Wall clock time and date at job start Mon Mar 30 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47260 * 2 1 4 4 N 1.46497 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00004 * 269.64591 * 4 3 2 6 6 H 1.08001 * 120.00108 * 326.06641 * 5 4 3 7 7 C 1.38812 * 120.00010 * 146.06189 * 5 4 3 8 8 N 1.31614 * 120.00204 * 336.83065 * 7 5 4 9 9 Si 1.86798 * 119.99867 * 156.82963 * 7 5 4 10 10 H 1.48499 * 109.47119 * 60.00304 * 9 7 5 11 11 H 1.48505 * 109.47274 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47257 * 300.00116 * 9 7 5 13 13 C 1.46500 * 120.00043 * 89.92800 * 4 3 2 14 14 C 1.50697 * 109.47321 * 89.99972 * 13 4 3 15 15 C 1.38368 * 119.84484 * 269.72793 * 14 13 4 16 16 C 1.37948 * 120.14814 * 179.72323 * 15 14 13 17 17 C 1.39623 * 119.84802 * 0.56715 * 16 15 14 18 18 C 1.47734 * 120.15207 * 179.68154 * 17 16 15 19 19 O 1.21469 * 120.00120 * 180.02562 * 18 17 16 20 20 O 1.34713 * 119.99509 * 0.02562 * 18 17 16 21 21 C 1.39630 * 119.70126 * 359.70575 * 17 16 15 22 22 C 1.37943 * 119.84779 * 359.97438 * 21 17 16 23 23 H 1.08993 * 109.46936 * 300.00420 * 1 2 3 24 24 H 1.08995 * 109.47044 * 60.00369 * 1 2 3 25 25 H 1.09005 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47359 * 239.99766 * 2 1 3 27 27 H 1.09002 * 109.47066 * 120.00008 * 2 1 3 28 28 H 1.08998 * 109.47125 * 59.99624 * 3 2 1 29 29 H 1.09002 * 109.47087 * 299.99995 * 3 2 1 30 30 H 0.96998 * 120.00502 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47128 * 209.99469 * 13 4 3 32 32 H 1.08995 * 109.46905 * 329.99615 * 13 4 3 33 33 H 1.08000 * 119.93105 * 359.97205 * 15 14 13 34 34 H 1.08002 * 120.07735 * 180.27018 * 16 15 14 35 35 H 0.96705 * 116.99634 * 179.97438 * 20 18 17 36 36 H 1.08002 * 120.07532 * 179.97438 * 21 17 16 37 37 H 1.07997 * 119.92765 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4495 1.1850 6 1 3.7886 1.9768 2.0377 7 6 5.4010 0.7790 1.2909 8 7 5.6805 -0.2088 0.4673 9 14 6.6337 1.2785 2.6025 10 1 6.0185 1.1224 3.9451 11 1 7.8368 0.4133 2.5064 12 1 7.0255 2.6965 2.3993 13 6 4.2370 1.4410 -1.2697 14 6 4.4881 2.8613 -1.7064 15 6 3.5659 3.5077 -2.5103 16 6 3.7866 4.8097 -2.9090 17 6 4.9495 5.4712 -2.5094 18 6 5.1961 6.8632 -2.9384 19 8 6.2089 7.4359 -2.5895 20 8 4.2976 7.4973 -3.7165 21 6 5.8786 4.8109 -1.7029 22 6 5.6421 3.5112 -1.3059 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 6.5267 -0.6772 0.5410 31 1 5.1895 0.9273 -1.1391 32 1 3.6476 0.9263 -2.0284 33 1 2.6693 2.9932 -2.8229 34 1 3.0640 5.3146 -3.5329 35 1 4.5024 8.4074 -3.9714 36 1 6.7803 5.3167 -1.3906 37 1 6.3597 2.9994 -0.6818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094657324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:59 Heat of formation + Delta-G solvation = -59.323648 kcal Electronic energy + Delta-G solvation = -19607.851238 eV Core-core repulsion = 16543.198049 eV Total energy + Delta-G solvation = -3064.653189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15605 -38.46590 -36.13718 -35.91127 -33.06378 -31.75697 -30.54868 -30.18420 -26.53573 -25.62420 -23.43576 -22.21433 -21.81482 -20.51663 -19.85120 -17.93909 -17.24424 -16.81830 -15.46851 -15.17151 -14.73472 -14.44598 -14.31980 -14.12951 -13.80557 -13.32463 -13.08307 -12.94713 -12.61216 -12.11372 -11.88811 -11.47046 -11.41078 -11.10160 -11.02916 -10.86192 -10.72580 -10.60033 -10.37341 -10.33290 -10.02824 -10.00716 -9.74051 -8.62579 -8.53438 -8.29740 -6.76186 -5.92526 -3.42839 1.09465 1.86204 2.84353 3.18124 3.31232 3.38084 3.41357 4.22584 4.42089 5.15849 5.19150 5.34618 5.38023 5.45635 5.70704 5.72349 5.80834 5.92162 5.93825 6.08956 6.22696 6.31358 6.35319 6.47582 6.49827 6.55793 6.61615 6.64315 6.70950 6.91010 6.99705 7.18072 7.25016 7.37587 7.56653 7.71841 8.01652 8.37177 9.03845 9.67574 10.23374 11.07984 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.006492 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.336348 B = 4312.011158 C = 5657.750385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.148 3.852 4 N -0.573 5.573 5 C -0.254 4.254 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.881 5.881 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.162 3.838 14 C -0.029 4.029 15 C -0.140 4.140 16 C -0.065 4.065 17 C -0.161 4.161 18 C 0.530 3.470 19 O -0.527 6.527 20 O -0.516 6.516 21 C -0.056 4.056 22 C -0.114 4.114 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.034 0.966 30 H 0.258 0.742 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.407 0.593 36 H 0.127 0.873 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 6.975 -7.040 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.022 3.978 4 N -0.291 5.291 5 C -0.383 4.383 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.523 5.523 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.206 1.206 13 C 0.036 3.964 14 C -0.033 4.033 15 C -0.159 4.159 16 C -0.084 4.084 17 C -0.163 4.163 18 C 0.376 3.624 19 O -0.417 6.417 20 O -0.327 6.327 21 C -0.074 4.074 22 C -0.132 4.132 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.265 0.735 36 H 0.145 0.855 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.631 6.555 -6.799 10.519 hybrid contribution 0.806 0.918 0.562 1.345 sum -3.826 7.473 -6.237 10.458 Atomic orbital electron populations 1.21756 0.97707 1.00377 1.00711 1.22064 0.93074 1.00609 1.02181 1.20963 0.84754 0.93610 0.98438 1.43774 0.99516 1.84116 1.01700 1.19055 1.03086 1.25937 0.90247 0.91962 1.25053 1.00603 0.95109 0.98153 1.69959 1.23776 1.19076 1.39473 0.86543 0.81042 0.78476 0.81925 1.20624 1.21457 1.20603 1.20222 1.01344 0.88079 0.86713 1.21655 0.91333 1.00668 0.89631 1.21069 0.99999 0.94490 1.00358 1.21280 0.95248 0.94516 0.97327 1.18796 0.99383 0.90809 1.07286 1.21137 0.79735 0.87197 0.74286 1.90845 1.28254 1.67830 1.54820 1.84593 1.50546 1.32955 1.64614 1.21215 0.97660 0.94417 0.94124 1.21101 0.98426 0.93747 0.99964 0.93416 0.93647 0.93823 0.92975 0.91816 0.93894 0.94727 0.93238 0.87128 0.94311 0.86082 0.85585 0.73490 0.85526 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.14 -2.58 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 2.93 5.67 -4.04 -0.02 2.91 16 4 N -0.57 -13.15 2.43 -174.61 -0.42 -13.58 16 5 C -0.25 -6.48 9.48 -15.06 -0.14 -6.62 16 6 H 0.06 1.62 7.93 -52.49 -0.42 1.21 16 7 C 0.01 0.29 4.95 -17.43 -0.09 0.21 16 8 N -0.88 -23.54 11.34 55.49 0.63 -22.91 16 9 Si 0.89 20.57 29.61 -169.99 -5.03 15.54 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.16 3.50 5.41 -5.19 -0.03 3.48 16 14 C -0.03 -0.56 5.47 -104.53 -0.57 -1.13 16 15 C -0.14 -2.33 9.68 -39.64 -0.38 -2.71 16 16 C -0.07 -1.00 9.62 -39.17 -0.38 -1.38 16 17 C -0.16 -2.67 5.87 -104.98 -0.62 -3.28 16 18 C 0.53 8.16 8.27 34.61 0.29 8.45 16 19 O -0.53 -9.37 17.13 -19.24 -0.33 -9.70 16 20 O -0.52 -5.94 12.68 -40.53 -0.51 -6.46 16 21 C -0.06 -0.99 9.60 -39.17 -0.38 -1.37 16 22 C -0.11 -2.20 9.68 -39.64 -0.38 -2.58 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.04 0.85 8.04 -51.93 -0.42 0.44 16 29 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.11 2.70 5.28 -51.93 -0.27 2.43 16 32 H 0.04 0.79 8.01 -51.93 -0.42 0.37 16 33 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.13 1.64 7.61 -52.49 -0.40 1.24 16 35 H 0.41 2.68 9.11 45.56 0.42 3.09 16 36 H 0.13 2.15 7.65 -52.49 -0.40 1.75 16 37 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -28.77 321.22 -7.76 -36.52 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.42 Total: 4.34 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.50 Total: -8.59 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.20 Total: -36.49 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.84 Total: -16.16 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.77 -7.76 -36.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094657324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.801 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds