Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47031 * 2 1 4 4 N 1.46505 * 109.46875 * 240.00637 * 2 1 3 5 5 C 1.38853 * 120.00646 * 84.99893 * 4 2 1 6 6 C 1.39559 * 119.84677 * 179.97438 * 5 4 2 7 7 C 1.36339 * 120.16380 * 179.97438 * 6 5 4 8 8 C 1.40895 * 119.83328 * 359.97438 * 7 6 5 9 9 C 1.41142 * 120.15050 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00179 * 335.18844 * 9 8 7 11 11 C 1.39862 * 119.99548 * 155.19715 * 9 8 7 12 12 N 1.30901 * 120.00443 * 342.28826 * 11 9 8 13 13 Si 1.86803 * 119.99968 * 162.28586 * 11 9 8 14 14 H 1.48501 * 109.47245 * 94.65287 * 13 11 9 15 15 H 1.48503 * 109.47218 * 214.65385 * 13 11 9 16 16 H 1.48504 * 109.46956 * 334.65203 * 13 11 9 17 17 C 1.40886 * 119.68848 * 0.27755 * 8 7 6 18 18 C 1.36336 * 119.83300 * 359.43811 * 17 8 7 19 19 C 1.52992 * 109.47060 * 120.00671 * 2 1 3 20 20 H 1.09005 * 109.46935 * 180.02562 * 19 2 1 21 21 C 1.52999 * 109.47389 * 59.99772 * 19 2 1 22 22 C 1.50698 * 109.47088 * 299.99627 * 19 2 1 23 23 O 1.20827 * 120.00216 * 0.02562 * 22 19 2 24 24 O 1.34230 * 120.00109 * 179.97438 * 22 19 2 25 25 H 1.09000 * 109.47429 * 299.99627 * 1 2 3 26 26 H 1.09004 * 109.47554 * 59.99631 * 1 2 3 27 27 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99738 * 264.99791 * 4 2 1 29 29 H 1.08005 * 119.91927 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.08637 * 179.97438 * 7 6 5 31 31 H 0.97003 * 120.00170 * 180.02562 * 12 11 9 32 32 H 1.07997 * 120.07487 * 179.70336 * 17 8 7 33 33 H 1.08004 * 119.91819 * 180.27851 * 18 17 8 34 34 H 1.09001 * 109.47362 * 179.97438 * 21 19 2 35 35 H 1.08997 * 109.47067 * 299.99924 * 21 19 2 36 36 H 1.09000 * 109.46893 * 60.00425 * 21 19 2 37 37 H 0.96703 * 116.99786 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1509 0.0022 -2.3924 6 6 2.6168 -0.6588 -3.5298 7 6 2.7490 0.0150 -4.7077 8 6 2.4134 1.3817 -4.7749 9 6 2.5471 2.0855 -5.9910 10 1 3.2475 1.7436 -6.7386 11 6 1.7728 3.2259 -6.2277 12 7 0.7009 3.4498 -5.5104 13 14 2.2681 4.4297 -7.5675 14 1 1.5428 4.1013 -8.8210 15 1 1.9241 5.8109 -7.1439 16 1 3.7313 4.3340 -7.8026 17 6 1.9487 2.0437 -3.6214 18 6 1.8160 1.3558 -2.4518 19 6 2.0399 -0.7214 1.2491 20 1 3.1300 -0.7210 1.2493 21 6 1.5299 -2.1638 1.2490 22 6 1.5377 -0.0110 2.4796 23 8 0.8427 0.9711 2.3689 24 8 1.8615 -0.4700 3.6987 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6317 -1.1528 29 1 2.8734 -1.7066 -3.4768 30 1 3.1102 -0.4977 -5.5871 31 1 0.1637 4.2406 -5.6748 32 1 1.6942 3.0923 -3.6647 33 1 1.4556 1.8608 -1.5677 34 1 1.8936 -2.6779 2.1387 35 1 0.4399 -2.1638 1.2491 36 1 1.8933 -2.6776 0.3590 37 1 1.5161 0.0192 4.4580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093028861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = -72.490534 kcal Electronic energy + Delta-G solvation = -19502.761401 eV Core-core repulsion = 16437.537253 eV Total energy + Delta-G solvation = -3065.224148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67752 -38.26349 -36.71199 -35.94896 -33.74902 -32.04226 -29.66045 -29.12941 -27.95052 -25.65897 -24.52703 -22.73602 -21.26291 -20.43605 -19.00828 -18.16651 -17.18935 -16.89600 -16.32990 -15.70429 -14.95362 -14.84854 -14.45242 -13.80038 -13.63649 -13.28762 -12.83466 -12.58517 -12.30057 -12.23485 -12.11386 -11.78212 -11.70099 -11.51998 -11.20471 -11.05275 -10.95349 -10.74569 -10.60605 -10.39751 -10.27006 -9.67661 -9.25263 -9.21591 -8.53030 -7.46508 -6.62009 -6.37848 -4.01340 2.08555 2.82785 2.93763 3.12653 3.16816 3.21640 3.37163 4.07536 4.36727 4.55115 4.74390 4.80820 4.93879 5.26062 5.52345 5.55278 5.72706 5.82838 5.89133 5.93562 6.13888 6.24525 6.29191 6.40882 6.41827 6.70826 6.96290 6.97014 7.22373 7.37809 7.56720 7.71670 7.76947 7.86605 8.17969 8.30503 8.50421 8.70968 8.81761 9.08503 9.17416 10.39890 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036786 B = 0.004130 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.986380 B = 6778.041684 C = 7251.238348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.177 3.823 3 H 0.081 0.919 4 N -0.755 5.755 5 C 0.092 3.908 6 C -0.157 4.157 7 C -0.188 4.188 8 C 0.076 3.924 9 C -0.468 4.468 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.807 5.807 13 Si 0.901 3.099 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.124 4.124 18 C -0.162 4.162 19 C -0.091 4.091 20 H 0.112 0.888 21 C -0.145 4.145 22 C 0.485 3.515 23 O -0.504 6.504 24 O -0.518 6.518 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.383 0.617 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.276 0.724 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -7.160 13.930 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.070 3.930 3 H 0.099 0.901 4 N -0.391 5.391 5 C -0.005 4.005 6 C -0.179 4.179 7 C -0.209 4.209 8 C 0.073 3.927 9 C -0.499 4.499 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.434 5.434 13 Si 0.726 3.274 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.144 4.144 18 C -0.184 4.184 19 C -0.111 4.111 20 H 0.130 0.870 21 C -0.202 4.202 22 C 0.327 3.673 23 O -0.391 6.391 24 O -0.330 6.330 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.217 0.783 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.835 -6.774 13.647 15.258 hybrid contribution -0.085 0.586 -0.113 0.603 sum 0.750 -6.188 13.534 14.900 Atomic orbital electron populations 1.22575 0.96248 1.01639 1.03455 1.20299 0.93874 0.96218 0.82646 0.90146 1.43910 1.77473 1.10954 1.06769 1.17292 1.05650 0.92036 0.85473 1.19783 1.07678 0.97466 0.93019 1.20533 1.09845 0.94601 0.95878 1.17501 0.91682 0.90528 0.92997 1.19367 1.20232 1.08451 1.01847 0.90970 1.25790 0.93475 0.97964 0.96782 1.69856 1.10895 1.25501 1.37173 0.86423 0.80132 0.79757 0.81046 1.19874 1.20290 1.18676 1.20935 1.02730 0.99711 0.91065 1.20159 1.07388 0.92779 0.98067 1.21296 1.02979 0.96888 0.89892 0.87046 1.21813 1.02207 0.93078 1.03128 1.23382 0.76988 0.82391 0.84557 1.90705 1.35340 1.26120 1.86927 1.84535 1.72473 1.59088 1.16894 0.90765 0.91678 0.93161 0.78349 0.89640 0.89096 0.91332 0.86477 0.89156 0.91425 0.91491 0.90822 0.73375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.73 37.16 0.32 -2.47 16 2 C 0.18 2.67 1.73 -67.93 -0.12 2.55 16 3 H 0.08 1.39 6.41 -51.93 -0.33 1.06 16 4 N -0.75 -12.62 5.14 -52.04 -0.27 -12.89 16 5 C 0.09 1.98 6.65 -83.69 -0.56 1.42 16 6 C -0.16 -3.50 9.82 -39.77 -0.39 -3.89 16 7 C -0.19 -4.67 9.74 -39.26 -0.38 -5.05 16 8 C 0.08 2.06 5.57 -106.79 -0.59 1.47 16 9 C -0.47 -12.83 9.03 -37.87 -0.34 -13.17 16 10 H 0.07 1.91 7.90 -52.49 -0.41 1.49 16 11 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 12 N -0.81 -21.72 10.98 55.54 0.61 -21.11 16 13 Si 0.90 19.41 29.59 -169.99 -5.03 14.38 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 17 C -0.12 -3.30 8.63 -39.27 -0.34 -3.64 16 18 C -0.16 -3.83 8.74 -39.77 -0.35 -4.18 16 19 C -0.09 -1.03 2.82 -91.78 -0.26 -1.29 16 20 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 21 C -0.14 -1.36 8.60 37.16 0.32 -1.04 16 22 C 0.49 5.64 7.33 36.00 0.26 5.90 16 23 O -0.50 -7.40 14.42 -18.75 -0.27 -7.67 16 24 O -0.52 -4.41 13.33 -39.26 -0.52 -4.94 16 25 H 0.07 1.15 5.52 -51.93 -0.29 0.86 16 26 H 0.06 1.17 7.65 -51.93 -0.40 0.78 16 27 H 0.05 0.70 6.43 -51.93 -0.33 0.37 16 28 H 0.38 5.52 6.86 -40.82 -0.28 5.24 16 29 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 32 H 0.12 3.24 6.19 -52.49 -0.32 2.91 16 33 H 0.09 2.01 6.04 -52.48 -0.32 1.69 16 34 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 36 H 0.07 0.66 6.51 -51.93 -0.34 0.32 16 37 H 0.41 1.78 9.10 45.56 0.41 2.20 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -30.54 303.01 -7.19 -37.73 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -3.77 Total: 11.44 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.51 Total: -21.52 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.34 Total: -34.00 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.79 Total: -12.61 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.54 -7.19 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093028861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.759 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds