Wall clock time and date at job start Mon Mar 30 2020 07:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47309 * 2 1 4 4 C 1.46507 * 120.00134 * 89.99536 * 3 2 1 5 5 C 1.50697 * 109.47006 * 270.00373 * 4 3 2 6 6 H 1.07991 * 120.00449 * 359.72165 * 5 4 3 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 C 1.38908 * 120.00095 * 270.00180 * 3 2 1 14 14 C 1.39511 * 119.85711 * 179.97438 * 13 3 2 15 15 C 1.36328 * 120.38630 * 179.97438 * 14 13 3 16 16 C 1.40240 * 120.08200 * 0.02593 * 15 14 13 17 17 C 1.46385 * 120.14806 * 179.97438 * 16 15 14 18 18 C 1.50697 * 120.00188 * 359.97438 * 17 16 15 19 19 O 1.21357 * 119.99499 * 179.97438 * 17 16 15 20 20 C 1.40711 * 119.70288 * 359.97438 * 16 15 14 21 21 O 1.35610 * 120.18956 * 179.97438 * 20 16 15 22 22 C 1.38325 * 119.62137 * 359.72533 * 20 16 15 23 23 H 1.09001 * 109.47048 * 60.00241 * 1 2 3 24 24 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47121 * 300.00263 * 1 2 3 26 26 H 1.08993 * 109.47298 * 239.99748 * 2 1 3 27 27 H 1.09008 * 109.46760 * 120.00016 * 2 1 3 28 28 H 1.08998 * 109.47049 * 149.99802 * 4 3 2 29 29 H 1.09001 * 109.46896 * 30.00073 * 4 3 2 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 1.08005 * 119.80350 * 359.97438 * 14 13 3 32 32 H 1.08005 * 119.96000 * 180.02562 * 15 14 13 33 33 H 1.08995 * 109.46911 * 60.00436 * 18 17 16 34 34 H 1.09006 * 109.47105 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47360 * 300.00110 * 18 17 16 36 36 H 0.96689 * 114.00091 * 90.00097 * 21 20 16 37 37 H 1.07998 * 120.03984 * 180.29367 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2688 5 6 1.0066 2.7822 1.7037 6 1 0.1171 2.7287 1.0937 7 6 0.9948 3.5049 2.8780 8 7 2.0780 3.5696 3.6211 9 14 -0.5596 4.3918 3.4132 10 1 -1.3824 3.4852 4.2535 11 1 -0.1954 5.5990 4.1976 12 1 -1.3366 4.7963 2.2141 13 6 2.2499 2.0360 -1.2030 14 6 2.7144 3.3515 -1.1995 15 6 2.9458 4.0043 -2.3737 16 6 2.7168 3.3553 -3.5957 17 6 2.9642 4.0550 -4.8574 18 6 3.4654 5.4761 -4.8453 19 8 2.7656 3.4906 -5.9132 20 6 2.2482 2.0285 -3.6034 21 8 2.0230 1.3917 -4.7793 22 6 2.0236 1.3757 -2.4047 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.0644 2.7985 1.1385 29 1 2.5505 1.3452 2.0284 30 1 2.0695 4.0777 4.4474 31 1 2.8918 3.8556 -0.2609 32 1 3.3058 5.0225 -2.3630 33 1 4.4240 5.5188 -4.3283 34 1 3.5890 5.8266 -5.8700 35 1 2.7454 6.1110 -4.3289 36 1 2.7906 0.9128 -5.1206 37 1 1.6685 0.3558 -2.4028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093669273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:06 Heat of formation + Delta-G solvation = -55.308125 kcal Electronic energy + Delta-G solvation = -19786.140647 eV Core-core repulsion = 16721.661584 eV Total energy + Delta-G solvation = -3064.479063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.94835 -38.34373 -37.11799 -35.34904 -32.97203 -31.35437 -30.53152 -29.29542 -28.38130 -26.61335 -23.52839 -23.28367 -21.44518 -20.78578 -19.38097 -17.67038 -16.70521 -16.41442 -15.84406 -15.66681 -14.79235 -14.72937 -14.37937 -14.14409 -13.66371 -13.62271 -13.30026 -12.91179 -12.52317 -12.12135 -12.05499 -12.00988 -11.72762 -11.50069 -11.45651 -11.18946 -10.95729 -10.79202 -10.61121 -10.29341 -10.04280 -9.81416 -9.18132 -9.09240 -8.61691 -8.37123 -6.75837 -6.18313 -4.29619 1.27075 1.84417 2.93462 3.19184 3.26948 3.31004 3.80169 4.18718 4.30840 4.53681 4.63089 5.10313 5.16934 5.29465 5.39585 5.54505 5.64269 5.70369 5.75950 5.79483 5.83704 6.02680 6.03905 6.14117 6.21416 6.33271 6.68580 6.73601 6.78428 6.83743 6.97239 7.12578 7.16248 7.68528 7.94719 7.99159 8.01109 8.03436 8.19283 8.78080 9.37591 10.83807 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.005713 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.889634 B = 4900.137226 C = 5676.223036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.590 5.590 4 C 0.243 3.757 5 C -0.533 4.533 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.290 3.710 14 C -0.208 4.208 15 C -0.013 4.013 16 C -0.296 4.296 17 C 0.399 3.601 18 C -0.199 4.199 19 O -0.477 6.477 20 C 0.214 3.786 21 O -0.487 6.487 22 C -0.270 4.270 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.388 0.612 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -2.116 -9.219 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.290 5.290 4 C 0.124 3.876 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.177 3.823 14 C -0.230 4.230 15 C -0.032 4.032 16 C -0.300 4.300 17 C 0.280 3.720 18 C -0.256 4.256 19 O -0.355 6.355 20 C 0.168 3.832 21 O -0.297 6.297 22 C -0.294 4.294 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.245 0.755 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.561 -2.225 -9.272 9.873 hybrid contribution -0.501 0.390 0.630 0.895 sum 2.060 -1.835 -8.642 9.072 Atomic orbital electron populations 1.22216 0.96282 1.00900 1.03463 1.21382 0.94585 0.83124 1.01551 1.47383 1.64291 1.12430 1.04902 1.19470 0.97179 0.92620 0.78357 1.21519 0.97861 1.31240 1.06542 0.91924 1.24949 0.96486 0.96222 0.96247 1.69920 1.27594 1.41457 1.14209 0.86522 0.83100 0.79275 0.78778 1.20567 1.21026 1.19737 1.17968 0.87566 0.90944 0.85844 1.20676 1.08572 0.94332 0.99445 1.20716 0.93470 0.98397 0.90664 1.20312 1.17707 0.97110 0.94873 1.21986 0.73368 0.88807 0.87813 1.22228 1.03113 0.96166 1.04075 1.90513 1.42283 1.68890 1.33845 1.18289 0.90830 0.89510 0.84565 1.84673 1.39679 1.69359 1.35994 1.20777 1.16252 1.01768 0.90600 0.92899 0.92903 0.90749 0.91778 0.90832 0.94221 0.94708 0.92516 0.84123 0.85674 0.89365 0.90595 0.89319 0.75495 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.12 1.90 5.91 -4.04 -0.02 1.87 16 3 N -0.59 -11.39 2.57 -173.15 -0.44 -11.84 16 4 C 0.24 5.55 4.94 -5.19 -0.03 5.53 16 5 C -0.53 -13.46 8.92 -34.44 -0.31 -13.77 16 6 H 0.06 1.62 7.43 -52.49 -0.39 1.23 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -24.23 13.29 55.43 0.74 -23.49 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.29 5.40 6.55 -83.91 -0.55 4.85 16 14 C -0.21 -3.80 9.12 -39.80 -0.36 -4.16 16 15 C -0.01 -0.20 9.40 -39.52 -0.37 -0.57 16 16 C -0.30 -4.85 5.88 -104.93 -0.62 -5.47 16 17 C 0.40 6.17 7.20 -31.03 -0.22 5.94 16 18 C -0.20 -2.21 8.91 36.00 0.32 -1.88 16 19 O -0.48 -8.69 15.88 -16.47 -0.26 -8.95 16 20 C 0.21 3.65 6.72 -38.62 -0.26 3.39 16 21 O -0.49 -7.84 11.57 -40.48 -0.47 -8.30 16 22 C -0.27 -4.62 9.13 -39.28 -0.36 -4.98 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.37 7.27 -51.93 -0.38 0.99 16 26 H 0.06 0.90 6.15 -51.93 -0.32 0.58 16 27 H 0.07 1.15 7.89 -51.92 -0.41 0.74 16 28 H 0.04 0.95 6.16 -51.93 -0.32 0.63 16 29 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.14 2.77 6.09 -52.48 -0.32 2.45 16 32 H 0.13 1.57 7.02 -52.48 -0.37 1.21 16 33 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.39 4.54 9.06 45.56 0.41 4.96 16 37 H 0.13 1.99 6.09 -52.49 -0.32 1.67 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -29.66 312.49 -7.31 -36.97 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.06 Total: 5.58 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.50 Total: -10.03 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.29 Total: -35.33 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.73 Total: -17.26 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.66 -7.31 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093669273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.339 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds