552 * 11 6 5 33 33 H 1.08999 * 109.26454 * 219.09654 * 11 6 5 34 34 H 0.97007 * 120.00106 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.79865 * 56.37159 * 22 12 11 36 36 H 1.08994 * 109.80096 * 177.17330 * 22 12 11 37 37 H 0.97002 * 120.54206 * 346.59906 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4299 1.2852 -0.0005 5 6 4.0616 2.5233 0.0000 6 6 3.3097 3.6877 -0.0017 7 6 1.9219 3.6093 -0.0002 8 8 1.1797 4.7476 0.0012 9 6 -0.2411 4.5957 0.0033 10 6 1.2922 2.3749 -0.0049 11 6 3.9616 5.0453 -0.0079 12 6 5.4024 4.9497 0.4932 13 1 5.4042 4.7047 1.5553 14 6 6.1004 6.2679 0.2781 15 1 5.5686 7.0934 -0.1716 16 6 7.4177 6.4201 0.6552 17 7 8.0655 5.4147 1.2023 18 14 8.2831 8.0539 0.3879 19 1 7.3419 9.0155 -0.2403 20 1 8.7404 8.5913 1.6945 21 1 9.4546 7.8538 -0.5024 22 6 6.1275 3.8474 -0.2899 23 7 5.4600 2.5727 0.0071 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0183 0.3797 -0.0005 28 1 -0.5465 4.0459 0.8936 29 1 -0.7116 5.5789 0.0047 30 1 -0.5491 4.0464 -0.8864 31 1 0.2136 2.3193 -0.0081 32 1 3.9595 5.4408 -1.0236 33 1 3.3992 5.7173 0.6403 34 1 8.9922 5.5219 1.4680 35 1 6.0692 4.0544 -1.3585 36 1 7.1712 3.7997 0.0203 37 1 5.9803 1.7784 0.2051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084784696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:59 Heat of formation + Delta-G solvation = -52.610095 kcal Electronic energy + Delta-G solvation = -20016.298935 eV Core-core repulsion = 16951.936867 eV Total energy + Delta-G solvation = -3064.362068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25467 -38.55359 -37.77028 -34.74165 -32.89188 -31.68345 -29.21962 -28.93446 -27.56332 -26.46244 -24.65844 -23.64970 -21.66909 -21.51043 -18.77283 -18.26688 -16.80894 -16.36372 -15.96562 -15.69845 -15.26474 -14.97667 -14.66100 -14.56040 -14.39851 -13.63367 -13.23226 -12.70969 -12.42743 -12.31356 -12.16409 -12.04382 -11.59145 -11.35761 -11.08324 -11.02674 -10.94138 -10.77308 -10.41634 -10.17891 -9.71026 -9.21043 -9.09601 -8.81280 -8.37913 -7.39506 -6.71327 -6.05630 -4.10672 2.01309 2.08909 3.28415 3.36850 3.39607 3.41752 3.60701 4.31005 4.38558 4.49756 5.07457 5.15864 5.17775 5.26509 5.26864 5.32668 5.45445 5.54181 5.58745 5.70101 5.82876 6.08615 6.44827 6.53976 6.59307 6.72755 6.81404 6.91476 6.99189 7.16589 7.22486 7.50394 7.59747 7.79906 7.89215 7.96934 8.12939 8.42562 8.58334 8.94141 9.54532 11.01136 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030199 B = 0.005318 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.946451 B = 5263.730557 C = 6092.358059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.320 6.320 3 C 0.187 3.813 4 C -0.269 4.269 5 C 0.294 3.706 6 C -0.203 4.203 7 C 0.193 3.807 8 O -0.308 6.308 9 C 0.031 3.969 10 C -0.356 4.356 11 C -0.049 4.049 12 C 0.035 3.965 13 H 0.033 0.967 14 C -0.508 4.508 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.119 3.881 23 N -0.735 5.735 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.109 0.891 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -7.595 -2.483 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.142 3.858 4 C -0.292 4.292 5 C 0.185 3.815 6 C -0.209 4.209 7 C 0.146 3.854 8 O -0.221 6.221 9 C -0.065 4.065 10 C -0.377 4.377 11 C -0.087 4.087 12 C 0.016 3.984 13 H 0.051 0.949 14 C -0.547 4.547 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.004 4.004 23 N -0.360 5.360 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.126 0.874 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.137 -7.415 -2.464 15.285 hybrid contribution 0.155 0.418 0.006 0.446 sum -12.981 -6.998 -2.458 14.951 Atomic orbital electron populations 1.22938 0.79212 1.03116 1.01118 1.86021 1.20754 1.27607 1.88925 1.18185 0.91329 0.82942 0.93382 1.19622 0.91334 0.96707 1.21577 1.16983 0.84725 0.90963 0.88850 1.18838 0.89478 0.96325 1.16269 1.18325 0.90164 0.83951 0.92944 1.86111 1.18104 1.29486 1.88369 1.22953 0.79628 1.03135 1.00787 1.20737 0.99316 0.91885 1.25768 1.20209 0.97375 0.90567 1.00520 1.18964 0.89493 0.94077 0.95879 0.94882 1.21207 0.96335 0.97056 1.40083 0.92158 1.25001 0.97537 0.96728 0.94809 1.69851 1.10855 1.30627 1.41982 0.86499 0.79506 0.83979 0.77836 1.19681 1.21042 1.21023 1.22130 0.99521 0.81157 0.97581 1.45295 1.01677 1.13595 1.75409 0.93002 0.93019 0.88811 0.86016 0.93157 0.88703 0.93181 0.85986 0.92714 0.92187 0.92922 0.94587 0.87357 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.75 10.50 -19.41 -0.20 -4.96 16 3 C 0.19 3.18 6.68 -39.29 -0.26 2.92 16 4 C -0.27 -4.86 9.81 -39.17 -0.38 -5.25 16 5 C 0.29 5.92 6.47 -83.75 -0.54 5.38 16 6 C -0.20 -4.29 5.77 -104.25 -0.60 -4.89 16 7 C 0.19 3.60 6.65 -39.18 -0.26 3.34 16 8 O -0.31 -5.31 9.58 -19.40 -0.19 -5.49 16 9 C 0.03 0.35 9.81 101.05 0.99 1.34 16 10 C -0.36 -5.82 8.02 -39.30 -0.32 -6.13 16 11 C -0.05 -1.13 4.68 -28.01 -0.13 -1.26 16 12 C 0.04 0.88 2.25 -91.63 -0.21 0.68 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.51 -13.77 8.55 -34.44 -0.29 -14.06 16 15 H 0.06 1.62 7.75 -52.49 -0.41 1.22 16 16 C 0.06 1.62 5.31 -17.82 -0.09 1.53 16 17 N -0.89 -24.73 11.37 55.43 0.63 -24.10 16 18 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 C 0.12 2.76 6.21 -3.59 -0.02 2.74 16 23 N -0.73 -14.82 5.80 -58.11 -0.34 -15.16 16 24 H 0.05 0.48 7.67 -51.93 -0.40 0.09 16 25 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.51 7.64 -51.93 -0.40 0.12 16 31 H 0.12 1.62 4.50 -52.49 -0.24 1.38 16 32 H 0.05 1.25 8.11 -51.93 -0.42 0.83 16 33 H 0.06 1.38 7.73 -51.93 -0.40 0.98 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 2.71 6.11 -51.93 -0.32 2.40 16 37 H 0.39 6.89 8.86 -40.82 -0.36 6.53 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -29.76 300.73 -6.70 -36.46 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.98 Total: 5.20 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.13 Total: -12.35 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.29 Total: -39.26 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.39 Total: -10.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.76 -6.70 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.153 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds