Wall clock time and date at job start Mon Mar 30 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21347 * 120.00205 * 2 1 4 4 C 1.46390 * 119.99886 * 179.97438 * 2 1 3 5 5 C 1.40241 * 120.14694 * 359.97438 * 4 2 1 6 6 C 1.36332 * 120.07732 * 179.74170 * 5 4 2 7 7 C 1.39508 * 120.38688 * 0.25962 * 6 5 4 8 8 N 1.38912 * 119.85528 * 180.02562 * 7 6 5 9 9 C 1.46498 * 119.99941 * 174.16029 * 8 7 6 10 10 C 1.46502 * 120.00173 * 354.16995 * 8 7 6 11 11 H 1.09000 * 109.46825 * 4.68172 * 10 8 7 12 12 C 1.52991 * 109.47472 * 124.68243 * 10 8 7 13 13 C 1.50703 * 109.46889 * 244.68911 * 10 8 7 14 14 H 1.07996 * 120.00179 * 359.97438 * 13 10 8 15 15 C 1.37871 * 119.99781 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00322 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00058 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46948 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47257 * 119.99741 * 17 15 13 20 20 H 1.48497 * 109.47202 * 240.00217 * 17 15 13 21 21 C 1.38973 * 120.29342 * 359.97438 * 7 6 5 22 22 C 1.38324 * 119.91506 * 359.97438 * 21 7 6 23 23 O 1.35599 * 120.19110 * 179.97438 * 22 21 7 24 24 H 1.09005 * 109.47313 * 240.00516 * 1 2 3 25 25 H 1.09000 * 109.47081 * 359.97438 * 1 2 3 26 26 H 1.08988 * 109.47375 * 120.00007 * 1 2 3 27 27 H 1.07998 * 119.96049 * 0.02562 * 5 4 2 28 28 H 1.08003 * 119.80940 * 180.23572 * 6 5 4 29 29 H 1.09005 * 109.46926 * 90.00526 * 9 8 7 30 30 H 1.09001 * 109.47020 * 210.00250 * 9 8 7 31 31 H 1.09002 * 109.47579 * 330.00718 * 9 8 7 32 32 H 1.08999 * 109.47552 * 179.97438 * 12 10 8 33 33 H 1.09000 * 109.47822 * 300.00229 * 12 10 8 34 34 H 1.09000 * 109.47154 * 60.00130 * 12 10 8 35 35 H 0.97004 * 120.00366 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.04484 * 179.97438 * 21 7 6 37 37 H 0.96702 * 114.00298 * 90.00257 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0509 0.0000 4 6 2.2389 -1.2678 0.0006 5 6 1.5408 -2.4841 0.0017 6 6 2.2239 -3.6639 -0.0031 7 6 3.6189 -3.6717 -0.0037 8 7 4.3037 -4.8803 -0.0091 9 6 5.7629 -4.8948 -0.1388 10 6 3.5668 -6.1404 0.1146 11 1 2.4960 -5.9364 0.1164 12 6 3.9105 -7.0504 -1.0662 13 6 3.9503 -6.8222 1.4027 14 1 4.6712 -6.3630 2.0629 15 6 3.3809 -8.0321 1.7383 16 7 2.5026 -8.5911 0.9347 17 14 3.8568 -8.8777 3.3346 18 1 4.8571 -8.0491 4.0545 19 1 2.6504 -9.0471 4.1838 20 1 4.4418 -10.2091 3.0342 21 6 4.3266 -2.4757 0.0001 22 6 3.6461 -1.2714 0.0039 23 8 4.3309 -0.1011 0.0082 24 1 -0.3634 -0.5138 0.8901 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8899 27 1 0.4608 -2.4861 0.0017 28 1 1.6818 -4.5981 -0.0061 29 1 6.2161 -4.8514 0.8516 30 1 6.0739 -5.8110 -0.6408 31 1 6.0844 -4.0329 -0.7236 32 1 3.3626 -7.9881 -0.9739 33 1 3.6331 -6.5573 -1.9979 34 1 4.9812 -7.2544 -1.0680 35 1 2.1016 -9.4422 1.1710 36 1 5.4065 -2.4864 0.0001 37 1 4.5299 0.2414 -0.8740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093669513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:28 Heat of formation + Delta-G solvation = -63.623295 kcal Electronic energy + Delta-G solvation = -19751.752930 eV Core-core repulsion = 16686.913294 eV Total energy + Delta-G solvation = -3064.839636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26414 -39.70152 -38.49361 -36.88227 -34.93302 -32.55959 -31.35330 -30.60777 -29.44935 -27.44770 -27.09411 -24.11781 -23.11024 -21.78733 -20.63541 -19.06094 -18.55785 -17.67437 -17.23442 -16.94886 -16.44103 -16.03418 -15.58318 -15.37602 -15.34083 -14.88232 -14.80732 -14.41273 -13.70571 -13.49494 -13.18964 -13.12917 -13.03988 -12.88971 -12.83646 -12.74526 -12.62547 -12.29886 -12.14969 -11.87586 -11.65631 -11.19013 -10.53849 -10.50483 -10.40880 -9.73022 -8.32155 -7.99112 -6.31180 -0.03608 0.49971 1.38429 1.42706 1.51613 1.67210 2.30696 2.48788 2.88518 3.11110 3.34876 3.41960 3.91404 4.20380 4.35463 4.37386 4.48786 4.61058 4.67923 4.73388 4.76224 4.76404 4.89962 4.93733 5.01131 5.07818 5.15553 5.29061 5.39290 5.52429 5.56406 5.64652 5.80054 5.89267 6.15011 6.40578 6.73468 6.81282 6.83145 6.88581 7.39774 8.86062 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.004969 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.619427 B = 5633.132153 C = 5981.610117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.398 3.602 3 O -0.509 6.509 4 C -0.303 4.303 5 C 0.008 3.992 6 C -0.239 4.239 7 C 0.267 3.733 8 N -0.600 5.600 9 C 0.092 3.908 10 C 0.263 3.737 11 H 0.041 0.959 12 C -0.139 4.139 13 C -0.539 4.539 14 H 0.047 0.953 15 C 0.026 3.974 16 N -0.910 5.910 17 Si 0.953 3.047 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.278 1.278 21 C -0.270 4.270 22 C 0.209 3.791 23 O -0.497 6.497 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.163 0.837 28 H 0.124 0.876 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.037 0.963 35 H 0.266 0.734 36 H 0.136 0.864 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 9.718 -4.805 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.281 3.719 3 O -0.390 6.390 4 C -0.307 4.307 5 C -0.011 4.011 6 C -0.261 4.261 7 C 0.156 3.844 8 N -0.302 5.302 9 C -0.051 4.051 10 C 0.161 3.839 11 H 0.058 0.942 12 C -0.198 4.198 13 C -0.578 4.578 14 H 0.066 0.934 15 C -0.174 4.174 16 N -0.548 5.548 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.203 1.203 21 C -0.293 4.293 22 C 0.162 3.838 23 O -0.310 6.310 24 H 0.125 0.875 25 H 0.101 0.899 26 H 0.131 0.869 27 H 0.181 0.819 28 H 0.142 0.858 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.154 0.846 37 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.244 9.792 -4.231 10.740 hybrid contribution 0.480 -0.905 0.460 1.123 sum -0.764 8.887 -3.772 9.685 Atomic orbital electron populations 1.22240 0.91226 1.05368 1.06100 1.22526 0.92963 0.86600 0.69798 1.90507 1.73207 1.35179 1.40108 1.20660 0.93320 0.95934 1.20791 1.20993 1.00849 0.89206 0.90099 1.20716 0.92451 0.99718 1.13236 1.18265 0.92098 0.85994 0.88045 1.47218 1.06693 1.04022 1.72218 1.21654 0.79666 1.02900 1.00878 1.18820 0.92135 0.79214 0.93702 0.94187 1.21949 1.00167 1.01678 0.95956 1.21606 1.25343 1.05359 1.05489 0.93441 1.25504 0.94789 0.97457 0.99652 1.69952 1.28794 1.18499 1.37604 0.85587 0.78040 0.78386 0.80074 1.20046 1.20624 1.20324 1.20822 1.00531 0.90185 1.17797 1.18501 0.89155 0.84785 0.91321 1.84620 1.75546 1.36112 1.34677 0.87526 0.89852 0.86877 0.81928 0.85782 0.94045 0.90978 0.90084 0.90985 0.95238 0.94391 0.92483 0.84608 0.73341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 8.91 71.24 0.63 -2.77 16 2 C 0.40 11.07 7.20 27.81 0.20 11.27 16 3 O -0.51 -17.50 15.88 17.75 0.28 -17.22 16 4 C -0.30 -9.13 5.88 -20.06 -0.12 -9.25 16 5 C 0.01 0.21 9.40 22.31 0.21 0.42 16 6 C -0.24 -8.32 9.23 22.13 0.20 -8.11 16 7 C 0.27 9.87 6.53 38.50 0.25 10.12 16 8 N -0.60 -23.66 2.87 -702.37 -2.01 -25.68 16 9 C 0.09 3.05 9.49 127.77 1.21 4.26 16 10 C 0.26 12.05 2.57 44.24 0.11 12.16 16 11 H 0.04 1.98 5.27 -2.39 -0.01 1.97 16 12 C -0.14 -6.07 8.85 71.98 0.64 -5.43 16 13 C -0.54 -27.57 8.44 25.60 0.22 -27.35 16 14 H 0.05 2.50 7.79 -2.91 -0.02 2.48 16 15 C 0.03 1.35 5.30 84.65 0.45 1.80 16 16 N -0.91 -47.95 11.32 21.45 0.24 -47.71 16 17 Si 0.95 41.42 29.54 68.60 2.03 43.44 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 C -0.27 -9.00 9.07 22.47 0.20 -8.80 16 22 C 0.21 6.79 6.72 22.90 0.15 6.94 16 23 O -0.50 -15.26 11.57 -68.10 -0.79 -16.05 16 24 H 0.11 1.56 8.08 -2.38 -0.02 1.54 16 25 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 26 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 27 H 0.16 3.26 7.02 -2.91 -0.02 3.24 16 28 H 0.12 4.64 5.70 -2.91 -0.02 4.63 16 29 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 2.37 6.19 -2.39 -0.01 2.35 16 31 H 0.08 2.21 6.43 -2.39 -0.02 2.20 16 32 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.04 1.57 6.53 -2.39 -0.02 1.55 16 35 H 0.27 13.35 8.31 -92.71 -0.77 12.57 16 36 H 0.14 4.16 6.27 -2.91 -0.02 4.14 16 37 H 0.41 8.90 9.06 -74.06 -0.67 8.23 16 Total: -1.00 -62.42 305.30 4.55 -57.87 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.43 Total: 20.06 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.37 Total: -14.72 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.77 Total: -73.38 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.51 Total: -33.27 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -62.42 4.55 -57.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093669513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.752 kcal (2) G-P(sol) polarization free energy of solvation -62.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds