Wall clock time and date at job start Mon Mar 30 2020 07:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47460 * 264.86224 * 3 2 1 5 5 H 1.48502 * 109.47109 * 24.86392 * 3 2 1 6 6 H 1.48505 * 109.47105 * 144.86079 * 3 2 1 7 7 C 1.37885 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99432 * 0.76248 * 7 2 1 9 9 C 1.50697 * 119.99938 * 180.75924 * 7 2 1 10 10 C 1.52998 * 115.54842 * 86.77136 * 9 7 2 11 11 N 1.46900 * 109.47087 * 64.81349 * 10 9 7 12 12 C 1.46901 * 110.99866 * 174.62903 * 11 10 9 13 13 C 1.53002 * 109.47166 * 183.46846 * 12 11 10 14 14 C 1.50696 * 109.47149 * 177.41844 * 13 12 11 15 15 C 1.38218 * 120.01267 * 100.00316 * 14 13 12 16 16 C 1.38225 * 120.02886 * 180.27672 * 15 14 13 17 17 C 1.38264 * 120.04894 * 359.49424 * 16 15 14 18 18 C 1.38176 * 120.02743 * 0.50364 * 17 16 15 19 19 C 1.38436 * 120.01515 * 280.02789 * 14 13 12 20 20 F 1.35091 * 120.02720 * 359.95420 * 19 14 13 21 21 C 1.53004 * 117.49680 * 232.43924 * 9 7 2 22 22 C 1.53005 * 117.50167 * 301.09600 * 9 7 2 23 23 H 0.96998 * 119.99381 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47035 * 304.81036 * 10 9 7 25 25 H 1.09005 * 109.46686 * 184.80835 * 10 9 7 26 26 H 1.00895 * 110.99819 * 298.58659 * 11 10 9 27 27 H 1.09004 * 109.46948 * 63.47274 * 12 11 10 28 28 H 1.08997 * 109.47401 * 303.47560 * 12 11 10 29 29 H 1.09004 * 109.46860 * 57.42517 * 13 12 11 30 30 H 1.08990 * 109.47467 * 297.42475 * 13 12 11 31 31 H 1.08002 * 119.98408 * 359.97438 * 15 14 13 32 32 H 1.08000 * 119.97177 * 179.72236 * 16 15 14 33 33 H 1.07999 * 119.98508 * 180.25719 * 17 16 15 34 34 H 1.07994 * 120.01550 * 179.76740 * 18 17 16 35 35 H 1.09000 * 117.49906 * 215.00426 * 21 9 7 36 36 H 1.08998 * 117.49604 * 0.02562 * 21 9 7 37 37 H 1.09004 * 117.49425 * 359.97438 * 22 9 7 38 38 H 1.08994 * 117.49434 * 144.97485 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6053 1.9837 -1.3944 5 1 1.3966 2.6815 0.5887 6 1 3.4883 1.4738 0.8059 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0115 9 6 3.5115 -1.1942 0.0178 10 6 4.1554 -1.1249 1.4040 11 7 3.8261 -2.3418 2.1582 12 6 4.5313 -2.3695 3.4466 13 6 4.2321 -3.6877 4.1635 14 6 5.0053 -3.7434 5.4558 15 6 4.3772 -3.4461 6.6506 16 6 5.0876 -3.4916 7.8355 17 6 6.4243 -3.8447 7.8282 18 6 7.0544 -4.1424 6.6350 19 6 6.3450 -4.0920 5.4467 20 9 6.9598 -4.3833 4.2796 21 6 4.2302 -2.0149 -1.0550 22 6 4.2312 -0.4861 -1.1318 23 1 -0.4849 0.8401 -0.0004 24 1 3.7767 -0.2531 1.9374 25 1 5.2374 -1.0446 1.2983 26 1 2.8294 -2.4271 2.2895 27 1 4.1944 -1.5361 4.0631 28 1 5.6043 -2.2844 3.2755 29 1 4.5270 -4.5223 3.5274 30 1 3.1649 -3.7519 4.3755 31 1 3.3322 -3.1733 6.6578 32 1 4.5970 -3.2547 8.7680 33 1 6.9773 -3.8839 8.7551 34 1 8.0994 -4.4145 6.6291 35 1 5.1619 -2.5055 -0.7732 36 1 3.6131 -2.5544 -1.7734 37 1 3.6148 -0.0206 -1.9008 38 1 5.1633 0.0294 -0.9004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:55 Heat of formation + Delta-G solvation = -3.051444 kcal Electronic energy + Delta-G solvation = -19130.877706 eV Core-core repulsion = 16081.037452 eV Total energy + Delta-G solvation = -3049.840254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.90079 -39.23891 -37.34357 -35.27335 -32.48678 -32.03937 -30.67506 -28.41508 -25.86277 -24.40299 -22.89826 -22.38236 -21.46489 -20.97859 -18.86862 -17.63399 -16.56248 -16.22703 -15.89639 -15.62779 -15.25918 -14.82598 -14.43296 -14.02725 -13.93958 -13.42675 -13.08597 -12.90081 -12.78201 -12.62267 -12.25317 -11.97446 -11.68757 -11.33530 -11.12676 -10.99158 -10.89459 -10.58282 -10.33268 -9.99375 -9.50538 -9.10155 -8.92959 -8.74454 -8.58793 -8.39007 -7.64536 -6.08847 -4.10951 1.01481 1.04799 3.30905 3.39286 3.42660 3.44326 4.17105 4.44401 4.44420 4.59412 4.73221 4.91531 5.05264 5.16095 5.22066 5.30196 5.37339 5.53352 5.68334 5.81495 5.86670 5.92939 5.93905 6.07810 6.19585 6.21160 6.25350 6.28709 6.38435 6.45420 6.56717 6.60612 6.76280 6.86488 7.15358 7.25270 7.78590 7.81369 8.16214 8.56376 8.96429 9.55600 11.02958 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.004275 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.996469 B = 6547.927089 C = 7007.706066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.075 3.925 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.262 1.262 7 C -0.483 4.483 8 H 0.079 0.921 9 C 0.006 3.994 10 C 0.099 3.901 11 N -0.678 5.678 12 C 0.065 3.935 13 C -0.080 4.080 14 C -0.106 4.106 15 C -0.090 4.090 16 C -0.130 4.130 17 C -0.101 4.101 18 C -0.156 4.156 19 C 0.101 3.899 20 F -0.134 7.134 21 C -0.167 4.167 22 C -0.209 4.209 23 H 0.264 0.736 24 H 0.026 0.974 25 H 0.044 0.956 26 H 0.353 0.647 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.816 -6.293 14.884 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.126 4.126 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.030 4.030 11 N -0.310 5.310 12 C -0.065 4.065 13 C -0.117 4.117 14 C -0.108 4.108 15 C -0.108 4.108 16 C -0.149 4.149 17 C -0.119 4.119 18 C -0.175 4.175 19 C 0.081 3.919 20 F -0.113 7.113 21 C -0.205 4.205 22 C -0.247 4.247 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.172 0.828 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.134 -6.566 14.511 20.022 hybrid contribution 0.085 1.650 0.265 1.673 sum 12.219 -4.915 14.776 19.794 Atomic orbital electron populations 1.69901 1.06313 1.27005 1.50595 1.24995 0.94554 0.98987 0.94109 0.86856 0.80098 0.83307 0.78781 1.20302 1.22441 1.18687 1.20323 0.86623 0.94322 1.50835 0.90328 1.19336 0.94573 0.99408 0.86178 1.21617 0.97032 0.89587 0.94774 1.60321 1.14402 1.39903 1.16323 1.21838 0.99351 0.94636 0.90628 1.20550 0.99540 0.99761 0.91874 1.20076 0.92742 1.00862 0.97083 1.21051 1.00425 0.98194 0.91115 1.21204 0.94541 1.00763 0.98358 1.20969 0.94895 0.98737 0.97324 1.21145 1.00814 1.03936 0.91564 1.17622 0.91041 1.01600 0.81609 1.91514 1.82738 1.90777 1.46268 1.22680 1.01266 0.92139 1.04386 1.23011 1.01479 0.95452 1.04729 0.92671 0.95627 0.93721 0.82780 0.95885 0.91792 0.89618 0.90362 0.84937 0.85472 0.85313 0.84962 0.90932 0.89933 0.89590 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.82 24.77 -169.99 -4.21 17.61 16 4 H -0.28 -6.77 7.02 56.52 0.40 -6.37 16 5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.26 -6.23 5.96 56.52 0.34 -5.89 16 7 C -0.48 -13.25 8.91 -34.44 -0.31 -13.56 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 9 C 0.01 0.15 1.05 -155.66 -0.16 -0.02 16 10 C 0.10 2.11 5.25 -3.82 -0.02 2.09 16 11 N -0.68 -13.00 6.45 -113.78 -0.73 -13.74 16 12 C 0.07 1.04 5.65 -3.82 -0.02 1.02 16 13 C -0.08 -1.08 5.36 -27.88 -0.15 -1.23 16 14 C -0.11 -1.31 5.14 -104.56 -0.54 -1.85 16 15 C -0.09 -0.94 9.67 -39.59 -0.38 -1.32 16 16 C -0.13 -1.16 10.04 -39.58 -0.40 -1.55 16 17 C -0.10 -0.87 10.04 -39.59 -0.40 -1.27 16 18 C -0.16 -1.58 10.03 -39.51 -0.40 -1.97 16 19 C 0.10 1.26 7.24 -39.42 -0.29 0.97 16 20 F -0.13 -1.90 16.66 2.25 0.04 -1.86 16 21 C -0.17 -3.58 9.96 -26.69 -0.27 -3.84 16 22 C -0.21 -4.59 7.60 -26.69 -0.20 -4.80 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.03 0.58 6.74 -51.93 -0.35 0.23 16 25 H 0.04 0.89 8.06 -51.93 -0.42 0.48 16 26 H 0.35 7.10 8.33 -39.29 -0.33 6.77 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 1.05 8.11 -51.93 -0.42 0.62 16 29 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 30 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 31 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.09 1.98 7.10 -51.93 -0.37 1.61 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -29.73 318.77 -8.68 -38.40 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.72 Total: 6.38 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -3.62 Total: -25.30 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.04 Total: -40.03 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.21 Total: 17.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.73 -8.68 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.352 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds