Wall clock time and date at job start Mon Mar 30 2020 07:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99598 * 2 1 4 4 C 1.38597 * 120.07153 * 180.02562 * 3 2 1 5 5 C 1.38994 * 120.10949 * 180.02562 * 4 3 2 6 6 C 1.38611 * 120.11410 * 359.86595 * 5 4 3 7 7 C 1.38996 * 119.61508 * 0.18134 * 6 5 4 8 8 O 1.35891 * 119.86855 * 179.85239 * 7 6 5 9 9 C 1.42897 * 117.00321 * 180.02562 * 8 7 6 10 10 C 1.38577 * 120.26635 * 359.61622 * 7 6 5 11 11 C 1.50604 * 121.49707 * 180.29952 * 6 5 4 12 12 C 1.52843 * 110.50582 * 339.35666 * 11 6 5 13 13 H 1.09000 * 109.57551 * 291.49200 * 12 11 6 14 14 C 1.50705 * 109.57580 * 171.24147 * 12 11 6 15 15 H 1.08001 * 119.99352 * 0.02562 * 14 12 11 16 16 C 1.37870 * 120.00102 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00168 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99945 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47016 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46960 * 119.99964 * 18 16 14 21 21 H 1.48503 * 109.47556 * 240.00063 * 18 16 14 22 22 C 1.53425 * 108.85077 * 51.30628 * 12 11 6 23 23 N 1.39924 * 119.05814 * 179.64305 * 5 4 3 24 24 H 1.08999 * 109.47144 * 300.00207 * 1 2 3 25 25 H 1.08998 * 109.47043 * 59.99806 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.07993 * 119.94235 * 359.97438 * 4 3 2 28 28 H 1.08999 * 109.47310 * 59.99369 * 9 8 7 29 29 H 1.08996 * 109.46975 * 179.97438 * 9 8 7 30 30 H 1.08995 * 109.46713 * 299.99457 * 9 8 7 31 31 H 1.08001 * 119.97851 * 180.26682 * 10 7 6 32 32 H 1.08999 * 109.27233 * 99.62552 * 11 6 5 33 33 H 1.08999 * 109.26454 * 219.09654 * 11 6 5 34 34 H 0.97007 * 120.00106 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.79865 * 56.37159 * 22 12 11 36 36 H 1.08994 * 109.80096 * 177.17330 * 22 12 11 37 37 H 0.97002 * 120.54206 * 346.59906 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4299 1.2852 -0.0005 5 6 4.0616 2.5233 0.0000 6 6 3.3097 3.6877 -0.0017 7 6 1.9219 3.6093 -0.0002 8 8 1.1797 4.7476 0.0012 9 6 -0.2411 4.5957 0.0033 10 6 1.2922 2.3749 -0.0049 11 6 3.9616 5.0453 -0.0079 12 6 5.4024 4.9497 0.4932 13 1 5.4042 4.7047 1.5553 14 6 6.1004 6.2679 0.2781 15 1 5.5686 7.0934 -0.1716 16 6 7.4177 6.4201 0.6552 17 7 8.0655 5.4147 1.2023 18 14 8.2831 8.0539 0.3879 19 1 7.3419 9.0155 -0.2403 20 1 8.7404 8.5913 1.6945 21 1 9.4546 7.8538 -0.5024 22 6 6.1275 3.8474 -0.2899 23 7 5.4600 2.5727 0.0071 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0183 0.3797 -0.0005 28 1 -0.5465 4.0459 0.8936 29 1 -0.7116 5.5789 0.0047 30 1 -0.5491 4.0464 -0.8864 31 1 0.2136 2.3193 -0.0081 32 1 3.9595 5.4408 -1.0236 33 1 3.3992 5.7173 0.6403 34 1 8.9922 5.5219 1.4680 35 1 6.0692 4.0544 -1.3585 36 1 7.1712 3.7997 0.0203 37 1 5.9803 1.7784 0.2051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084784696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:58 Heat of formation + Delta-G solvation = -72.020067 kcal Electronic energy + Delta-G solvation = -20017.140614 eV Core-core repulsion = 16951.936867 eV Total energy + Delta-G solvation = -3065.203747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61013 -39.74847 -39.26441 -36.37279 -34.62908 -33.45376 -30.79625 -30.29612 -28.57950 -27.70629 -26.41476 -25.35782 -23.13387 -23.05965 -20.40245 -19.64305 -18.48588 -17.98929 -17.32848 -16.84513 -16.47046 -16.38120 -16.30433 -16.14435 -15.53267 -15.26187 -14.86092 -14.35038 -14.05544 -13.90139 -13.56318 -13.23901 -12.98699 -12.84361 -12.56805 -12.51338 -12.33667 -12.15293 -12.08150 -11.91540 -11.46038 -11.10020 -10.97158 -10.54957 -10.20593 -8.80095 -8.28855 -8.11687 -6.25853 0.59493 0.67785 1.42851 1.45061 1.56956 2.20546 2.44031 2.47537 2.87315 2.95187 3.19416 4.07685 4.13390 4.22835 4.28709 4.39519 4.42580 4.45097 4.51946 4.57806 4.64576 4.72066 4.75417 4.78754 4.98240 5.05079 5.11063 5.29758 5.37838 5.45623 5.56941 5.63605 5.85022 5.91535 6.22011 6.33693 6.51822 6.67983 6.83672 7.06407 7.42583 8.93331 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030199 B = 0.005318 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.946451 B = 5263.730557 C = 6092.358059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.195 3.805 4 C -0.275 4.275 5 C 0.278 3.722 6 C -0.244 4.244 7 C 0.194 3.806 8 O -0.332 6.332 9 C 0.018 3.982 10 C -0.344 4.344 11 C -0.035 4.035 12 C 0.036 3.964 13 H -0.005 1.005 14 C -0.533 4.533 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.276 1.276 22 C 0.137 3.863 23 N -0.736 5.736 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.123 0.877 27 H 0.135 0.865 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.158 0.842 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.029 0.971 36 H 0.089 0.911 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.705 -8.414 -2.892 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.148 3.852 4 C -0.299 4.299 5 C 0.171 3.829 6 C -0.250 4.250 7 C 0.147 3.853 8 O -0.245 6.245 9 C -0.076 4.076 10 C -0.365 4.365 11 C -0.072 4.072 12 C 0.017 3.983 13 H 0.013 0.987 14 C -0.571 4.571 15 H 0.073 0.927 16 C -0.182 4.182 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.202 1.202 22 C 0.012 3.988 23 N -0.364 5.364 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.141 0.859 27 H 0.153 0.847 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.175 0.825 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.302 -8.261 -2.872 17.625 hybrid contribution 0.595 0.593 0.161 0.855 sum -14.707 -7.668 -2.711 16.806 Atomic orbital electron populations 1.23360 0.76430 1.05603 1.02236 1.86029 1.23557 1.26254 1.88302 1.18267 0.91121 0.84058 0.91764 1.19740 0.92420 0.96185 1.21558 1.17138 0.84337 0.91745 0.89715 1.18853 0.91150 0.95360 1.19610 1.18374 0.89551 0.85320 0.92053 1.86089 1.20976 1.29403 1.88035 1.23359 0.76607 1.05327 1.02313 1.21014 1.01055 0.90548 1.23909 1.19921 0.95862 0.92131 0.99285 1.18861 0.91373 0.94234 0.93872 0.98700 1.21469 0.97076 0.97796 1.40767 0.92743 1.25739 0.98027 1.00072 0.94343 1.69968 1.11133 1.32271 1.42196 0.85489 0.78389 0.79876 0.77812 1.19311 1.20684 1.20184 1.21640 0.98330 0.82193 0.96590 1.45015 1.02151 1.12794 1.76407 0.91887 0.91747 0.85897 0.84700 0.91644 0.86444 0.91412 0.82457 0.93729 0.93407 0.92686 0.95244 0.89287 0.76030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.65 10.50 -92.37 -0.97 -9.62 16 3 C 0.19 6.14 6.68 22.46 0.15 6.29 16 4 C -0.28 -9.70 9.81 22.54 0.22 -9.48 16 5 C 0.28 11.36 6.47 38.12 0.25 11.60 16 6 C -0.24 -10.49 5.77 -19.62 -0.11 -10.60 16 7 C 0.19 7.06 6.65 22.53 0.15 7.21 16 8 O -0.33 -11.06 9.58 -92.32 -0.88 -11.94 16 9 C 0.02 0.36 9.81 113.37 1.11 1.48 16 10 C -0.34 -10.32 8.02 22.45 0.18 -10.14 16 11 C -0.03 -1.66 4.68 29.77 0.14 -1.52 16 12 C 0.04 1.91 2.25 -11.45 -0.03 1.88 16 13 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 14 C -0.53 -30.00 8.55 25.60 0.22 -29.78 16 15 H 0.05 3.04 7.75 -2.91 -0.02 3.02 16 16 C 0.02 0.94 5.31 84.65 0.45 1.39 16 17 N -0.92 -52.01 11.37 21.44 0.24 -51.77 16 18 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.14 6.66 6.21 86.44 0.54 7.20 16 23 N -0.74 -30.67 5.80 -337.76 -1.96 -32.63 16 24 H 0.06 0.88 7.67 -2.39 -0.02 0.87 16 25 H 0.06 0.88 7.65 -2.39 -0.02 0.87 16 26 H 0.12 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.13 7.64 -2.39 -0.02 1.12 16 31 H 0.16 3.47 4.50 -2.91 -0.01 3.46 16 32 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 33 H 0.05 2.31 7.73 -2.39 -0.02 2.29 16 34 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 4.67 6.11 -2.39 -0.01 4.66 16 37 H 0.40 14.55 8.86 -92.71 -0.82 13.73 16 Total: -1.00 -66.09 300.73 3.10 -62.99 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.27 Total: 20.59 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 4.38 Total: -23.07 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.71 Total: -84.40 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.85 Total: -21.56 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.09 3.10 -62.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.027 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds