Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35890 * 117.00310 * 2 1 4 4 C 1.38583 * 120.07781 * 180.02562 * 3 2 1 5 5 C 1.38996 * 120.11344 * 179.97438 * 4 3 2 6 6 C 1.38601 * 120.10712 * 0.16599 * 5 4 3 7 7 C 1.38995 * 119.62143 * 359.78818 * 6 5 4 8 8 O 1.35894 * 119.86905 * 180.13980 * 7 6 5 9 9 C 1.42895 * 117.00240 * 179.97438 * 8 7 6 10 10 C 1.38570 * 120.26779 * 0.12081 * 7 6 5 11 11 C 1.50606 * 121.49950 * 179.57006 * 6 5 4 12 12 C 1.52858 * 110.48619 * 20.70072 * 11 6 5 13 13 H 1.08999 * 109.69154 * 68.48342 * 12 11 6 14 14 C 1.50698 * 109.58121 * 188.82063 * 12 11 6 15 15 H 1.07993 * 120.00463 * 94.55681 * 14 12 11 16 16 C 1.37880 * 119.99579 * 274.55596 * 14 12 11 17 17 N 1.31513 * 119.99985 * 355.15651 * 16 14 12 18 18 Si 1.86802 * 119.99998 * 175.15857 * 16 14 12 19 19 H 1.48505 * 109.47144 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47157 * 240.00128 * 18 16 14 21 21 H 1.48490 * 109.47538 * 119.99719 * 18 16 14 22 22 C 1.53436 * 108.82383 * 308.62120 * 12 11 6 23 23 N 1.39931 * 119.06718 * 180.21532 * 5 4 3 24 24 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47310 * 299.99652 * 1 2 3 26 26 H 1.09000 * 109.46988 * 60.00211 * 1 2 3 27 27 H 1.08001 * 119.94125 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47698 * 300.00197 * 9 8 7 29 29 H 1.09004 * 109.47173 * 60.00407 * 9 8 7 30 30 H 1.09002 * 109.47036 * 180.02562 * 9 8 7 31 31 H 1.08004 * 119.98084 * 180.02562 * 10 7 6 32 32 H 1.08997 * 109.30308 * 260.39113 * 11 6 5 33 33 H 1.09003 * 109.30248 * 141.00525 * 11 6 5 34 34 H 0.96999 * 120.00521 * 5.17726 * 17 16 14 35 35 H 1.09004 * 109.79369 * 182.77705 * 22 12 11 36 36 H 1.09003 * 109.79311 * 303.63043 * 22 12 11 37 37 H 0.96999 * 120.52739 * 13.40796 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4298 1.2851 -0.0005 5 6 4.0617 2.5231 -0.0011 6 6 3.3098 3.6874 0.0024 7 6 1.9220 3.6091 0.0019 8 8 1.1799 4.7475 0.0025 9 6 -0.2410 4.5956 0.0014 10 6 1.2922 2.3748 0.0006 11 6 3.9616 5.0451 0.0116 12 6 5.4024 4.9502 -0.4903 13 1 5.4059 4.7071 -1.5528 14 6 6.1013 6.2672 -0.2712 15 1 6.6888 6.4249 0.6212 16 6 5.9906 7.2709 -1.2100 17 7 5.3554 7.0474 -2.3397 18 14 6.7431 8.9480 -0.8775 19 1 7.3973 8.9415 0.4557 20 1 5.6774 9.9820 -0.9003 21 1 7.7522 9.2540 -1.9230 22 6 6.1274 3.8471 0.2918 23 7 5.4601 2.5727 -0.0062 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.0183 0.3795 -0.0005 28 1 -0.5472 4.0469 -0.8892 29 1 -0.5483 4.0454 0.8907 30 1 -0.7114 5.5789 0.0015 31 1 0.2136 2.3193 -0.0002 32 1 3.9594 5.4390 1.0279 33 1 3.3990 5.7193 -0.6342 34 1 4.9005 6.2026 -2.4815 35 1 7.1710 3.7989 -0.0193 36 1 6.0692 4.0531 1.3606 37 1 5.9805 1.7781 -0.2031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084784697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = -55.888880 kcal Electronic energy + Delta-G solvation = -20126.562104 eV Core-core repulsion = 17062.057857 eV Total energy + Delta-G solvation = -3064.504246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32282 -38.59624 -37.90049 -34.89220 -33.25377 -31.39574 -29.40659 -28.90731 -27.57251 -26.42651 -24.33324 -23.78306 -21.75660 -21.64500 -19.07208 -18.40354 -17.02556 -16.46768 -16.02627 -15.73414 -15.28599 -15.16360 -14.85056 -14.47483 -14.03875 -13.71058 -13.50158 -12.86850 -12.48094 -12.43449 -12.25657 -11.98511 -11.59912 -11.49979 -11.11272 -11.06514 -10.93082 -10.71072 -10.40812 -10.10420 -9.77395 -9.52432 -8.93834 -8.51235 -8.28716 -7.44767 -6.88380 -6.32783 -4.04724 1.95132 1.99113 3.31789 3.45744 3.49586 3.59531 3.62632 4.22472 4.23579 4.56257 5.03618 5.12571 5.18054 5.25314 5.28520 5.38769 5.43348 5.49410 5.59890 5.66350 5.75861 5.94786 6.14869 6.27193 6.44217 6.55955 6.66525 6.74177 6.77141 6.93699 7.22156 7.45732 7.48253 7.59311 7.74811 7.95002 8.25840 8.32348 8.46830 8.90095 9.68838 11.06358 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027015 B = 0.005731 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.218834 B = 4884.241652 C = 5680.835094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.185 3.815 4 C -0.264 4.264 5 C 0.287 3.713 6 C -0.199 4.199 7 C 0.193 3.807 8 O -0.305 6.305 9 C 0.030 3.970 10 C -0.350 4.350 11 C -0.050 4.050 12 C 0.018 3.982 13 H 0.038 0.962 14 C -0.596 4.596 15 H 0.051 0.949 16 C 0.023 3.977 17 N -0.911 5.911 18 Si 1.072 2.928 19 H -0.289 1.289 20 H -0.287 1.287 21 H -0.288 1.288 22 C 0.131 3.869 23 N -0.743 5.743 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.272 0.728 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -10.595 4.895 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.140 3.860 4 C -0.288 4.288 5 C 0.181 3.819 6 C -0.205 4.205 7 C 0.146 3.854 8 O -0.217 6.217 9 C -0.066 4.066 10 C -0.371 4.371 11 C -0.087 4.087 12 C -0.002 4.002 13 H 0.056 0.944 14 C -0.635 4.635 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.546 5.546 18 Si 0.901 3.099 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.214 1.214 22 C 0.007 3.993 23 N -0.370 5.370 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.909 -8.894 4.268 13.292 hybrid contribution -0.750 -1.909 0.598 2.136 sum -9.659 -10.802 4.866 15.286 Atomic orbital electron populations 1.22954 0.79089 1.03195 1.01193 1.86013 1.20852 1.27498 1.88919 1.18160 0.91302 0.83005 0.93578 1.19586 0.91399 0.96563 1.21247 1.16888 0.84186 0.91097 0.89772 1.19057 0.89685 0.96675 1.15052 1.18368 0.90289 0.84039 0.92658 1.86158 1.18149 1.29261 1.88138 1.22975 0.79567 1.03296 1.00714 1.20807 0.99478 0.91890 1.24927 1.20398 0.97657 0.89943 1.00732 1.19175 0.91259 0.93951 0.95801 0.94404 1.21861 1.34103 0.98584 1.08929 0.93032 1.25793 0.96377 1.03351 0.92641 1.70708 1.32356 1.27882 1.23674 0.83510 0.76127 0.75059 0.75228 1.21497 1.21376 1.21427 1.21865 0.96018 0.82504 0.98878 1.45003 1.02089 1.12816 1.77111 0.88728 0.92978 0.92926 0.85979 0.93119 0.93185 0.88562 0.85828 0.92808 0.91707 0.91594 0.91142 0.93442 0.77202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.70 10.50 -19.39 -0.20 -4.90 16 3 C 0.19 3.13 6.68 -39.29 -0.26 2.87 16 4 C -0.26 -4.66 9.81 -39.17 -0.38 -5.05 16 5 C 0.29 5.64 6.47 -83.75 -0.54 5.10 16 6 C -0.20 -4.28 5.77 -104.25 -0.60 -4.88 16 7 C 0.19 3.75 6.65 -39.18 -0.26 3.49 16 8 O -0.30 -5.67 9.58 -19.41 -0.19 -5.85 16 9 C 0.03 0.38 9.81 101.05 0.99 1.37 16 10 C -0.35 -5.83 8.02 -39.30 -0.32 -6.14 16 11 C -0.05 -1.19 4.72 -28.00 -0.13 -1.33 16 12 C 0.02 0.44 2.00 -91.62 -0.18 0.26 16 13 H 0.04 1.05 6.66 -51.93 -0.35 0.70 16 14 C -0.60 -16.36 8.31 -34.44 -0.29 -16.65 16 15 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 16 C 0.02 0.66 5.45 -17.82 -0.10 0.56 16 17 N -0.91 -27.49 13.63 55.43 0.76 -26.74 16 18 Si 1.07 25.09 29.91 -169.99 -5.08 20.00 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 C 0.13 2.71 6.38 -3.59 -0.02 2.69 16 23 N -0.74 -13.68 5.80 -58.11 -0.34 -14.02 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 28 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 29 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.12 1.68 4.50 -52.48 -0.24 1.45 16 32 H 0.05 1.31 8.11 -51.93 -0.42 0.89 16 33 H 0.06 1.71 7.73 -51.93 -0.40 1.31 16 34 H 0.27 8.30 6.65 -40.82 -0.27 8.03 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.39 6.01 8.86 -40.82 -0.36 5.64 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -31.86 302.20 -6.55 -38.41 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.95 Total: 4.95 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.11 Total: -16.41 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.42 Total: -40.76 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.39 Total: -10.76 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.86 -6.55 -38.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.474 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds