Wall clock time and date at job start Mon Mar 30 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47031 * 2 1 4 4 N 1.46505 * 109.46875 * 240.00637 * 2 1 3 5 5 C 1.38853 * 120.00646 * 84.99893 * 4 2 1 6 6 C 1.39559 * 119.84677 * 179.97438 * 5 4 2 7 7 C 1.36339 * 120.16380 * 179.97438 * 6 5 4 8 8 C 1.40895 * 119.83328 * 359.97438 * 7 6 5 9 9 C 1.41142 * 120.15050 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00179 * 335.18844 * 9 8 7 11 11 C 1.39862 * 119.99548 * 155.19715 * 9 8 7 12 12 N 1.30901 * 120.00443 * 342.28826 * 11 9 8 13 13 Si 1.86803 * 119.99968 * 162.28586 * 11 9 8 14 14 H 1.48501 * 109.47245 * 94.65287 * 13 11 9 15 15 H 1.48503 * 109.47218 * 214.65385 * 13 11 9 16 16 H 1.48504 * 109.46956 * 334.65203 * 13 11 9 17 17 C 1.40886 * 119.68848 * 0.27755 * 8 7 6 18 18 C 1.36336 * 119.83300 * 359.43811 * 17 8 7 19 19 C 1.52992 * 109.47060 * 120.00671 * 2 1 3 20 20 H 1.09005 * 109.46935 * 180.02562 * 19 2 1 21 21 C 1.52999 * 109.47389 * 59.99772 * 19 2 1 22 22 C 1.50698 * 109.47088 * 299.99627 * 19 2 1 23 23 O 1.20827 * 120.00216 * 0.02562 * 22 19 2 24 24 O 1.34230 * 120.00109 * 179.97438 * 22 19 2 25 25 H 1.09000 * 109.47429 * 299.99627 * 1 2 3 26 26 H 1.09004 * 109.47554 * 59.99631 * 1 2 3 27 27 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99738 * 264.99791 * 4 2 1 29 29 H 1.08005 * 119.91927 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.08637 * 179.97438 * 7 6 5 31 31 H 0.97003 * 120.00170 * 180.02562 * 12 11 9 32 32 H 1.07997 * 120.07487 * 179.70336 * 17 8 7 33 33 H 1.08004 * 119.91819 * 180.27851 * 18 17 8 34 34 H 1.09001 * 109.47362 * 179.97438 * 21 19 2 35 35 H 1.08997 * 109.47067 * 299.99924 * 21 19 2 36 36 H 1.09000 * 109.46893 * 60.00425 * 21 19 2 37 37 H 0.96703 * 116.99786 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1509 0.0022 -2.3924 6 6 2.6168 -0.6588 -3.5298 7 6 2.7490 0.0150 -4.7077 8 6 2.4134 1.3817 -4.7749 9 6 2.5471 2.0855 -5.9910 10 1 3.2475 1.7436 -6.7386 11 6 1.7728 3.2259 -6.2277 12 7 0.7009 3.4498 -5.5104 13 14 2.2681 4.4297 -7.5675 14 1 1.5428 4.1013 -8.8210 15 1 1.9241 5.8109 -7.1439 16 1 3.7313 4.3340 -7.8026 17 6 1.9487 2.0437 -3.6214 18 6 1.8160 1.3558 -2.4518 19 6 2.0399 -0.7214 1.2491 20 1 3.1300 -0.7210 1.2493 21 6 1.5299 -2.1638 1.2490 22 6 1.5377 -0.0110 2.4796 23 8 0.8427 0.9711 2.3689 24 8 1.8615 -0.4700 3.6987 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6317 -1.1528 29 1 2.8734 -1.7066 -3.4768 30 1 3.1102 -0.4977 -5.5871 31 1 0.1637 4.2406 -5.6748 32 1 1.6942 3.0923 -3.6647 33 1 1.4556 1.8608 -1.5677 34 1 1.8936 -2.6779 2.1387 35 1 0.4399 -2.1638 1.2491 36 1 1.8933 -2.6776 0.3590 37 1 1.5161 0.0192 4.4580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093028861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:42 Heat of formation + Delta-G solvation = -91.996416 kcal Electronic energy + Delta-G solvation = -19503.607240 eV Core-core repulsion = 16437.537253 eV Total energy + Delta-G solvation = -3066.069987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62768 -39.88439 -38.00283 -36.98777 -35.48373 -33.56338 -31.42600 -30.66792 -29.58984 -26.58777 -26.29191 -23.99021 -23.03167 -22.04203 -20.32129 -19.14307 -19.03456 -18.26708 -17.40166 -16.86373 -16.66128 -16.26460 -15.73676 -15.47909 -14.82266 -14.53623 -14.38682 -14.18959 -13.85686 -13.55269 -13.37630 -13.19680 -13.00854 -12.91261 -12.72554 -12.64869 -12.36224 -12.25886 -11.89691 -11.77805 -11.55762 -11.33160 -11.10247 -11.05209 -10.31118 -9.38515 -8.54279 -8.16447 -6.00165 1.11792 1.19382 1.20172 1.40032 1.52883 1.59552 1.97719 2.27690 2.85277 3.02122 3.51661 3.81634 3.88836 4.10489 4.35079 4.41298 4.49714 4.53473 4.62904 4.81180 4.90331 4.94464 5.01082 5.05293 5.19476 5.22616 5.29842 5.41236 5.46774 5.65979 5.71278 5.83182 5.98426 6.20521 6.39661 6.66314 6.86753 7.01245 7.09529 7.16680 7.34806 8.49178 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036786 B = 0.004130 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.986380 B = 6778.041684 C = 7251.238348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.175 3.825 3 H 0.055 0.945 4 N -0.739 5.739 5 C 0.115 3.885 6 C -0.160 4.160 7 C -0.195 4.195 8 C 0.036 3.964 9 C -0.507 4.507 10 H 0.069 0.931 11 C 0.031 3.969 12 N -0.844 5.844 13 Si 0.976 3.024 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.260 1.260 17 C -0.146 4.146 18 C -0.174 4.174 19 C -0.085 4.085 20 H 0.127 0.873 21 C -0.141 4.141 22 C 0.492 3.508 23 O -0.542 6.542 24 O -0.506 6.506 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.400 0.600 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.281 0.719 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -9.065 15.338 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.068 3.932 3 H 0.073 0.927 4 N -0.375 5.375 5 C 0.016 3.984 6 C -0.182 4.182 7 C -0.215 4.215 8 C 0.033 3.967 9 C -0.538 4.538 10 H 0.087 0.913 11 C -0.180 4.180 12 N -0.472 5.472 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.184 1.184 17 C -0.166 4.166 18 C -0.196 4.196 19 C -0.104 4.104 20 H 0.145 0.855 21 C -0.199 4.199 22 C 0.336 3.664 23 O -0.432 6.432 24 O -0.319 6.319 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.237 0.763 29 H 0.142 0.858 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.542 -8.732 15.120 17.529 hybrid contribution -0.305 1.028 -0.316 1.118 sum 1.237 -7.704 14.804 16.735 Atomic orbital electron populations 1.22484 0.96461 1.02352 1.01860 1.20294 0.93611 0.95510 0.83782 0.92706 1.43846 1.76339 1.11648 1.05690 1.17365 1.02665 0.91271 0.87075 1.20107 1.06894 0.99174 0.92067 1.20774 1.09362 0.93961 0.97376 1.17817 0.93548 0.91980 0.93330 1.19613 1.21393 1.10378 1.02408 0.91260 1.26622 0.92946 0.99244 0.99230 1.69933 1.11912 1.26286 1.39076 0.85301 0.79706 0.77257 0.78022 1.18952 1.19492 1.18373 1.20832 1.04429 0.99046 0.92292 1.20246 1.07902 0.94059 0.97417 1.21172 1.03772 0.97586 0.87901 0.85480 1.21834 1.02004 0.91414 1.04604 1.23319 0.76102 0.81565 0.85463 1.90709 1.37212 1.27779 1.87544 1.84473 1.71938 1.58872 1.16617 0.90675 0.94954 0.91250 0.76270 0.85810 0.88299 0.90875 0.88823 0.88536 0.89321 0.91821 0.90013 0.71015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 8.73 71.98 0.63 -4.57 16 2 C 0.17 5.00 1.73 44.99 0.08 5.08 16 3 H 0.05 1.89 6.41 -2.39 -0.02 1.87 16 4 N -0.74 -22.87 5.14 -318.56 -1.64 -24.51 16 5 C 0.12 4.83 6.65 38.67 0.26 5.09 16 6 C -0.16 -6.84 9.82 22.15 0.22 -6.62 16 7 C -0.19 -9.68 9.74 22.48 0.22 -9.46 16 8 C 0.04 2.03 5.57 -21.27 -0.12 1.92 16 9 C -0.51 -28.88 9.03 23.38 0.21 -28.67 16 10 H 0.07 3.81 7.90 -2.91 -0.02 3.78 16 11 C 0.03 1.68 5.13 85.22 0.44 2.12 16 12 N -0.84 -47.37 10.98 21.81 0.24 -47.13 16 13 Si 0.98 40.86 29.59 68.60 2.03 42.89 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 16 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 17 C -0.15 -8.10 8.63 22.47 0.19 -7.90 16 18 C -0.17 -8.42 8.74 22.15 0.19 -8.22 16 19 C -0.08 -1.68 2.82 -11.54 -0.03 -1.71 16 20 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 21 C -0.14 -2.07 8.60 71.98 0.62 -1.45 16 22 C 0.49 10.23 7.33 71.24 0.52 10.76 16 23 O -0.54 -15.33 14.42 21.96 0.32 -15.01 16 24 O -0.51 -6.89 13.33 -51.41 -0.69 -7.57 16 25 H 0.07 2.28 5.52 -2.39 -0.01 2.27 16 26 H 0.03 1.16 7.65 -2.39 -0.02 1.14 16 27 H 0.07 1.79 6.43 -2.39 -0.02 1.77 16 28 H 0.40 9.93 6.86 -92.71 -0.64 9.29 16 29 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 30 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 31 H 0.28 14.40 8.30 -92.71 -0.77 13.63 16 32 H 0.09 5.53 6.19 -2.91 -0.02 5.52 16 33 H 0.10 4.44 6.04 -2.91 -0.02 4.43 16 34 H 0.09 0.98 8.11 -2.39 -0.02 0.96 16 35 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 36 H 0.08 1.08 6.51 -2.39 -0.02 1.06 16 37 H 0.43 2.37 9.10 -74.06 -0.67 1.70 16 Total: -1.00 -68.97 303.01 3.49 -65.48 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.20 Total: 29.50 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 3.43 Total: -43.65 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.40 Total: -71.64 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.37 Total: -22.58 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -68.97 3.49 -65.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093028861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.517 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds