Wall clock time and date at job start Mon Mar 30 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47264 * 2 1 4 4 C 1.46894 * 110.99864 * 76.13103 * 3 2 1 5 5 C 1.50701 * 109.47181 * 190.44769 * 4 3 2 6 6 H 1.08000 * 119.99845 * 5.14529 * 5 4 3 7 7 C 1.37876 * 120.00216 * 185.14963 * 5 4 3 8 8 N 1.31517 * 119.99772 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99930 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47279 * 90.00413 * 9 7 5 11 11 H 1.48509 * 109.47265 * 210.00113 * 9 7 5 12 12 H 1.48498 * 109.47609 * 330.00072 * 9 7 5 13 13 C 1.38833 * 110.99778 * 200.08683 * 3 2 1 14 14 C 1.38955 * 120.17776 * 295.76616 * 13 3 2 15 15 C 1.37953 * 120.06797 * 179.72025 * 14 13 3 16 16 C 1.50692 * 119.78492 * 180.27924 * 15 14 13 17 17 C 1.38635 * 120.43007 * 0.56509 * 15 14 13 18 18 C 1.37712 * 120.36638 * 359.71602 * 17 15 14 19 19 C 1.39801 * 119.91826 * 0.02562 * 18 17 15 20 20 C 1.47293 * 120.21325 * 179.97438 * 19 18 17 21 21 O 1.21520 * 120.00149 * 180.02562 * 20 19 18 22 22 O 1.34767 * 119.99902 * 0.02562 * 20 19 18 23 23 H 1.09005 * 109.46689 * 294.77883 * 1 2 3 24 24 H 1.08998 * 109.47154 * 54.77659 * 1 2 3 25 25 H 1.08998 * 109.47438 * 174.78170 * 1 2 3 26 26 H 1.08999 * 109.46893 * 239.99874 * 2 1 3 27 27 H 1.08996 * 109.46947 * 120.00029 * 2 1 3 28 28 H 1.09000 * 109.47625 * 310.44182 * 4 3 2 29 29 H 1.09001 * 109.47185 * 70.44832 * 4 3 2 30 30 H 0.97004 * 119.99816 * 180.02562 * 8 7 5 31 31 H 1.07996 * 119.96971 * 0.02562 * 14 13 3 32 32 H 1.09007 * 109.47491 * 270.28078 * 16 15 14 33 33 H 1.09001 * 109.47329 * 30.28084 * 16 15 14 34 34 H 1.08999 * 109.47537 * 150.28115 * 16 15 14 35 35 H 1.08002 * 119.81252 * 179.69603 * 17 15 14 36 36 H 1.08001 * 120.04626 * 179.97438 * 18 17 15 37 37 H 0.96698 * 116.99616 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8853 1.9908 1.3314 5 6 2.1515 3.4712 1.2389 6 1 2.3140 3.9315 0.2754 7 6 2.1876 4.2381 2.3841 8 7 2.4194 5.5302 2.3032 9 14 1.9059 3.4423 4.0503 10 1 3.2056 2.9911 4.6095 11 1 1.2864 4.4285 4.9717 12 1 1.0019 2.2745 3.8948 13 6 3.3332 1.4482 -0.4452 14 6 4.3475 0.8380 0.2826 15 6 5.6511 0.8973 -0.1648 16 6 6.7452 0.2279 0.6261 17 6 5.9620 1.5738 -1.3343 18 6 4.9716 2.1898 -2.0665 19 6 3.6448 2.1345 -1.6297 20 6 2.5804 2.7916 -2.4075 21 8 1.4284 2.7415 -2.0240 22 8 2.8842 3.4484 -3.5444 23 1 -0.3633 0.4307 0.9331 24 1 -0.3633 0.5927 -0.8395 25 1 -0.3634 -1.0234 -0.0935 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8747 1.8262 1.7052 29 1 2.6035 1.5344 2.0125 30 1 2.4452 6.0697 3.1089 31 1 4.1145 0.3125 1.1969 32 1 7.1496 0.9311 1.3543 33 1 6.3391 -0.6399 1.1459 34 1 7.5386 -0.0918 -0.0495 35 1 6.9867 1.6181 -1.6728 36 1 5.2197 2.7158 -2.9766 37 1 2.1520 3.8634 -4.0206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094917517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:04 Heat of formation + Delta-G solvation = -51.210144 kcal Electronic energy + Delta-G solvation = -20530.553091 eV Core-core repulsion = 17466.251730 eV Total energy + Delta-G solvation = -3064.301361 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07079 -38.59619 -36.64095 -35.20966 -32.57792 -32.47681 -30.89404 -29.08266 -27.40549 -26.75879 -22.91821 -22.55854 -22.33684 -20.49912 -19.45134 -17.48488 -16.86589 -16.65376 -15.52428 -15.24076 -14.89789 -14.45804 -14.08884 -13.91080 -13.76447 -13.54155 -13.36213 -12.58222 -12.39541 -12.23392 -12.03683 -11.85014 -11.52648 -11.41746 -11.33301 -10.92712 -10.83537 -10.74933 -10.62392 -10.16641 -9.85052 -9.72786 -9.26612 -8.54899 -8.43864 -8.16235 -7.46698 -6.01039 -3.97064 1.22173 1.75121 3.22856 3.27363 3.35512 3.36876 3.64756 4.22928 4.43184 4.53436 5.05435 5.11986 5.30157 5.40807 5.45754 5.50862 5.71460 5.72474 5.83059 5.89425 5.92129 6.00008 6.05508 6.21735 6.33896 6.43103 6.55030 6.68288 6.73539 6.80535 6.84768 7.01437 7.12112 7.17050 7.60895 7.83743 8.21864 8.66616 8.67952 9.11925 9.60099 11.12565 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.008895 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.280791 B = 3147.247834 C = 3520.624242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.060 3.940 3 N -0.489 5.489 4 C 0.169 3.831 5 C -0.501 4.501 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.871 3.129 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.208 3.792 14 C -0.165 4.165 15 C -0.048 4.048 16 C -0.116 4.116 17 C -0.153 4.153 18 C -0.059 4.059 19 C -0.113 4.113 20 C 0.514 3.486 21 O -0.458 6.458 22 O -0.531 6.531 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.036 0.964 29 H -0.012 1.012 30 H 0.262 0.738 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 -11.048 -7.385 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 N -0.209 5.209 4 C 0.045 3.955 5 C -0.539 4.539 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.698 3.302 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.112 3.888 14 C -0.185 4.185 15 C -0.049 4.049 16 C -0.172 4.172 17 C -0.171 4.171 18 C -0.077 4.077 19 C -0.115 4.115 20 C 0.356 3.644 21 O -0.342 6.342 22 O -0.343 6.343 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.005 0.995 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.240 -10.826 -7.236 14.036 hybrid contribution -0.109 -0.238 1.363 1.387 sum 5.132 -11.064 -5.873 13.536 Atomic orbital electron populations 1.21716 0.94837 1.00184 1.03157 1.22009 0.96569 0.88628 0.99439 1.59459 1.15504 1.16096 1.29887 1.20316 0.96264 0.96181 0.82726 1.20986 1.47521 0.89964 0.95423 0.90168 1.24869 0.95055 0.94748 0.98569 1.69895 1.50106 1.05140 1.28681 0.86932 0.78744 0.79616 0.84888 1.20377 1.21102 1.19222 1.18620 0.89705 0.90069 0.90370 1.21529 0.92849 1.03443 1.00659 1.19937 0.94320 0.95954 0.94676 1.20839 0.96641 1.00148 0.99617 1.20812 0.99054 1.01131 0.96071 1.21288 0.91321 0.96138 0.98998 1.18967 0.92043 1.03732 0.96745 1.20618 0.88592 0.76735 0.78471 1.90972 1.20939 1.55553 1.66760 1.84554 1.45126 1.66745 1.37919 0.92613 0.91375 0.93341 0.92115 0.95371 0.94626 0.99455 0.92764 0.85939 0.90818 0.91677 0.91561 0.85924 0.84912 0.73873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.95 37.16 0.37 -1.99 16 2 C 0.06 1.08 5.27 -3.82 -0.02 1.06 16 3 N -0.49 -10.74 2.34 -172.26 -0.40 -11.15 16 4 C 0.17 4.21 3.47 -4.98 -0.02 4.19 16 5 C -0.50 -14.70 9.24 -34.44 -0.32 -15.02 16 6 H 0.08 2.63 7.98 -52.49 -0.42 2.21 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 9 Si 0.87 21.82 27.37 -169.99 -4.65 17.17 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.42 6.69 56.52 0.38 -6.04 16 13 C 0.21 4.30 3.84 -83.61 -0.32 3.98 16 14 C -0.16 -3.00 8.29 -39.42 -0.33 -3.33 16 15 C -0.05 -0.74 5.88 -104.58 -0.62 -1.36 16 16 C -0.12 -1.35 10.00 36.00 0.36 -0.99 16 17 C -0.15 -2.24 9.67 -39.63 -0.38 -2.63 16 18 C -0.06 -0.96 9.61 -39.19 -0.38 -1.33 16 19 C -0.11 -2.22 5.89 -104.82 -0.62 -2.84 16 20 C 0.51 10.30 8.26 34.41 0.28 10.59 16 21 O -0.46 -10.62 15.81 -19.28 -0.30 -10.93 16 22 O -0.53 -8.28 12.68 -40.68 -0.52 -8.80 16 23 H 0.05 0.98 6.97 -51.93 -0.36 0.62 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 27 H 0.03 0.48 7.95 -51.93 -0.41 0.06 16 28 H 0.04 0.90 6.14 -51.93 -0.32 0.58 16 29 H -0.01 -0.29 6.03 -51.93 -0.31 -0.61 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.12 2.15 7.35 -52.49 -0.39 1.76 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.86 7.61 -52.49 -0.40 1.46 16 37 H 0.40 4.48 9.11 45.56 0.42 4.90 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -34.63 311.93 -6.78 -41.40 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.30 Total: 2.74 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.08 Total: -7.74 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.37 Total: -38.55 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.82 Total: -19.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.65 Total: 17.17 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.63 -6.78 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094917517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.808 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds