Wall clock time and date at job start Mon Mar 30 2020 07:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35984 * 117.00032 * 2 1 4 4 C 1.38518 * 120.03708 * 0.24548 * 3 2 1 5 5 C 1.38831 * 119.92638 * 180.27276 * 4 3 2 6 6 N 1.39923 * 119.99989 * 179.70777 * 5 4 3 7 7 C 1.38868 * 119.99997 * 359.73351 * 5 4 3 8 8 C 1.38206 * 120.06724 * 0.02562 * 7 5 4 9 9 C 1.38541 * 120.07423 * 359.97125 * 8 7 5 10 10 O 1.36090 * 120.00033 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99967 * 354.71633 * 10 9 8 12 12 C 1.53002 * 109.47189 * 184.68949 * 11 10 9 13 13 C 1.50701 * 115.54784 * 81.17988 * 12 11 10 14 14 H 1.08004 * 119.99852 * 219.77587 * 13 12 11 15 15 C 1.37874 * 120.00068 * 39.77407 * 13 12 11 16 16 N 1.31508 * 120.00289 * 16.77771 * 15 13 12 17 17 Si 1.86799 * 119.99760 * 196.78489 * 15 13 12 18 18 H 1.48507 * 109.47451 * 89.99674 * 17 15 13 19 19 H 1.48498 * 109.47195 * 209.99716 * 17 15 13 20 20 H 1.48500 * 109.47267 * 329.99706 * 17 15 13 21 21 C 1.53001 * 117.49746 * 295.51054 * 12 11 10 22 22 C 1.53001 * 60.03082 * 252.49964 * 21 12 11 23 23 H 1.08993 * 109.47441 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46993 * 300.00247 * 1 2 3 25 25 H 1.09002 * 109.47078 * 59.99574 * 1 2 3 26 26 H 1.07994 * 120.03786 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00122 * 180.02562 * 6 5 4 28 28 H 0.97000 * 119.99743 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.96710 * 179.97438 * 7 5 4 30 30 H 1.08001 * 119.96271 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47260 * 64.69120 * 11 10 9 32 32 H 1.08993 * 109.47302 * 304.69055 * 11 10 9 33 33 H 0.96997 * 120.00234 * 184.98623 * 16 15 13 34 34 H 1.08997 * 117.50097 * 359.97438 * 21 12 11 35 35 H 1.09000 * 117.50059 * 144.99900 * 21 12 11 36 36 H 1.08994 * 117.50257 * 107.50647 * 22 21 12 37 37 H 1.09008 * 117.49479 * 252.52753 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2927 2.3738 0.0051 5 6 1.9253 3.6096 -0.0006 6 7 1.1655 4.7845 -0.0016 7 6 3.3122 3.6796 -0.0059 8 6 4.0641 2.5199 -0.0060 9 6 3.4358 1.2852 -0.0002 10 8 4.1776 0.1443 0.0002 11 6 5.5938 0.2911 -0.1227 12 6 6.2433 -1.0907 -0.2204 13 6 6.2113 -1.7289 -1.5853 14 1 6.0207 -2.7875 -1.6821 15 6 6.4252 -0.9612 -2.7104 16 7 6.9742 0.2287 -2.6000 17 14 5.9349 -1.6113 -4.3916 18 1 4.5357 -1.2116 -4.6882 19 1 6.8404 -1.0464 -5.4241 20 1 6.0387 -3.0926 -4.3991 21 6 6.1260 -2.0139 0.9940 22 6 7.4678 -1.3602 0.6577 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2142 2.3187 0.0096 27 1 1.6075 5.6480 -0.0060 28 1 0.1967 4.7356 0.0021 29 1 3.8038 4.6412 -0.0108 30 1 5.1426 2.5764 -0.0105 31 1 5.9821 0.8141 0.7513 32 1 5.8230 0.8646 -1.0207 33 1 7.0587 0.7982 -3.3806 34 1 5.5865 -1.6367 1.8628 35 1 6.0257 -3.0829 0.8059 36 1 7.8108 -0.5531 1.3050 37 1 8.2502 -1.9991 0.2477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088248932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:54 Heat of formation + Delta-G solvation = -38.594540 kcal Electronic energy + Delta-G solvation = -19949.141682 eV Core-core repulsion = 16885.387374 eV Total energy + Delta-G solvation = -3063.754307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32132 -39.51177 -38.49566 -37.51641 -34.32729 -34.23561 -31.15127 -29.57743 -28.13124 -27.56425 -27.12397 -23.30508 -23.05290 -22.65519 -20.99439 -19.35372 -18.53771 -18.22937 -17.68292 -16.94339 -16.60158 -16.31644 -16.18997 -15.97577 -15.60072 -15.45969 -14.89234 -14.37092 -13.79340 -13.62909 -13.55326 -13.19635 -13.02725 -12.80751 -12.45063 -12.33770 -12.24905 -12.16612 -11.99989 -11.81981 -11.32328 -11.03902 -10.60332 -10.44359 -10.00602 -9.40015 -8.19364 -7.92458 -6.19404 0.42364 0.75353 1.38242 1.42485 1.50076 2.41489 2.48101 2.58235 2.92126 3.00310 3.08926 3.68251 3.93140 4.17937 4.25471 4.31690 4.40910 4.43979 4.48473 4.52726 4.61569 4.73184 4.76570 4.87511 4.93105 5.00161 5.09107 5.18708 5.30385 5.50096 5.52740 5.54489 5.74719 5.83973 6.35659 6.38269 6.61168 6.76607 6.99639 7.12545 7.39847 8.87455 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.006263 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.465063 B = 4469.730482 C = 4584.450442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.120 3.880 4 C -0.248 4.248 5 C 0.214 3.786 6 N -0.862 5.862 7 C -0.198 4.198 8 C -0.136 4.136 9 C 0.017 3.983 10 O -0.326 6.326 11 C 0.103 3.897 12 C 0.011 3.989 13 C -0.503 4.503 14 H 0.051 0.949 15 C 0.029 3.971 16 N -0.897 5.897 17 Si 0.943 3.057 18 H -0.282 1.282 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.183 4.183 22 C -0.180 4.180 23 H 0.111 0.889 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.159 0.841 27 H 0.408 0.592 28 H 0.407 0.593 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.029 0.971 32 H 0.085 0.915 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.214 9.276 5.281 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.074 3.926 4 C -0.271 4.271 5 C 0.109 3.891 6 N -0.405 5.405 7 C -0.221 4.221 8 C -0.156 4.156 9 C -0.030 4.030 10 O -0.241 6.241 11 C 0.029 3.971 12 C 0.011 3.989 13 C -0.540 4.540 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.536 5.536 17 Si 0.769 3.231 18 H -0.208 1.208 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.220 4.220 22 C -0.218 4.218 23 H 0.129 0.871 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.177 0.823 27 H 0.238 0.762 28 H 0.237 0.763 29 H 0.162 0.838 30 H 0.142 0.858 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.043 8.961 5.172 16.649 hybrid contribution -0.094 0.091 -0.867 0.877 sum -13.138 9.053 4.304 16.525 Atomic orbital electron populations 1.23322 0.76756 1.05191 1.02247 1.86205 1.23274 1.26641 1.88865 1.18275 0.88817 0.85573 0.99975 1.20552 1.00414 0.89457 1.16714 1.17381 0.90479 0.87291 0.93951 1.42249 1.08682 1.04355 1.85195 1.20480 0.92144 0.98114 1.11349 1.20974 1.00287 0.91209 1.03089 1.18696 0.89424 0.87068 1.07829 1.86115 1.20380 1.28936 1.88664 1.22334 0.76440 0.98391 0.99961 1.18997 0.96919 0.92338 0.90690 1.20741 1.47980 0.94774 0.90472 0.93115 1.25544 0.93614 0.95896 1.02039 1.69998 1.40989 1.11242 1.31331 0.85782 0.78118 0.79088 0.80148 1.20781 1.20259 1.19161 1.22761 1.00731 0.98325 1.00187 1.22960 0.91509 1.02931 1.04409 0.87055 0.91120 0.91759 0.82341 0.76220 0.76318 0.83758 0.85784 0.95317 0.89753 0.92680 0.89892 0.90224 0.89914 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.34 -12.69 10.28 -79.40 -0.82 -13.50 16 3 C 0.12 4.57 6.70 22.55 0.15 4.73 16 4 C -0.25 -7.09 8.88 22.48 0.20 -6.89 16 5 C 0.21 5.62 6.75 38.14 0.26 5.87 16 6 N -0.86 -13.86 9.10 -51.29 -0.47 -14.33 16 7 C -0.20 -5.97 9.89 22.41 0.22 -5.75 16 8 C -0.14 -5.27 9.03 22.33 0.20 -5.07 16 9 C 0.02 0.74 6.69 22.56 0.15 0.89 16 10 O -0.33 -16.91 9.89 -80.60 -0.80 -17.71 16 11 C 0.10 5.34 4.43 71.98 0.32 5.66 16 12 C 0.01 0.59 1.93 -52.90 -0.10 0.49 16 13 C -0.50 -29.26 8.98 25.60 0.23 -29.03 16 14 H 0.05 2.97 7.87 -2.91 -0.02 2.94 16 15 C 0.03 1.65 5.12 84.65 0.43 2.09 16 16 N -0.90 -51.61 11.10 21.44 0.24 -51.37 16 17 Si 0.94 45.15 29.57 68.60 2.03 47.18 16 18 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 C -0.18 -8.52 9.92 30.59 0.30 -8.21 16 22 C -0.18 -8.46 9.89 30.62 0.30 -8.16 16 23 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.07 1.31 7.65 -2.39 -0.02 1.29 16 25 H 0.06 1.28 7.67 -2.39 -0.02 1.26 16 26 H 0.16 3.32 6.30 -2.91 -0.02 3.30 16 27 H 0.41 4.94 8.84 -92.71 -0.82 4.13 16 28 H 0.41 4.60 8.84 -92.71 -0.82 3.78 16 29 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.12 4.95 6.31 -2.91 -0.02 4.93 16 31 H 0.03 1.38 7.50 -2.38 -0.02 1.36 16 32 H 0.08 4.73 4.96 -2.39 -0.01 4.71 16 33 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 34 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.08 3.54 8.08 -2.39 -0.02 3.52 16 37 H 0.08 3.70 8.14 -2.38 -0.02 3.68 16 Total: -1.00 -70.31 312.25 3.43 -66.88 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.54 Total: 24.70 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 3.78 Total: -41.84 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -0.23 Total: -65.70 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.61 Total: -31.21 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.31 3.43 -66.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.281 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds