Wall clock time and date at job start Mon Mar 30 2020 07:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35984 * 117.00032 * 2 1 4 4 C 1.38518 * 120.03708 * 0.24548 * 3 2 1 5 5 C 1.38831 * 119.92638 * 180.27276 * 4 3 2 6 6 N 1.39923 * 119.99989 * 179.70777 * 5 4 3 7 7 C 1.38868 * 119.99997 * 359.73351 * 5 4 3 8 8 C 1.38206 * 120.06724 * 0.02562 * 7 5 4 9 9 C 1.38541 * 120.07423 * 359.97125 * 8 7 5 10 10 O 1.36090 * 120.00033 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99967 * 354.71633 * 10 9 8 12 12 C 1.53002 * 109.47189 * 184.68949 * 11 10 9 13 13 C 1.50701 * 115.54784 * 81.17988 * 12 11 10 14 14 H 1.08004 * 119.99852 * 219.77587 * 13 12 11 15 15 C 1.37874 * 120.00068 * 39.77407 * 13 12 11 16 16 N 1.31508 * 120.00289 * 16.77771 * 15 13 12 17 17 Si 1.86799 * 119.99760 * 196.78489 * 15 13 12 18 18 H 1.48507 * 109.47451 * 89.99674 * 17 15 13 19 19 H 1.48498 * 109.47195 * 209.99716 * 17 15 13 20 20 H 1.48500 * 109.47267 * 329.99706 * 17 15 13 21 21 C 1.53001 * 117.49746 * 295.51054 * 12 11 10 22 22 C 1.53001 * 60.03082 * 252.49964 * 21 12 11 23 23 H 1.08993 * 109.47441 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46993 * 300.00247 * 1 2 3 25 25 H 1.09002 * 109.47078 * 59.99574 * 1 2 3 26 26 H 1.07994 * 120.03786 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00122 * 180.02562 * 6 5 4 28 28 H 0.97000 * 119.99743 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.96710 * 179.97438 * 7 5 4 30 30 H 1.08001 * 119.96271 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47260 * 64.69120 * 11 10 9 32 32 H 1.08993 * 109.47302 * 304.69055 * 11 10 9 33 33 H 0.96997 * 120.00234 * 184.98623 * 16 15 13 34 34 H 1.08997 * 117.50097 * 359.97438 * 21 12 11 35 35 H 1.09000 * 117.50059 * 144.99900 * 21 12 11 36 36 H 1.08994 * 117.50257 * 107.50647 * 22 21 12 37 37 H 1.09008 * 117.49479 * 252.52753 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2927 2.3738 0.0051 5 6 1.9253 3.6096 -0.0006 6 7 1.1655 4.7845 -0.0016 7 6 3.3122 3.6796 -0.0059 8 6 4.0641 2.5199 -0.0060 9 6 3.4358 1.2852 -0.0002 10 8 4.1776 0.1443 0.0002 11 6 5.5938 0.2911 -0.1227 12 6 6.2433 -1.0907 -0.2204 13 6 6.2113 -1.7289 -1.5853 14 1 6.0207 -2.7875 -1.6821 15 6 6.4252 -0.9612 -2.7104 16 7 6.9742 0.2287 -2.6000 17 14 5.9349 -1.6113 -4.3916 18 1 4.5357 -1.2116 -4.6882 19 1 6.8404 -1.0464 -5.4241 20 1 6.0387 -3.0926 -4.3991 21 6 6.1260 -2.0139 0.9940 22 6 7.4678 -1.3602 0.6577 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2142 2.3187 0.0096 27 1 1.6075 5.6480 -0.0060 28 1 0.1967 4.7356 0.0021 29 1 3.8038 4.6412 -0.0108 30 1 5.1426 2.5764 -0.0105 31 1 5.9821 0.8141 0.7513 32 1 5.8230 0.8646 -1.0207 33 1 7.0587 0.7982 -3.3806 34 1 5.5865 -1.6367 1.8628 35 1 6.0257 -3.0829 0.8059 36 1 7.8108 -0.5531 1.3050 37 1 8.2502 -1.9991 0.2477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088248932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:54 Heat of formation + Delta-G solvation = -18.327605 kcal Electronic energy + Delta-G solvation = -19948.262842 eV Core-core repulsion = 16885.387374 eV Total energy + Delta-G solvation = -3062.875467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96668 -37.91605 -37.16444 -35.78205 -33.11121 -32.14608 -29.85824 -28.32487 -26.66720 -25.98834 -25.21626 -21.98375 -21.47001 -21.03236 -19.06575 -18.02786 -17.07204 -16.75104 -16.03401 -15.50177 -15.17959 -14.99524 -14.76114 -14.26734 -14.09118 -13.90360 -13.28039 -12.81526 -12.44413 -12.28902 -11.85551 -11.61041 -11.30121 -11.14102 -11.01918 -10.91039 -10.58466 -10.42699 -10.27060 -10.08359 -9.39479 -9.26997 -8.88234 -8.64496 -8.15992 -8.00257 -6.63152 -6.08368 -4.04801 1.73535 2.09821 3.34062 3.40891 3.44249 3.65109 4.00152 4.19907 4.30144 4.44035 5.04595 5.16716 5.27167 5.33634 5.39823 5.59740 5.63600 5.73842 5.84963 6.02262 6.12072 6.28896 6.34901 6.49659 6.54597 6.68332 6.78016 6.83502 6.92616 7.06953 7.10075 7.38347 7.52162 7.55627 7.74252 7.91565 7.92103 8.42742 8.57251 8.89589 9.53576 10.97309 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.006263 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.465063 B = 4469.730482 C = 4584.450442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.298 6.298 3 C 0.130 3.870 4 C -0.250 4.250 5 C 0.196 3.804 6 N -0.885 5.885 7 C -0.191 4.191 8 C -0.130 4.130 9 C 0.076 3.924 10 O -0.297 6.297 11 C 0.088 3.912 12 C 0.051 3.949 13 C -0.477 4.477 14 H 0.063 0.937 15 C 0.070 3.930 16 N -0.880 5.880 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.198 4.198 22 C -0.191 4.191 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.125 0.875 27 H 0.394 0.606 28 H 0.392 0.608 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.022 0.978 32 H 0.109 0.891 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 7.704 5.173 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.083 3.917 4 C -0.274 4.274 5 C 0.094 3.906 6 N -0.426 5.426 7 C -0.214 4.214 8 C -0.150 4.150 9 C 0.028 3.972 10 O -0.210 6.210 11 C 0.013 3.987 12 C 0.050 3.950 13 C -0.514 4.514 14 H 0.081 0.919 15 C -0.132 4.132 16 N -0.517 5.517 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.235 4.235 22 C -0.229 4.229 23 H 0.114 0.886 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.143 0.857 27 H 0.222 0.778 28 H 0.219 0.781 29 H 0.136 0.864 30 H 0.155 0.845 31 H 0.040 0.960 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.011 7.346 5.056 14.169 hybrid contribution -0.562 0.460 -0.874 1.136 sum -11.572 7.806 4.182 14.572 Atomic orbital electron populations 1.22971 0.79725 1.03402 1.00562 1.86267 1.20025 1.26086 1.88744 1.18025 0.89292 0.84296 1.00047 1.20262 0.98973 0.90437 1.17680 1.17280 0.90616 0.86103 0.96575 1.42292 1.07928 1.05173 1.87243 1.20228 0.91353 0.98164 1.11679 1.20951 1.00536 0.90650 1.02852 1.18228 0.88306 0.87247 1.03456 1.86205 1.20788 1.26692 1.87342 1.22709 0.75556 0.99463 1.00945 1.18801 0.94622 0.90941 0.90613 1.20529 1.47189 0.95040 0.88661 0.91887 1.24902 0.93671 0.95518 0.99130 1.69915 1.40697 1.10566 1.30558 0.86648 0.78752 0.79381 0.83704 1.20368 1.21323 1.19716 1.22776 1.01035 0.98596 1.01142 1.22983 0.91953 1.02732 1.05259 0.88645 0.93299 0.93202 0.85692 0.77803 0.78121 0.86421 0.84537 0.95994 0.87319 0.92808 0.91101 0.90485 0.91650 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.63 10.28 -34.30 -0.35 -5.98 16 3 C 0.13 2.48 6.70 -39.14 -0.26 2.22 16 4 C -0.25 -3.88 8.88 -39.26 -0.35 -4.23 16 5 C 0.20 2.87 6.75 -83.71 -0.57 2.31 16 6 N -0.88 -9.07 9.10 32.44 0.30 -8.78 16 7 C -0.19 -3.04 9.89 -39.36 -0.39 -3.43 16 8 C -0.13 -2.48 9.03 -39.48 -0.36 -2.83 16 9 C 0.08 1.63 6.69 -39.13 -0.26 1.37 16 10 O -0.30 -7.35 9.89 -34.64 -0.34 -7.70 16 11 C 0.09 2.17 4.43 37.16 0.16 2.33 16 12 C 0.05 1.32 1.93 -155.62 -0.30 1.02 16 13 C -0.48 -13.49 8.98 -34.44 -0.31 -13.80 16 14 H 0.06 1.78 7.87 -52.48 -0.41 1.37 16 15 C 0.07 1.94 5.12 -17.82 -0.09 1.85 16 16 N -0.88 -24.69 11.10 55.43 0.62 -24.07 16 17 Si 0.89 21.63 29.57 -169.99 -5.03 16.60 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 C -0.20 -4.58 9.92 -26.73 -0.27 -4.84 16 22 C -0.19 -4.46 9.89 -26.69 -0.26 -4.72 16 23 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 25 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 26 H 0.13 1.56 6.30 -52.49 -0.33 1.23 16 27 H 0.39 3.30 8.84 -40.82 -0.36 2.94 16 28 H 0.39 3.19 8.84 -40.82 -0.36 2.83 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.14 2.59 6.31 -52.49 -0.33 2.25 16 31 H 0.02 0.50 7.50 -51.93 -0.39 0.11 16 32 H 0.11 2.90 4.96 -51.93 -0.26 2.64 16 33 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.06 1.41 8.08 -51.93 -0.42 0.99 16 37 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -31.44 312.25 -7.27 -38.71 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.91 Total: 7.92 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.26 Total: -21.41 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.91 Total: -32.85 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.70 Total: -13.68 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.44 -7.27 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.380 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds