Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 N 1.46506 * 109.47089 * 119.99460 * 2 1 3 5 5 C 1.36934 * 119.99736 * 118.93528 * 4 2 1 6 6 H 1.08001 * 119.99538 * 218.95278 * 5 4 2 7 7 C 1.38807 * 120.00296 * 38.95391 * 5 4 2 8 8 N 1.31616 * 120.00124 * 26.47681 * 7 5 4 9 9 Si 1.86805 * 119.99889 * 206.48630 * 7 5 4 10 10 H 1.48497 * 109.47205 * 89.99885 * 9 7 5 11 11 H 1.48498 * 109.46912 * 209.99576 * 9 7 5 12 12 H 1.48497 * 109.47312 * 329.99464 * 9 7 5 13 13 C 1.46500 * 119.99976 * 298.93832 * 4 2 1 14 14 C 1.50700 * 109.47410 * 97.57940 * 13 4 2 15 15 C 1.38369 * 119.84954 * 262.38010 * 14 13 4 16 16 C 1.37943 * 120.14901 * 179.71887 * 15 14 13 17 17 C 1.39630 * 119.84600 * 0.57428 * 16 15 14 18 18 C 1.47729 * 120.15294 * 179.67772 * 17 16 15 19 19 O 1.21461 * 120.00259 * 180.02562 * 18 17 16 20 20 O 1.34718 * 119.99505 * 0.02562 * 18 17 16 21 21 C 1.39637 * 119.70359 * 359.70247 * 17 16 15 22 22 C 1.37950 * 119.84403 * 0.02562 * 21 17 16 23 23 H 1.08994 * 109.47411 * 309.34639 * 1 2 3 24 24 H 1.09006 * 109.46732 * 69.34314 * 1 2 3 25 25 H 1.09002 * 109.46865 * 189.34181 * 1 2 3 26 26 H 1.08997 * 109.47804 * 239.99854 * 2 1 3 27 27 H 1.09004 * 109.47023 * 183.07309 * 3 2 1 28 28 H 1.09004 * 109.46876 * 303.06707 * 3 2 1 29 29 H 1.09000 * 109.47508 * 63.07133 * 3 2 1 30 30 H 0.97003 * 120.00322 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47150 * 337.58134 * 13 4 2 32 32 H 1.08997 * 109.46837 * 217.58337 * 13 4 2 33 33 H 1.07996 * 119.92249 * 359.97438 * 15 14 13 34 34 H 1.07999 * 120.08089 * 180.27647 * 16 15 14 35 35 H 0.96691 * 116.99792 * 179.97438 * 20 18 17 36 36 H 1.08001 * 120.07671 * 179.97438 * 21 17 16 37 37 H 1.07995 * 119.92124 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.7875 -1.8165 1.0708 6 1 2.6497 -2.6432 1.7520 7 6 3.7443 -1.8953 0.0683 8 7 4.2876 -0.7964 -0.4107 9 14 4.2605 -3.5611 -0.6013 10 1 3.3890 -3.9258 -1.7470 11 1 5.6730 -3.4961 -1.0549 12 1 4.1300 -4.5855 0.4657 13 6 1.6837 -0.1765 2.5267 14 6 0.5037 -0.9357 3.0765 15 6 -0.7688 -0.4031 2.9687 16 6 -1.8539 -1.0955 3.4646 17 6 -1.6645 -2.3308 4.0872 18 6 -2.8210 -3.0748 4.6271 19 8 -2.6531 -4.1490 5.1686 20 8 -4.0619 -2.5617 4.5188 21 6 -0.3770 -2.8598 4.1978 22 6 0.6987 -2.1593 3.6924 23 1 -0.3634 0.6515 0.7947 24 1 -0.3633 0.3626 -0.9617 25 1 -0.3633 -1.0141 0.1668 26 1 1.8934 -0.5138 -0.8899 27 1 3.1286 1.4430 -0.0551 28 1 1.6324 1.9720 -0.8613 29 1 1.7223 1.9403 0.9162 30 1 4.9565 -0.8515 -1.1111 31 1 1.4331 0.8820 2.4548 32 1 2.5387 -0.3031 3.1907 33 1 -0.9132 0.5549 2.4915 34 1 -2.8472 -0.6808 3.3759 35 1 -4.7870 -3.0850 4.8867 36 1 -0.2235 -3.8146 4.6785 37 1 1.6950 -2.5675 3.7768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094657339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = -68.783368 kcal Electronic energy + Delta-G solvation = -19922.570415 eV Core-core repulsion = 16857.507021 eV Total energy + Delta-G solvation = -3065.063393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38104 -39.94846 -37.96246 -37.06630 -33.98977 -33.50947 -31.92365 -31.14472 -28.02859 -27.56494 -25.39466 -23.95148 -23.42334 -21.90725 -20.88273 -19.11432 -18.59510 -18.33279 -16.74316 -16.62434 -16.32769 -16.28096 -15.58424 -15.36905 -15.34710 -14.51487 -14.41152 -14.13616 -13.82957 -13.62792 -13.26082 -13.06904 -12.83588 -12.71898 -12.62794 -12.56680 -12.36135 -12.06788 -11.90086 -11.75500 -11.62687 -11.58674 -11.10273 -10.42377 -9.85634 -9.71949 -8.51283 -7.84499 -5.36479 -0.22602 0.51290 1.43746 1.48774 1.54059 1.58440 2.10323 2.51564 2.88593 3.23801 3.80957 3.87730 4.05837 4.11222 4.24059 4.42692 4.53503 4.58063 4.71971 4.80715 4.88669 4.94852 4.99429 5.11140 5.14950 5.20586 5.23364 5.34611 5.42174 5.48232 5.58198 5.69832 5.78531 5.82158 5.97561 6.01224 6.51835 6.99241 7.24167 7.91009 8.45739 9.14492 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.005805 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.753291 B = 4822.335729 C = 5571.402631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.181 3.819 3 C -0.143 4.143 4 N -0.583 5.583 5 C -0.274 4.274 6 H 0.053 0.947 7 C -0.018 4.018 8 N -0.901 5.901 9 Si 0.938 3.062 10 H -0.290 1.290 11 H -0.295 1.295 12 H -0.273 1.273 13 C 0.173 3.827 14 C -0.044 4.044 15 C -0.128 4.128 16 C -0.053 4.053 17 C -0.160 4.160 18 C 0.538 3.462 19 O -0.554 6.554 20 O -0.501 6.501 21 C -0.063 4.063 22 C -0.128 4.128 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.249 0.751 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.432 0.568 36 H 0.129 0.871 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 2.744 6.640 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.075 3.925 3 C -0.201 4.201 4 N -0.303 5.303 5 C -0.404 4.404 6 H 0.070 0.930 7 C -0.217 4.217 8 N -0.543 5.543 9 Si 0.767 3.233 10 H -0.217 1.217 11 H -0.222 1.222 12 H -0.198 1.198 13 C 0.047 3.953 14 C -0.047 4.047 15 C -0.147 4.147 16 C -0.071 4.071 17 C -0.161 4.161 18 C 0.385 3.615 19 O -0.447 6.447 20 O -0.314 6.314 21 C -0.081 4.081 22 C -0.147 4.147 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.294 0.706 36 H 0.147 0.853 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.397 2.744 6.486 15.135 hybrid contribution 0.420 -1.532 -0.368 1.630 sum -12.976 1.212 6.118 14.397 Atomic orbital electron populations 1.22365 0.96795 1.00582 1.01296 1.20201 0.91346 0.91871 0.89086 1.22021 1.01196 0.97005 0.99922 1.43914 1.57287 1.29729 0.99386 1.19101 1.12171 0.93234 1.15887 0.92967 1.25670 0.95615 0.98404 1.02053 1.70228 1.27056 1.27891 1.29086 0.85751 0.76496 0.82316 0.78726 1.21680 1.22170 1.19831 1.19930 0.92556 0.95586 0.87244 1.21318 0.97234 0.94748 0.91358 1.21302 0.91155 1.01503 1.00705 1.21588 1.00353 0.92019 0.93144 1.19064 0.90940 0.98037 1.08086 1.20886 0.83512 0.82471 0.74650 1.90850 1.86699 1.23727 1.43460 1.84516 1.16969 1.53896 1.76056 1.21236 0.91117 0.99197 0.96585 1.21044 0.98832 0.95379 0.99453 0.91445 0.92614 0.94606 0.94776 0.94121 0.93061 0.93086 0.94177 0.91164 0.94106 0.83531 0.82359 0.70592 0.85287 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 8.05 71.98 0.58 -4.56 16 2 C 0.18 7.72 2.45 44.99 0.11 7.83 16 3 C -0.14 -5.57 9.17 71.98 0.66 -4.91 16 4 N -0.58 -26.47 2.31 -682.33 -1.58 -28.05 16 5 C -0.27 -14.24 9.25 84.03 0.78 -13.46 16 6 H 0.05 2.76 7.08 -2.91 -0.02 2.74 16 7 C -0.02 -0.96 4.55 84.86 0.39 -0.57 16 8 N -0.90 -50.32 11.65 21.65 0.25 -50.07 16 9 Si 0.94 43.93 29.63 68.60 2.03 45.96 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.17 6.54 5.16 85.63 0.44 6.99 16 14 C -0.04 -1.45 5.13 -19.80 -0.10 -1.55 16 15 C -0.13 -3.49 8.22 22.23 0.18 -3.31 16 16 C -0.05 -1.31 9.62 22.54 0.22 -1.09 16 17 C -0.16 -4.51 5.87 -20.09 -0.12 -4.63 16 18 C 0.54 14.07 8.27 70.33 0.58 14.65 16 19 O -0.55 -17.74 17.13 19.96 0.34 -17.40 16 20 O -0.50 -8.78 12.68 -56.28 -0.71 -9.49 16 21 C -0.06 -1.98 9.60 22.54 0.22 -1.76 16 22 C -0.13 -4.38 9.27 22.23 0.21 -4.17 16 23 H 0.07 1.93 5.43 -2.39 -0.01 1.92 16 24 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.03 1.72 6.71 -2.39 -0.02 1.71 16 27 H 0.04 1.87 7.30 -2.38 -0.02 1.86 16 28 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 29 H 0.05 1.75 6.52 -2.39 -0.02 1.74 16 30 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.07 2.38 6.23 -2.38 -0.01 2.36 16 32 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 33 H 0.15 3.37 6.28 -2.91 -0.02 3.35 16 34 H 0.16 2.98 7.61 -2.91 -0.02 2.95 16 35 H 0.43 3.37 9.11 -74.06 -0.67 2.69 16 36 H 0.13 3.94 7.65 -2.91 -0.02 3.92 16 37 H 0.12 4.26 7.53 -2.91 -0.02 4.24 16 Total: -1.00 -63.71 307.60 4.89 -58.82 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.42 Total: 10.78 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 4.14 Total: -10.55 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -1.33 Total: -78.12 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.37 Total: -26.89 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -63.71 4.89 -58.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094657339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.968 kcal (2) G-P(sol) polarization free energy of solvation -63.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds