Wall clock time and date at job start Mon Mar 30 2020 07:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47309 * 2 1 4 4 C 1.46507 * 120.00134 * 89.99536 * 3 2 1 5 5 C 1.50697 * 109.47006 * 270.00373 * 4 3 2 6 6 H 1.07991 * 120.00449 * 359.72165 * 5 4 3 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 C 1.38908 * 120.00095 * 270.00180 * 3 2 1 14 14 C 1.39511 * 119.85711 * 179.97438 * 13 3 2 15 15 C 1.36328 * 120.38630 * 179.97438 * 14 13 3 16 16 C 1.40240 * 120.08200 * 0.02593 * 15 14 13 17 17 C 1.46385 * 120.14806 * 179.97438 * 16 15 14 18 18 C 1.50697 * 120.00188 * 359.97438 * 17 16 15 19 19 O 1.21357 * 119.99499 * 179.97438 * 17 16 15 20 20 C 1.40711 * 119.70288 * 359.97438 * 16 15 14 21 21 O 1.35610 * 120.18956 * 179.97438 * 20 16 15 22 22 C 1.38325 * 119.62137 * 359.72533 * 20 16 15 23 23 H 1.09001 * 109.47048 * 60.00241 * 1 2 3 24 24 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47121 * 300.00263 * 1 2 3 26 26 H 1.08993 * 109.47298 * 239.99748 * 2 1 3 27 27 H 1.09008 * 109.46760 * 120.00016 * 2 1 3 28 28 H 1.08998 * 109.47049 * 149.99802 * 4 3 2 29 29 H 1.09001 * 109.46896 * 30.00073 * 4 3 2 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 1.08005 * 119.80350 * 359.97438 * 14 13 3 32 32 H 1.08005 * 119.96000 * 180.02562 * 15 14 13 33 33 H 1.08995 * 109.46911 * 60.00436 * 18 17 16 34 34 H 1.09006 * 109.47105 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47360 * 300.00110 * 18 17 16 36 36 H 0.96689 * 114.00091 * 90.00097 * 21 20 16 37 37 H 1.07998 * 120.03984 * 180.29367 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2688 5 6 1.0066 2.7822 1.7037 6 1 0.1171 2.7287 1.0937 7 6 0.9948 3.5049 2.8780 8 7 2.0780 3.5696 3.6211 9 14 -0.5596 4.3918 3.4132 10 1 -1.3824 3.4852 4.2535 11 1 -0.1954 5.5990 4.1976 12 1 -1.3366 4.7963 2.2141 13 6 2.2499 2.0360 -1.2030 14 6 2.7144 3.3515 -1.1995 15 6 2.9458 4.0043 -2.3737 16 6 2.7168 3.3553 -3.5957 17 6 2.9642 4.0550 -4.8574 18 6 3.4654 5.4761 -4.8453 19 8 2.7656 3.4906 -5.9132 20 6 2.2482 2.0285 -3.6034 21 8 2.0230 1.3917 -4.7793 22 6 2.0236 1.3757 -2.4047 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.0644 2.7985 1.1385 29 1 2.5505 1.3452 2.0284 30 1 2.0695 4.0777 4.4474 31 1 2.8918 3.8556 -0.2609 32 1 3.3058 5.0225 -2.3630 33 1 4.4240 5.5188 -4.3283 34 1 3.5890 5.8266 -5.8700 35 1 2.7454 6.1110 -4.3289 36 1 2.7906 0.9128 -5.1206 37 1 1.6685 0.3558 -2.4028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093669273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:06 Heat of formation + Delta-G solvation = -72.248264 kcal Electronic energy + Delta-G solvation = -19786.875226 eV Core-core repulsion = 16721.661584 eV Total energy + Delta-G solvation = -3065.213642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25993 -39.68722 -38.43564 -36.72001 -34.87546 -32.60398 -31.99627 -30.49890 -29.81096 -28.20540 -25.04029 -24.80586 -22.82299 -22.15002 -20.63740 -19.03175 -18.61320 -17.77599 -17.26618 -17.00875 -16.44915 -16.04951 -15.65787 -15.41400 -15.13065 -14.93053 -14.75443 -14.23386 -14.07571 -13.63040 -13.38422 -13.05828 -13.02430 -12.96412 -12.85535 -12.75831 -12.63147 -12.34955 -12.12755 -11.73463 -11.69931 -11.44337 -10.62376 -10.59499 -10.41229 -9.70434 -8.40793 -7.98541 -6.33671 -0.02743 0.51942 1.38188 1.40984 1.50053 1.67886 2.29907 2.45727 2.89917 3.09424 3.36099 3.42330 3.90733 4.10141 4.32018 4.38639 4.42396 4.48479 4.53602 4.69160 4.72160 4.75315 4.80443 4.95289 4.99468 5.12376 5.15736 5.19342 5.41173 5.41782 5.53233 5.58583 5.69360 5.81461 6.07074 6.38779 6.68745 6.81029 6.82324 6.89547 7.36988 8.84752 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.005713 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.889634 B = 4900.137226 C = 5676.223036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.600 5.600 4 C 0.259 3.741 5 C -0.534 4.534 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.272 3.728 14 C -0.231 4.231 15 C 0.003 3.997 16 C -0.302 4.302 17 C 0.398 3.602 18 C -0.193 4.193 19 O -0.508 6.508 20 C 0.207 3.793 21 O -0.496 6.496 22 C -0.266 4.266 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.017 0.983 30 H 0.267 0.733 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.406 0.594 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -1.640 -10.452 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.302 5.302 4 C 0.138 3.862 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.563 5.563 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.161 3.839 14 C -0.253 4.253 15 C -0.016 4.016 16 C -0.306 4.306 17 C 0.281 3.719 18 C -0.250 4.250 19 O -0.389 6.389 20 C 0.161 3.839 21 O -0.309 6.309 22 C -0.290 4.290 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.177 0.823 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.266 0.734 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.398 -1.761 -10.534 10.946 hybrid contribution -0.415 0.219 0.884 1.001 sum 1.983 -1.542 -9.650 9.972 Atomic orbital electron populations 1.22126 0.96110 1.02342 1.01411 1.21580 0.94679 0.81798 1.02925 1.47220 1.65640 1.13465 1.03915 1.19000 0.95692 0.91787 0.79674 1.21701 0.98229 1.31069 1.06296 0.92999 1.25635 0.98965 0.97027 0.96456 1.70010 1.29199 1.42432 1.14660 0.85630 0.79957 0.78325 0.78225 1.20080 1.20578 1.19842 1.18170 0.88340 0.91386 0.86020 1.20666 1.10331 0.94708 0.99599 1.20974 0.91725 0.99549 0.89337 1.20647 1.17052 0.97107 0.95790 1.22508 0.72294 0.90432 0.86638 1.22240 1.04440 0.92934 1.05356 1.90506 1.43713 1.70059 1.34628 1.18480 0.90599 0.90062 0.84789 1.84624 1.41060 1.69609 1.35565 1.20831 1.15875 1.02272 0.90008 0.93786 0.89707 0.93759 0.89204 0.90586 0.95806 0.96515 0.92430 0.86211 0.82290 0.86963 0.89791 0.87655 0.73391 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 10.24 71.98 0.74 -4.30 16 2 C 0.11 3.58 5.91 86.38 0.51 4.09 16 3 N -0.60 -23.45 2.57 -701.73 -1.80 -25.26 16 4 C 0.26 12.24 4.94 85.63 0.42 12.66 16 5 C -0.53 -27.57 8.92 25.60 0.23 -27.34 16 6 H 0.05 2.74 7.43 -2.92 -0.02 2.72 16 7 C 0.02 0.99 5.46 84.66 0.46 1.46 16 8 N -0.92 -50.89 13.29 21.45 0.28 -50.60 16 9 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.27 10.10 6.55 38.50 0.25 10.35 16 14 C -0.23 -8.40 9.12 22.13 0.20 -8.20 16 15 C 0.00 0.10 9.40 22.31 0.21 0.31 16 16 C -0.30 -9.32 5.88 -20.07 -0.12 -9.44 16 17 C 0.40 11.34 7.20 27.81 0.20 11.54 16 18 C -0.19 -3.59 8.91 71.24 0.63 -2.95 16 19 O -0.51 -17.65 15.88 17.73 0.28 -17.37 16 20 C 0.21 6.75 6.72 22.89 0.15 6.91 16 21 O -0.50 -15.17 11.57 -68.22 -0.79 -15.96 16 22 C -0.27 -8.81 9.13 22.47 0.21 -8.60 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.04 1.63 7.27 -2.39 -0.02 1.61 16 26 H 0.09 2.37 6.15 -2.39 -0.01 2.36 16 27 H 0.08 2.34 7.89 -2.38 -0.02 2.33 16 28 H 0.02 1.20 6.16 -2.39 -0.01 1.18 16 29 H 0.02 0.84 7.89 -2.39 -0.02 0.82 16 30 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.12 4.86 6.09 -2.91 -0.02 4.84 16 32 H 0.16 3.50 7.02 -2.91 -0.02 3.48 16 33 H 0.11 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.08 1.47 8.12 -2.38 -0.02 1.45 16 35 H 0.11 1.66 8.08 -2.39 -0.02 1.65 16 36 H 0.41 8.85 9.06 -74.06 -0.67 8.18 16 37 H 0.14 4.13 6.09 -2.91 -0.02 4.12 16 Total: -1.00 -64.08 312.49 4.52 -59.56 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.42 Total: 19.10 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.10 Total: -13.53 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.52 Total: -75.86 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.51 Total: -33.33 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -64.08 4.52 -59.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093669273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.686 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds