Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21347 * 120.00205 * 2 1 4 4 C 1.46390 * 119.99886 * 179.97438 * 2 1 3 5 5 C 1.40241 * 120.14694 * 359.97438 * 4 2 1 6 6 C 1.36332 * 120.07732 * 179.74170 * 5 4 2 7 7 C 1.39508 * 120.38688 * 0.25962 * 6 5 4 8 8 N 1.38912 * 119.85528 * 180.02562 * 7 6 5 9 9 C 1.46498 * 119.99941 * 174.16029 * 8 7 6 10 10 C 1.46502 * 120.00173 * 354.16995 * 8 7 6 11 11 H 1.09000 * 109.46825 * 4.68172 * 10 8 7 12 12 C 1.52991 * 109.47472 * 124.68243 * 10 8 7 13 13 C 1.50703 * 109.46889 * 244.68911 * 10 8 7 14 14 H 1.07996 * 120.00179 * 359.97438 * 13 10 8 15 15 C 1.37871 * 119.99781 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00322 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00058 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46948 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47257 * 119.99741 * 17 15 13 20 20 H 1.48497 * 109.47202 * 240.00217 * 17 15 13 21 21 C 1.38973 * 120.29342 * 359.97438 * 7 6 5 22 22 C 1.38324 * 119.91506 * 359.97438 * 21 7 6 23 23 O 1.35599 * 120.19110 * 179.97438 * 22 21 7 24 24 H 1.09005 * 109.47313 * 240.00516 * 1 2 3 25 25 H 1.09000 * 109.47081 * 359.97438 * 1 2 3 26 26 H 1.08988 * 109.47375 * 120.00007 * 1 2 3 27 27 H 1.07998 * 119.96049 * 0.02562 * 5 4 2 28 28 H 1.08003 * 119.80940 * 180.23572 * 6 5 4 29 29 H 1.09005 * 109.46926 * 90.00526 * 9 8 7 30 30 H 1.09001 * 109.47020 * 210.00250 * 9 8 7 31 31 H 1.09002 * 109.47579 * 330.00718 * 9 8 7 32 32 H 1.08999 * 109.47552 * 179.97438 * 12 10 8 33 33 H 1.09000 * 109.47822 * 300.00229 * 12 10 8 34 34 H 1.09000 * 109.47154 * 60.00130 * 12 10 8 35 35 H 0.97004 * 120.00366 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.04484 * 179.97438 * 21 7 6 37 37 H 0.96702 * 114.00298 * 90.00257 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0509 0.0000 4 6 2.2389 -1.2678 0.0006 5 6 1.5408 -2.4841 0.0017 6 6 2.2239 -3.6639 -0.0031 7 6 3.6189 -3.6717 -0.0037 8 7 4.3037 -4.8803 -0.0091 9 6 5.7629 -4.8948 -0.1388 10 6 3.5668 -6.1404 0.1146 11 1 2.4960 -5.9364 0.1164 12 6 3.9105 -7.0504 -1.0662 13 6 3.9503 -6.8222 1.4027 14 1 4.6712 -6.3630 2.0629 15 6 3.3809 -8.0321 1.7383 16 7 2.5026 -8.5911 0.9347 17 14 3.8568 -8.8777 3.3346 18 1 4.8571 -8.0491 4.0545 19 1 2.6504 -9.0471 4.1838 20 1 4.4418 -10.2091 3.0342 21 6 4.3266 -2.4757 0.0001 22 6 3.6461 -1.2714 0.0039 23 8 4.3309 -0.1011 0.0082 24 1 -0.3634 -0.5138 0.8901 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8899 27 1 0.4608 -2.4861 0.0017 28 1 1.6818 -4.5981 -0.0061 29 1 6.2161 -4.8514 0.8516 30 1 6.0739 -5.8110 -0.6408 31 1 6.0844 -4.0329 -0.7236 32 1 3.3626 -7.9881 -0.9739 33 1 3.6331 -6.5573 -1.9979 34 1 4.9812 -7.2544 -1.0680 35 1 2.1016 -9.4422 1.1710 36 1 5.4065 -2.4864 0.0001 37 1 4.5299 0.2414 -0.8740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093669513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = -46.901578 kcal Electronic energy + Delta-G solvation = -19751.027822 eV Core-core repulsion = 16686.913294 eV Total energy + Delta-G solvation = -3064.114528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97208 -38.35931 -37.16776 -35.45826 -33.19337 -31.14330 -30.01330 -29.20342 -28.22381 -25.95603 -25.31295 -22.68286 -21.81204 -20.27065 -19.36618 -17.68838 -16.84812 -16.27626 -15.74712 -15.60121 -14.78565 -14.76874 -14.32856 -14.10736 -13.86747 -13.53964 -13.44943 -12.74994 -12.49649 -12.04668 -12.03698 -11.72587 -11.69130 -11.62783 -11.34637 -11.05673 -10.93464 -10.67361 -10.48574 -10.27249 -10.15270 -9.54818 -9.20748 -8.96354 -8.59496 -8.42477 -6.72093 -6.21121 -4.32808 1.24120 1.79608 2.90393 3.16669 3.25745 3.29580 3.81872 4.14862 4.28697 4.51121 4.59937 5.06120 5.14201 5.28370 5.51628 5.54056 5.66973 5.70556 5.77153 5.95648 6.03476 6.08868 6.11903 6.23432 6.51809 6.60513 6.68229 6.78262 6.81446 6.85436 7.03562 7.22068 7.49196 7.70304 7.90351 7.98091 8.01147 8.07866 8.27944 8.73019 9.35103 10.80239 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.004969 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.619427 B = 5633.132153 C = 5981.610117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.476 6.476 4 C -0.298 4.298 5 C -0.009 4.009 6 C -0.220 4.220 7 C 0.287 3.713 8 N -0.586 5.586 9 C 0.091 3.909 10 C 0.257 3.743 11 H 0.058 0.942 12 C -0.151 4.151 13 C -0.528 4.528 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.270 4.270 22 C 0.218 3.782 23 O -0.487 6.487 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.014 0.986 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.127 0.873 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 8.752 -4.751 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.280 3.720 3 O -0.355 6.355 4 C -0.302 4.302 5 C -0.029 4.029 6 C -0.242 4.242 7 C 0.173 3.827 8 N -0.286 5.286 9 C -0.052 4.052 10 C 0.157 3.843 11 H 0.075 0.925 12 C -0.210 4.210 13 C -0.567 4.567 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.294 4.294 22 C 0.171 3.829 23 O -0.297 6.297 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.033 0.967 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.551 8.799 -4.161 9.749 hybrid contribution 0.287 -0.742 0.464 0.920 sum -0.264 8.058 -3.697 8.869 Atomic orbital electron populations 1.22227 0.95105 1.04105 1.04135 1.21977 0.90906 0.87791 0.71296 1.90513 1.72042 1.34345 1.38582 1.20308 0.93326 0.94874 1.21701 1.20698 0.99127 0.90653 0.92391 1.20660 0.92522 0.99236 1.11792 1.18033 0.91520 0.85982 0.87125 1.47395 1.05908 1.04649 1.70631 1.21574 0.81050 1.01772 1.00816 1.19134 0.92694 0.77912 0.94526 0.92460 1.22138 1.00354 1.02928 0.95551 1.21394 1.25738 1.05034 1.04490 0.92091 1.24884 0.94682 0.96844 0.97219 1.69858 1.28143 1.18235 1.36493 0.86418 0.78527 0.79294 0.83099 1.19757 1.20776 1.20852 1.20760 1.00037 0.90554 1.18031 1.18301 0.88464 0.84650 0.91446 1.84668 1.75581 1.36480 1.32976 0.89322 0.90566 0.89376 0.85618 0.84476 0.93362 0.90838 0.92676 0.88581 0.96673 0.94815 0.92559 0.85505 0.75394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 8.91 36.01 0.32 -1.81 16 2 C 0.40 6.05 7.20 -31.03 -0.22 5.83 16 3 O -0.48 -8.58 15.88 -16.46 -0.26 -8.84 16 4 C -0.30 -4.80 5.88 -104.93 -0.62 -5.42 16 5 C -0.01 -0.14 9.40 -39.52 -0.37 -0.51 16 6 C -0.22 -3.90 9.23 -39.79 -0.37 -4.27 16 7 C 0.29 5.36 6.53 -83.91 -0.55 4.81 16 8 N -0.59 -11.55 2.87 -173.36 -0.50 -12.05 16 9 C 0.09 1.54 9.49 59.85 0.57 2.11 16 10 C 0.26 5.83 2.57 -69.08 -0.18 5.65 16 11 H 0.06 1.38 5.27 -51.93 -0.27 1.10 16 12 C -0.15 -3.28 8.85 37.15 0.33 -2.95 16 13 C -0.53 -13.33 8.44 -34.44 -0.29 -13.62 16 14 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 15 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -23.23 11.32 55.43 0.63 -22.60 16 17 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.27 -4.63 9.07 -39.28 -0.36 -4.99 16 22 C 0.22 3.69 6.72 -38.62 -0.26 3.43 16 23 O -0.49 -7.80 11.57 -40.45 -0.47 -8.26 16 24 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 26 H 0.09 0.78 8.08 -51.94 -0.42 0.36 16 27 H 0.13 1.50 7.02 -52.49 -0.37 1.13 16 28 H 0.14 2.54 5.70 -52.48 -0.30 2.24 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.22 6.19 -51.93 -0.32 0.90 16 31 H 0.05 0.78 6.43 -51.93 -0.33 0.45 16 32 H 0.10 2.31 6.07 -51.93 -0.32 1.99 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.03 0.69 6.53 -51.93 -0.34 0.36 16 35 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.13 2.01 6.27 -52.49 -0.33 1.69 16 37 H 0.39 4.51 9.06 45.56 0.41 4.93 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -29.20 305.30 -6.92 -36.12 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.82 Total: 6.06 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.09 Total: -10.15 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.13 Total: -34.65 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.73 Total: -17.11 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.20 -6.92 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093669513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.782 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds