Wall clock time and date at job start Mon Mar 30 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 C 1.52996 * 109.47616 * 120.00094 * 2 1 3 5 5 N 1.46502 * 109.47189 * 300.00040 * 4 2 1 6 6 C 1.38849 * 120.00282 * 179.97438 * 5 4 2 7 7 C 1.39568 * 119.84270 * 359.72097 * 6 5 4 8 8 C 1.36338 * 120.16261 * 179.71757 * 7 6 5 9 9 C 1.40887 * 119.83567 * 0.55924 * 8 7 6 10 10 C 1.41138 * 120.15888 * 179.69958 * 9 8 7 11 11 H 1.07998 * 120.00076 * 204.63105 * 10 9 8 12 12 C 1.39867 * 119.99657 * 24.62602 * 10 9 8 13 13 N 1.30899 * 120.00270 * 17.95962 * 12 10 9 14 14 Si 1.86808 * 119.99673 * 197.95959 * 12 10 9 15 15 H 1.48496 * 109.47158 * 90.00096 * 14 12 10 16 16 H 1.48503 * 109.46676 * 210.00201 * 14 12 10 17 17 H 1.48497 * 109.46895 * 330.00066 * 14 12 10 18 18 C 1.40883 * 119.68869 * 359.71798 * 9 8 7 19 19 C 1.36342 * 119.83430 * 0.02562 * 18 9 8 20 20 C 1.50704 * 109.46980 * 240.00338 * 2 1 3 21 21 O 1.20826 * 119.99779 * 240.00254 * 20 2 1 22 22 O 1.34230 * 120.00250 * 59.99472 * 20 2 1 23 23 H 1.09001 * 109.46551 * 299.99798 * 1 2 3 24 24 H 1.08999 * 109.47316 * 59.99727 * 1 2 3 25 25 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47408 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46986 * 299.99900 * 3 2 1 28 28 H 1.09000 * 109.47007 * 59.99780 * 3 2 1 29 29 H 1.08993 * 109.47856 * 179.97438 * 4 2 1 30 30 H 1.09006 * 109.46831 * 59.99465 * 4 2 1 31 31 H 0.97005 * 119.99595 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.92109 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.08642 * 180.28061 * 8 7 6 34 34 H 0.97001 * 120.00134 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.08650 * 179.97438 * 18 9 8 36 36 H 1.08002 * 119.91459 * 179.97438 * 19 18 9 37 37 H 0.96703 * 116.99655 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5518 -0.0307 2.4454 6 6 1.8869 -0.5053 3.7065 7 6 2.6843 -1.6440 3.8307 8 6 3.0220 -2.1124 5.0657 9 6 2.5543 -1.4509 6.2183 10 6 2.8945 -1.9336 7.5002 11 1 2.2607 -1.7124 8.3463 12 6 4.0524 -2.6984 7.6748 13 7 4.9928 -2.6796 6.7644 14 14 4.2570 -3.7469 9.2073 15 1 3.6992 -5.1005 8.9591 16 1 5.6997 -3.8594 9.5410 17 1 3.5348 -3.1140 10.3400 18 6 1.7450 -0.3054 6.0853 19 6 1.4195 0.1548 4.8438 20 6 2.0323 -0.7104 -1.2305 21 8 2.7269 -1.6928 -1.1197 22 8 1.7079 -0.2518 -2.4497 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -1.7489 1.2492 31 1 0.9944 0.7582 2.3564 32 1 3.0381 -2.1530 2.9463 33 1 3.6429 -2.9911 5.1604 34 1 5.7960 -3.2097 6.8856 35 1 1.3825 0.2065 6.9645 36 1 0.7988 1.0325 4.7404 37 1 2.0534 -0.7410 -3.2089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093716331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:04 Heat of formation + Delta-G solvation = -78.341798 kcal Electronic energy + Delta-G solvation = -19358.248548 eV Core-core repulsion = 16292.770671 eV Total energy + Delta-G solvation = -3065.477878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72551 -38.15653 -36.71612 -36.14287 -34.01792 -32.31813 -29.44189 -28.66087 -27.54845 -26.17078 -24.64505 -23.47678 -21.18121 -20.32903 -19.20120 -18.01337 -17.17906 -16.99025 -15.91147 -15.77234 -14.94755 -14.70391 -14.30137 -13.88130 -13.85120 -13.54755 -12.70952 -12.68806 -12.57270 -12.18131 -12.15442 -11.98198 -11.72458 -11.64605 -11.41458 -11.08398 -11.01910 -10.89191 -10.76798 -10.47192 -10.42053 -9.66847 -9.25514 -9.21100 -8.52199 -7.46555 -6.62179 -6.37852 -4.01438 2.06759 2.78359 2.93831 3.12844 3.17377 3.20548 3.37796 4.07631 4.33402 4.50346 4.63068 4.72737 4.79522 5.12606 5.43063 5.56094 5.57966 5.68144 5.82465 5.93322 5.97776 6.09132 6.11581 6.29016 6.31266 6.37470 6.93264 6.97328 7.22415 7.37968 7.55528 7.71571 7.73427 7.86396 8.18111 8.29845 8.49650 8.70097 8.81413 9.08527 9.17405 10.39893 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037447 B = 0.003966 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.535745 B = 7058.136585 C = 7550.097313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.139 4.139 4 C 0.159 3.841 5 N -0.758 5.758 6 C 0.091 3.909 7 C -0.162 4.162 8 C -0.124 4.124 9 C 0.075 3.925 10 C -0.468 4.468 11 H 0.073 0.927 12 C 0.075 3.925 13 N -0.807 5.807 14 Si 0.903 3.097 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.265 1.265 18 C -0.188 4.188 19 C -0.157 4.157 20 C 0.490 3.510 21 O -0.507 6.507 22 O -0.515 6.515 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.383 0.617 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.276 0.724 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 5.242 -14.234 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.196 4.196 4 C 0.033 3.967 5 N -0.396 5.396 6 C -0.006 4.006 7 C -0.184 4.184 8 C -0.144 4.144 9 C 0.073 3.927 10 C -0.499 4.499 11 H 0.091 0.909 12 C -0.140 4.140 13 N -0.434 5.434 14 Si 0.728 3.272 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.208 4.208 19 C -0.179 4.179 20 C 0.331 3.669 21 O -0.394 6.394 22 O -0.327 6.327 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.217 0.783 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -5.575 4.947 -13.983 15.845 hybrid contribution 0.345 -0.583 0.086 0.683 sum -5.229 4.363 -13.896 15.476 Atomic orbital electron populations 1.21846 0.91227 1.03211 1.03325 1.20691 0.98367 0.97216 0.90195 1.21850 1.01877 0.92599 1.03319 1.20800 0.98539 0.95072 0.82257 1.43789 1.60605 1.33380 1.01822 1.17284 1.02379 0.97461 0.83459 1.20139 1.03149 0.97786 0.97300 1.20944 1.02026 1.00619 0.90855 1.17503 0.91555 0.90323 0.93362 1.19382 1.06667 1.29037 0.94799 0.90922 1.25797 0.94973 0.95676 0.97595 1.69856 1.05596 1.33509 1.34433 0.86407 0.77778 0.80796 0.82202 1.19549 1.20595 1.18868 1.20529 1.06833 0.98719 0.94755 1.19776 1.05204 1.00788 0.92128 1.23315 0.76791 0.82203 0.84561 1.90755 1.35490 1.26004 1.87164 1.84520 1.72361 1.59017 1.16764 0.90544 0.91362 0.91863 0.91826 0.91366 0.90533 0.92442 0.92500 0.78276 0.89300 0.86398 0.91306 0.89063 0.89622 0.73355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.23 37.16 0.31 -1.07 16 2 C -0.06 -0.74 0.72 -155.66 -0.11 -0.85 16 3 C -0.14 -1.40 8.23 37.16 0.31 -1.10 16 4 C 0.16 2.48 3.07 -4.04 -0.01 2.47 16 5 N -0.76 -12.78 5.10 -58.50 -0.30 -13.08 16 6 C 0.09 1.97 6.67 -83.69 -0.56 1.41 16 7 C -0.16 -3.89 9.23 -39.77 -0.37 -4.25 16 8 C -0.12 -3.33 8.64 -39.26 -0.34 -3.67 16 9 C 0.08 2.06 5.57 -106.79 -0.60 1.47 16 10 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 11 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 12 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 13 N -0.81 -21.76 10.96 55.54 0.61 -21.16 16 14 Si 0.90 19.47 29.60 -169.99 -5.03 14.44 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 18 C -0.19 -4.67 9.74 -39.26 -0.38 -5.05 16 19 C -0.16 -3.49 9.82 -39.77 -0.39 -3.88 16 20 C 0.49 5.93 6.92 36.01 0.25 6.18 16 21 O -0.51 -7.92 16.74 -18.75 -0.31 -8.24 16 22 O -0.51 -4.45 13.23 -39.26 -0.52 -4.97 16 23 H 0.08 0.74 6.86 -51.93 -0.36 0.38 16 24 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.58 8.11 -51.93 -0.42 0.15 16 28 H 0.08 0.75 6.86 -51.93 -0.36 0.40 16 29 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 30 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 31 H 0.38 5.51 6.16 -40.82 -0.25 5.26 16 32 H 0.09 2.01 6.68 -52.48 -0.35 1.66 16 33 H 0.12 3.28 6.16 -52.49 -0.32 2.96 16 34 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.41 1.83 9.10 45.56 0.41 2.25 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -30.96 310.39 -7.33 -38.28 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.13 Total: 9.69 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.33 Total: -19.66 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.31 Total: -34.23 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.83 Total: -13.20 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.96 -7.33 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093716331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.057 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds