Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35890 * 117.00310 * 2 1 4 4 C 1.38583 * 120.07781 * 180.02562 * 3 2 1 5 5 C 1.38996 * 120.11344 * 179.97438 * 4 3 2 6 6 C 1.38601 * 120.10712 * 0.16599 * 5 4 3 7 7 C 1.38995 * 119.62143 * 359.78818 * 6 5 4 8 8 O 1.35894 * 119.86905 * 180.13980 * 7 6 5 9 9 C 1.42895 * 117.00240 * 179.97438 * 8 7 6 10 10 C 1.38570 * 120.26779 * 0.12081 * 7 6 5 11 11 C 1.50606 * 121.49950 * 179.57006 * 6 5 4 12 12 C 1.52858 * 110.48619 * 20.70072 * 11 6 5 13 13 H 1.08999 * 109.69154 * 68.48342 * 12 11 6 14 14 C 1.50698 * 109.58121 * 188.82063 * 12 11 6 15 15 H 1.07993 * 120.00463 * 94.55681 * 14 12 11 16 16 C 1.37880 * 119.99579 * 274.55596 * 14 12 11 17 17 N 1.31513 * 119.99985 * 355.15651 * 16 14 12 18 18 Si 1.86802 * 119.99998 * 175.15857 * 16 14 12 19 19 H 1.48505 * 109.47144 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47157 * 240.00128 * 18 16 14 21 21 H 1.48490 * 109.47538 * 119.99719 * 18 16 14 22 22 C 1.53436 * 108.82383 * 308.62120 * 12 11 6 23 23 N 1.39931 * 119.06718 * 180.21532 * 5 4 3 24 24 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47310 * 299.99652 * 1 2 3 26 26 H 1.09000 * 109.46988 * 60.00211 * 1 2 3 27 27 H 1.08001 * 119.94125 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47698 * 300.00197 * 9 8 7 29 29 H 1.09004 * 109.47173 * 60.00407 * 9 8 7 30 30 H 1.09002 * 109.47036 * 180.02562 * 9 8 7 31 31 H 1.08004 * 119.98084 * 180.02562 * 10 7 6 32 32 H 1.08997 * 109.30308 * 260.39113 * 11 6 5 33 33 H 1.09003 * 109.30248 * 141.00525 * 11 6 5 34 34 H 0.96999 * 120.00521 * 5.17726 * 17 16 14 35 35 H 1.09004 * 109.79369 * 182.77705 * 22 12 11 36 36 H 1.09003 * 109.79311 * 303.63043 * 22 12 11 37 37 H 0.96999 * 120.52739 * 13.40796 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4298 1.2851 -0.0005 5 6 4.0617 2.5231 -0.0011 6 6 3.3098 3.6874 0.0024 7 6 1.9220 3.6091 0.0019 8 8 1.1799 4.7475 0.0025 9 6 -0.2410 4.5956 0.0014 10 6 1.2922 2.3748 0.0006 11 6 3.9616 5.0451 0.0116 12 6 5.4024 4.9502 -0.4903 13 1 5.4059 4.7071 -1.5528 14 6 6.1013 6.2672 -0.2712 15 1 6.6888 6.4249 0.6212 16 6 5.9906 7.2709 -1.2100 17 7 5.3554 7.0474 -2.3397 18 14 6.7431 8.9480 -0.8775 19 1 7.3973 8.9415 0.4557 20 1 5.6774 9.9820 -0.9003 21 1 7.7522 9.2540 -1.9230 22 6 6.1274 3.8471 0.2918 23 7 5.4601 2.5727 -0.0062 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.0183 0.3795 -0.0005 28 1 -0.5472 4.0469 -0.8892 29 1 -0.5483 4.0454 0.8907 30 1 -0.7114 5.5789 0.0015 31 1 0.2136 2.3193 -0.0002 32 1 3.9594 5.4390 1.0279 33 1 3.3990 5.7193 -0.6342 34 1 4.9005 6.2026 -2.4815 35 1 7.1710 3.7989 -0.0193 36 1 6.0692 4.0531 1.3606 37 1 5.9805 1.7781 -0.2031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084784697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = -77.574635 kcal Electronic energy + Delta-G solvation = -20127.502468 eV Core-core repulsion = 17062.057857 eV Total energy + Delta-G solvation = -3065.444611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.69642 -39.81618 -39.39890 -36.54459 -34.98354 -33.17234 -30.96855 -30.27814 -28.63767 -27.64595 -26.19767 -25.48287 -23.34460 -23.13507 -20.73740 -19.74396 -18.80061 -17.98513 -17.38129 -16.94289 -16.68196 -16.36998 -16.27579 -15.78050 -15.60293 -15.59732 -15.05570 -14.39474 -14.05606 -13.94201 -13.75696 -13.27209 -13.21215 -12.86956 -12.65151 -12.39648 -12.25220 -12.20828 -11.99852 -11.89804 -11.59230 -11.26742 -10.62313 -10.48981 -10.28415 -8.86814 -8.59850 -8.38838 -6.30929 0.52333 0.58227 1.54705 1.64129 1.79966 2.11850 2.41476 2.58522 2.79161 2.84963 3.22735 4.02719 4.05706 4.15893 4.20602 4.30873 4.34634 4.37135 4.40507 4.42010 4.46353 4.58442 4.66622 4.72273 4.79779 4.88537 4.93169 5.19852 5.25173 5.35221 5.49103 5.53941 5.64358 6.01510 6.22939 6.27134 6.32330 6.60671 6.65322 6.96235 7.51454 8.79303 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027015 B = 0.005731 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.218834 B = 4884.241652 C = 5680.835094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.194 3.806 4 C -0.268 4.268 5 C 0.277 3.723 6 C -0.245 4.245 7 C 0.188 3.812 8 O -0.337 6.337 9 C 0.018 3.982 10 C -0.342 4.342 11 C -0.029 4.029 12 C 0.013 3.987 13 H 0.003 0.997 14 C -0.603 4.603 15 H 0.053 0.947 16 C -0.030 4.030 17 N -0.939 5.939 18 Si 1.119 2.881 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.279 1.279 22 C 0.143 3.857 23 N -0.736 5.736 24 H 0.125 0.875 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.143 0.857 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.157 0.843 32 H 0.037 0.963 33 H 0.025 0.975 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 -12.186 5.853 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.147 3.853 4 C -0.292 4.292 5 C 0.171 3.829 6 C -0.251 4.251 7 C 0.141 3.859 8 O -0.250 6.250 9 C -0.076 4.076 10 C -0.363 4.363 11 C -0.067 4.067 12 C -0.006 4.006 13 H 0.021 0.979 14 C -0.642 4.642 15 H 0.072 0.928 16 C -0.228 4.228 17 N -0.576 5.576 18 Si 0.941 3.059 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.205 1.205 22 C 0.019 3.981 23 N -0.366 5.366 24 H 0.143 0.857 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.161 0.839 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.174 0.826 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.049 -10.533 5.238 15.471 hybrid contribution -0.593 -1.529 0.315 1.670 sum -10.643 -12.062 5.553 17.018 Atomic orbital electron populations 1.23369 0.76428 1.05702 1.02174 1.86026 1.23531 1.26040 1.88251 1.18277 0.91294 0.83947 0.91765 1.19755 0.92282 0.96243 1.20887 1.17021 0.84406 0.91410 0.90041 1.19000 0.91280 0.95618 1.19159 1.18500 0.89845 0.85339 0.92225 1.86123 1.21108 1.29770 1.88016 1.23357 0.76580 1.05247 1.02387 1.21044 1.01132 0.90565 1.23542 1.19965 0.96837 0.91428 0.98496 1.19128 0.92375 0.94725 0.94407 0.97854 1.22246 1.33546 0.99730 1.08647 0.92824 1.27263 0.96295 1.07052 0.92152 1.70840 1.34285 1.27268 1.25217 0.82923 0.75776 0.70909 0.76317 1.19200 1.21032 1.20507 1.21540 0.96102 0.82351 0.98106 1.44776 1.01998 1.12491 1.77350 0.85680 0.91779 0.92052 0.83939 0.91668 0.91050 0.86745 0.82554 0.94432 0.95608 0.93393 0.89979 0.93298 0.75176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.41 10.50 -92.31 -0.97 -9.38 16 3 C 0.19 6.06 6.68 22.46 0.15 6.21 16 4 C -0.27 -9.01 9.81 22.53 0.22 -8.79 16 5 C 0.28 10.88 6.47 38.12 0.25 11.12 16 6 C -0.25 -10.84 5.77 -19.63 -0.11 -10.95 16 7 C 0.19 7.29 6.65 22.53 0.15 7.44 16 8 O -0.34 -12.66 9.58 -92.36 -0.88 -13.54 16 9 C 0.02 0.43 9.81 113.37 1.11 1.55 16 10 C -0.34 -10.65 8.02 22.45 0.18 -10.47 16 11 C -0.03 -1.50 4.72 29.77 0.14 -1.36 16 12 C 0.01 0.69 2.00 -11.44 -0.02 0.67 16 13 H 0.00 0.19 6.66 -2.39 -0.02 0.18 16 14 C -0.60 -34.14 8.31 25.60 0.21 -33.92 16 15 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 16 C -0.03 -1.72 5.45 84.66 0.46 -1.26 16 17 N -0.94 -59.12 13.63 21.45 0.29 -58.83 16 18 Si 1.12 50.99 29.91 68.60 2.05 53.04 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.14 6.04 6.38 86.45 0.55 6.59 16 23 N -0.74 -26.98 5.80 -337.76 -1.96 -28.93 16 24 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 26 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 27 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 28 H 0.06 1.34 7.65 -2.39 -0.02 1.32 16 29 H 0.07 1.37 7.65 -2.39 -0.02 1.35 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.16 3.69 4.50 -2.91 -0.01 3.68 16 32 H 0.04 1.95 8.11 -2.39 -0.02 1.93 16 33 H 0.03 1.46 7.73 -2.39 -0.02 1.44 16 34 H 0.26 16.60 6.65 -92.71 -0.62 15.98 16 35 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.41 12.07 8.86 -92.71 -0.82 11.25 16 Total: -1.00 -72.25 302.20 3.35 -68.90 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.42 Total: 20.53 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 4.40 Total: -31.78 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -1.67 Total: -87.76 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.85 Total: -22.93 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -72.25 3.35 -68.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084784697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.678 kcal (2) G-P(sol) polarization free energy of solvation -72.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds