Wall clock time and date at job start Mon Mar 30 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 C 1.52996 * 109.47616 * 120.00094 * 2 1 3 5 5 N 1.46502 * 109.47189 * 300.00040 * 4 2 1 6 6 C 1.38849 * 120.00282 * 179.97438 * 5 4 2 7 7 C 1.39568 * 119.84270 * 359.72097 * 6 5 4 8 8 C 1.36338 * 120.16261 * 179.71757 * 7 6 5 9 9 C 1.40887 * 119.83567 * 0.55924 * 8 7 6 10 10 C 1.41138 * 120.15888 * 179.69958 * 9 8 7 11 11 H 1.07998 * 120.00076 * 204.63105 * 10 9 8 12 12 C 1.39867 * 119.99657 * 24.62602 * 10 9 8 13 13 N 1.30899 * 120.00270 * 17.95962 * 12 10 9 14 14 Si 1.86808 * 119.99673 * 197.95959 * 12 10 9 15 15 H 1.48496 * 109.47158 * 90.00096 * 14 12 10 16 16 H 1.48503 * 109.46676 * 210.00201 * 14 12 10 17 17 H 1.48497 * 109.46895 * 330.00066 * 14 12 10 18 18 C 1.40883 * 119.68869 * 359.71798 * 9 8 7 19 19 C 1.36342 * 119.83430 * 0.02562 * 18 9 8 20 20 C 1.50704 * 109.46980 * 240.00338 * 2 1 3 21 21 O 1.20826 * 119.99779 * 240.00254 * 20 2 1 22 22 O 1.34230 * 120.00250 * 59.99472 * 20 2 1 23 23 H 1.09001 * 109.46551 * 299.99798 * 1 2 3 24 24 H 1.08999 * 109.47316 * 59.99727 * 1 2 3 25 25 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47408 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46986 * 299.99900 * 3 2 1 28 28 H 1.09000 * 109.47007 * 59.99780 * 3 2 1 29 29 H 1.08993 * 109.47856 * 179.97438 * 4 2 1 30 30 H 1.09006 * 109.46831 * 59.99465 * 4 2 1 31 31 H 0.97005 * 119.99595 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.92109 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.08642 * 180.28061 * 8 7 6 34 34 H 0.97001 * 120.00134 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.08650 * 179.97438 * 18 9 8 36 36 H 1.08002 * 119.91459 * 179.97438 * 19 18 9 37 37 H 0.96703 * 116.99655 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5518 -0.0307 2.4454 6 6 1.8869 -0.5053 3.7065 7 6 2.6843 -1.6440 3.8307 8 6 3.0220 -2.1124 5.0657 9 6 2.5543 -1.4509 6.2183 10 6 2.8945 -1.9336 7.5002 11 1 2.2607 -1.7124 8.3463 12 6 4.0524 -2.6984 7.6748 13 7 4.9928 -2.6796 6.7644 14 14 4.2570 -3.7469 9.2073 15 1 3.6992 -5.1005 8.9591 16 1 5.6997 -3.8594 9.5410 17 1 3.5348 -3.1140 10.3400 18 6 1.7450 -0.3054 6.0853 19 6 1.4195 0.1548 4.8438 20 6 2.0323 -0.7104 -1.2305 21 8 2.7269 -1.6928 -1.1197 22 8 1.7079 -0.2518 -2.4497 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -1.7489 1.2492 31 1 0.9944 0.7582 2.3564 32 1 3.0381 -2.1530 2.9463 33 1 3.6429 -2.9911 5.1604 34 1 5.7960 -3.2097 6.8856 35 1 1.3825 0.2065 6.9645 36 1 0.7988 1.0325 4.7404 37 1 2.0534 -0.7410 -3.2089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093716331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:04 Heat of formation + Delta-G solvation = -98.004743 kcal Electronic energy + Delta-G solvation = -19359.101198 eV Core-core repulsion = 16292.770671 eV Total energy + Delta-G solvation = -3066.330527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69674 -39.82676 -37.99851 -37.11280 -35.71929 -33.97236 -31.35507 -30.45248 -28.33237 -27.57024 -26.10253 -24.81738 -22.99881 -21.98989 -20.41002 -19.14647 -18.92095 -18.35316 -17.09504 -16.86739 -16.71084 -16.22562 -15.60682 -15.47591 -14.98265 -14.61524 -14.38856 -14.28366 -13.80256 -13.79867 -13.44329 -13.15077 -13.09552 -12.84808 -12.75187 -12.59773 -12.54868 -12.28942 -12.13199 -11.93178 -11.55954 -11.43679 -11.16850 -11.07529 -10.32346 -9.40105 -8.55022 -8.18205 -6.01099 1.10749 1.12668 1.19275 1.40163 1.53021 1.59177 1.89967 2.27482 2.84691 2.97946 3.43581 3.71079 3.85696 3.86475 4.28293 4.44435 4.52392 4.59767 4.67358 4.76832 4.82787 4.83192 4.92818 5.04710 5.14681 5.23940 5.24771 5.27844 5.45847 5.54650 5.66308 5.81098 5.96857 6.19666 6.37876 6.63834 6.84454 6.94432 7.08694 7.14439 7.31912 8.48557 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037447 B = 0.003966 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.535745 B = 7058.136585 C = 7550.097313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.058 4.058 3 C -0.136 4.136 4 C 0.160 3.840 5 N -0.740 5.740 6 C 0.112 3.888 7 C -0.177 4.177 8 C -0.146 4.146 9 C 0.036 3.964 10 C -0.506 4.506 11 H 0.070 0.930 12 C 0.031 3.969 13 N -0.843 5.843 14 Si 0.977 3.023 15 H -0.266 1.266 16 H -0.271 1.271 17 H -0.258 1.258 18 C -0.193 4.193 19 C -0.157 4.157 20 C 0.497 3.503 21 O -0.552 6.552 22 O -0.499 6.499 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.402 0.598 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.281 0.719 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 6.822 -15.456 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C -0.193 4.193 4 C 0.034 3.966 5 N -0.378 5.378 6 C 0.012 3.988 7 C -0.199 4.199 8 C -0.167 4.167 9 C 0.034 3.966 10 C -0.537 4.537 11 H 0.088 0.912 12 C -0.181 4.181 13 N -0.471 5.471 14 Si 0.799 3.201 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.182 1.182 18 C -0.214 4.214 19 C -0.180 4.180 20 C 0.340 3.660 21 O -0.442 6.442 22 O -0.313 6.313 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.239 0.761 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -7.075 6.573 -15.271 18.068 hybrid contribution 0.725 -0.964 0.234 1.229 sum -6.350 5.609 -15.037 17.259 Atomic orbital electron populations 1.21865 0.89327 1.03198 1.04870 1.20592 0.99680 0.97539 0.88128 1.21870 1.01260 0.91348 1.04866 1.20738 0.97328 0.94859 0.83675 1.43688 1.59924 1.33593 1.00547 1.17372 1.00031 0.95860 0.85488 1.20231 1.04107 0.99048 0.96526 1.20836 1.03065 1.00678 0.92077 1.17823 0.93322 0.91867 0.93625 1.19626 1.07725 1.31297 0.95039 0.91155 1.26638 0.94142 0.96352 1.00961 1.69932 1.06191 1.34479 1.36542 0.85284 0.78057 0.78706 0.78078 1.19098 1.19629 1.18196 1.20782 1.06116 0.98026 0.96429 1.20105 1.05068 1.01726 0.91053 1.23316 0.75779 0.81309 0.85600 1.90756 1.37592 1.27981 1.87870 1.84455 1.71716 1.58719 1.16364 0.89880 0.88942 0.92693 0.92892 0.88901 0.89910 0.94587 0.94226 0.76128 0.88840 0.88724 0.90843 0.88113 0.85626 0.70956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.23 71.98 0.59 -1.63 16 2 C -0.06 -1.22 0.72 -52.93 -0.04 -1.25 16 3 C -0.14 -2.31 8.23 71.98 0.59 -1.72 16 4 C 0.16 4.84 3.07 86.38 0.27 5.11 16 5 N -0.74 -23.38 5.10 -339.00 -1.73 -25.11 16 6 C 0.11 4.73 6.67 38.67 0.26 4.98 16 7 C -0.18 -8.68 9.23 22.15 0.20 -8.48 16 8 C -0.15 -8.18 8.64 22.48 0.19 -7.98 16 9 C 0.04 2.06 5.57 -21.27 -0.12 1.94 16 10 C -0.51 -28.76 9.03 23.38 0.21 -28.55 16 11 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 12 C 0.03 1.66 5.13 85.23 0.44 2.09 16 13 N -0.84 -47.34 10.96 21.82 0.24 -47.10 16 14 Si 0.98 40.87 29.60 68.60 2.03 42.90 16 15 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 18 C -0.19 -9.59 9.74 22.48 0.22 -9.37 16 19 C -0.16 -6.71 9.82 22.15 0.22 -6.49 16 20 C 0.50 11.12 6.92 71.24 0.49 11.61 16 21 O -0.55 -17.06 16.74 21.96 0.37 -16.69 16 22 O -0.50 -7.03 13.23 -51.42 -0.68 -7.71 16 23 H 0.08 1.27 6.86 -2.39 -0.02 1.25 16 24 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 28 H 0.08 1.31 6.86 -2.39 -0.02 1.29 16 29 H 0.04 1.26 7.89 -2.39 -0.02 1.24 16 30 H 0.04 1.36 7.87 -2.38 -0.02 1.34 16 31 H 0.40 10.06 6.16 -92.70 -0.57 9.49 16 32 H 0.09 4.39 6.68 -2.91 -0.02 4.37 16 33 H 0.09 5.62 6.16 -2.91 -0.02 5.60 16 34 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 35 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.43 2.56 9.10 -74.06 -0.67 1.89 16 Total: -1.00 -69.87 310.39 3.61 -66.26 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.15 Total: 27.20 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 3.53 Total: -39.75 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.49 Total: -72.21 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.31 Total: -24.40 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -69.87 3.61 -66.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093716331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.740 kcal (2) G-P(sol) polarization free energy of solvation -69.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds