Wall clock time and date at job start Mon Mar 30 2020 07:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47460 * 264.86224 * 3 2 1 5 5 H 1.48502 * 109.47109 * 24.86392 * 3 2 1 6 6 H 1.48505 * 109.47105 * 144.86079 * 3 2 1 7 7 C 1.37885 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99432 * 0.76248 * 7 2 1 9 9 C 1.50697 * 119.99938 * 180.75924 * 7 2 1 10 10 C 1.52998 * 115.54842 * 86.77136 * 9 7 2 11 11 N 1.46900 * 109.47087 * 64.81349 * 10 9 7 12 12 C 1.46901 * 110.99866 * 174.62903 * 11 10 9 13 13 C 1.53002 * 109.47166 * 183.46846 * 12 11 10 14 14 C 1.50696 * 109.47149 * 177.41844 * 13 12 11 15 15 C 1.38218 * 120.01267 * 100.00316 * 14 13 12 16 16 C 1.38225 * 120.02886 * 180.27672 * 15 14 13 17 17 C 1.38264 * 120.04894 * 359.49424 * 16 15 14 18 18 C 1.38176 * 120.02743 * 0.50364 * 17 16 15 19 19 C 1.38436 * 120.01515 * 280.02789 * 14 13 12 20 20 F 1.35091 * 120.02720 * 359.95420 * 19 14 13 21 21 C 1.53004 * 117.49680 * 232.43924 * 9 7 2 22 22 C 1.53005 * 117.50167 * 301.09600 * 9 7 2 23 23 H 0.96998 * 119.99381 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47035 * 304.81036 * 10 9 7 25 25 H 1.09005 * 109.46686 * 184.80835 * 10 9 7 26 26 H 1.00895 * 110.99819 * 298.58659 * 11 10 9 27 27 H 1.09004 * 109.46948 * 63.47274 * 12 11 10 28 28 H 1.08997 * 109.47401 * 303.47560 * 12 11 10 29 29 H 1.09004 * 109.46860 * 57.42517 * 13 12 11 30 30 H 1.08990 * 109.47467 * 297.42475 * 13 12 11 31 31 H 1.08002 * 119.98408 * 359.97438 * 15 14 13 32 32 H 1.08000 * 119.97177 * 179.72236 * 16 15 14 33 33 H 1.07999 * 119.98508 * 180.25719 * 17 16 15 34 34 H 1.07994 * 120.01550 * 179.76740 * 18 17 16 35 35 H 1.09000 * 117.49906 * 215.00426 * 21 9 7 36 36 H 1.08998 * 117.49604 * 0.02562 * 21 9 7 37 37 H 1.09004 * 117.49425 * 359.97438 * 22 9 7 38 38 H 1.08994 * 117.49434 * 144.97485 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6053 1.9837 -1.3944 5 1 1.3966 2.6815 0.5887 6 1 3.4883 1.4738 0.8059 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0115 9 6 3.5115 -1.1942 0.0178 10 6 4.1554 -1.1249 1.4040 11 7 3.8261 -2.3418 2.1582 12 6 4.5313 -2.3695 3.4466 13 6 4.2321 -3.6877 4.1635 14 6 5.0053 -3.7434 5.4558 15 6 4.3772 -3.4461 6.6506 16 6 5.0876 -3.4916 7.8355 17 6 6.4243 -3.8447 7.8282 18 6 7.0544 -4.1424 6.6350 19 6 6.3450 -4.0920 5.4467 20 9 6.9598 -4.3833 4.2796 21 6 4.2302 -2.0149 -1.0550 22 6 4.2312 -0.4861 -1.1318 23 1 -0.4849 0.8401 -0.0004 24 1 3.7767 -0.2531 1.9374 25 1 5.2374 -1.0446 1.2983 26 1 2.8294 -2.4271 2.2895 27 1 4.1944 -1.5361 4.0631 28 1 5.6043 -2.2844 3.2755 29 1 4.5270 -4.5223 3.5274 30 1 3.1649 -3.7519 4.3755 31 1 3.3322 -3.1733 6.6578 32 1 4.5970 -3.2547 8.7680 33 1 6.9773 -3.8839 8.7551 34 1 8.0994 -4.4145 6.6291 35 1 5.1619 -2.5055 -0.7732 36 1 3.6131 -2.5544 -1.7734 37 1 3.6148 -0.0206 -1.9008 38 1 5.1633 0.0294 -0.9004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:54 Heat of formation + Delta-G solvation = -20.548737 kcal Electronic energy + Delta-G solvation = -19131.636445 eV Core-core repulsion = 16081.037452 eV Total energy + Delta-G solvation = -3050.598993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.86416 -40.05449 -39.05731 -36.64626 -34.22346 -33.57986 -31.44580 -29.58779 -27.81785 -25.93050 -23.69484 -23.65251 -23.13141 -22.02690 -20.77748 -18.49355 -18.17851 -17.48796 -16.92339 -16.78622 -16.69893 -16.44456 -15.59662 -15.52684 -15.00634 -14.80291 -14.68066 -14.18938 -13.96591 -13.95297 -13.63018 -13.28820 -13.04910 -12.80118 -12.54488 -12.50217 -12.13374 -11.99391 -11.86900 -11.82347 -11.39780 -10.89033 -10.62461 -10.25985 -9.88583 -9.57749 -9.20519 -8.27627 -6.33352 0.21426 0.28328 1.35406 1.37526 1.49080 2.37590 2.65072 3.03546 3.08859 3.35621 3.51487 3.79120 3.93340 4.03000 4.14237 4.25545 4.27976 4.41396 4.44561 4.44680 4.54168 4.59136 4.72234 4.78132 4.88071 4.88941 4.98864 5.11050 5.13245 5.18075 5.28330 5.38168 5.45783 5.50937 5.51624 5.75689 5.99124 6.23727 6.37928 6.54046 6.77035 7.36205 8.87732 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.004275 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.996469 B = 6547.927089 C = 7007.706066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.023 3.977 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.300 1.300 6 H -0.242 1.242 7 C -0.478 4.478 8 H 0.035 0.965 9 C -0.018 4.018 10 C 0.106 3.894 11 N -0.683 5.683 12 C 0.071 3.929 13 C -0.071 4.071 14 C -0.125 4.125 15 C -0.098 4.098 16 C -0.126 4.126 17 C -0.094 4.094 18 C -0.159 4.159 19 C 0.072 3.928 20 F -0.152 7.152 21 C -0.155 4.155 22 C -0.201 4.201 23 H 0.264 0.736 24 H 0.012 0.988 25 H 0.063 0.937 26 H 0.343 0.657 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 -5.695 16.793 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.227 1.227 6 H -0.165 1.165 7 C -0.516 4.516 8 H 0.053 0.947 9 C -0.019 4.019 10 C -0.023 4.023 11 N -0.314 5.314 12 C -0.058 4.058 13 C -0.109 4.109 14 C -0.126 4.126 15 C -0.116 4.116 16 C -0.144 4.144 17 C -0.112 4.112 18 C -0.177 4.177 19 C 0.053 3.947 20 F -0.130 7.130 21 C -0.192 4.192 22 C -0.239 4.239 23 H 0.073 0.927 24 H 0.030 0.970 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.497 -5.986 16.422 22.708 hybrid contribution -0.666 1.347 -0.265 1.526 sum 13.831 -4.640 16.156 21.768 Atomic orbital electron populations 1.70041 1.08144 1.27880 1.52784 1.25756 0.95141 1.02534 0.94001 0.85933 0.79495 0.78851 0.79414 1.19364 1.22732 1.16518 1.20420 0.89038 0.92558 1.49609 0.94670 1.19299 0.92377 1.02098 0.88134 1.21477 0.97669 0.89781 0.93382 1.60334 1.13923 1.38987 1.18157 1.21842 0.98619 0.96061 0.89313 1.20391 1.00110 0.97861 0.92489 1.20012 0.92878 1.02772 0.96963 1.21271 1.01138 0.98089 0.91121 1.21593 0.94727 0.99248 0.98798 1.21409 0.94972 0.96816 0.97972 1.21436 1.01671 1.03420 0.91201 1.17966 0.91493 1.03287 0.81942 1.91462 1.83023 1.91185 1.47379 1.22687 1.01565 0.92184 1.02776 1.23048 1.01979 0.95854 1.02984 0.92682 0.96996 0.91857 0.83847 0.95673 0.92034 0.90985 0.89904 0.83980 0.82550 0.81955 0.83318 0.88577 0.90857 0.90857 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 2 C 0.02 1.32 5.47 84.66 0.46 1.78 16 3 Si 0.94 44.61 24.77 68.60 1.70 46.31 16 4 H -0.27 -12.32 7.02 99.48 0.70 -11.63 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.24 -10.64 5.96 99.48 0.59 -10.04 16 7 C -0.48 -26.84 8.91 25.60 0.23 -26.61 16 8 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 9 C -0.02 -0.83 1.05 -52.93 -0.06 -0.88 16 10 C 0.11 4.38 5.25 86.30 0.45 4.83 16 11 N -0.68 -26.14 6.45 -513.88 -3.31 -29.45 16 12 C 0.07 2.24 5.65 86.30 0.49 2.73 16 13 C -0.07 -1.94 5.36 29.85 0.16 -1.78 16 14 C -0.12 -3.00 5.14 -19.82 -0.10 -3.10 16 15 C -0.10 -1.88 9.67 22.26 0.22 -1.66 16 16 C -0.13 -1.82 10.04 22.27 0.22 -1.59 16 17 C -0.09 -1.29 10.04 22.26 0.22 -1.06 16 18 C -0.16 -2.87 10.03 22.32 0.22 -2.65 16 19 C 0.07 1.75 7.24 22.38 0.16 1.92 16 20 F -0.15 -4.30 16.66 44.97 0.75 -3.55 16 21 C -0.15 -6.37 9.96 30.62 0.30 -6.07 16 22 C -0.20 -8.35 7.60 30.62 0.23 -8.12 16 23 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 24 H 0.01 0.52 6.74 -2.39 -0.02 0.50 16 25 H 0.06 2.37 8.06 -2.38 -0.02 2.35 16 26 H 0.34 14.17 8.33 -89.70 -0.75 13.42 16 27 H 0.03 0.78 8.14 -2.38 -0.02 0.77 16 28 H 0.06 1.97 8.11 -2.39 -0.02 1.95 16 29 H 0.07 2.13 7.95 -2.38 -0.02 2.11 16 30 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 31 H 0.14 2.34 8.04 -2.91 -0.02 2.32 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.07 3.24 7.10 -2.38 -0.02 3.22 16 38 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -65.32 318.77 2.83 -62.49 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.18 Total: 24.89 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 3.22 Total: -42.26 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -3.01 Total: -87.89 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.75 Total: -3.55 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.70 Total: 46.31 kcal Total: -65.32 2.83 -62.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.940 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds