Wall clock time and date at job start Mon Mar 30 2020 07:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47264 * 2 1 4 4 C 1.46894 * 110.99864 * 76.13103 * 3 2 1 5 5 C 1.50701 * 109.47181 * 190.44769 * 4 3 2 6 6 H 1.08000 * 119.99845 * 5.14529 * 5 4 3 7 7 C 1.37876 * 120.00216 * 185.14963 * 5 4 3 8 8 N 1.31517 * 119.99772 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99930 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47279 * 90.00413 * 9 7 5 11 11 H 1.48509 * 109.47265 * 210.00113 * 9 7 5 12 12 H 1.48498 * 109.47609 * 330.00072 * 9 7 5 13 13 C 1.38833 * 110.99778 * 200.08683 * 3 2 1 14 14 C 1.38955 * 120.17776 * 295.76616 * 13 3 2 15 15 C 1.37953 * 120.06797 * 179.72025 * 14 13 3 16 16 C 1.50692 * 119.78492 * 180.27924 * 15 14 13 17 17 C 1.38635 * 120.43007 * 0.56509 * 15 14 13 18 18 C 1.37712 * 120.36638 * 359.71602 * 17 15 14 19 19 C 1.39801 * 119.91826 * 0.02562 * 18 17 15 20 20 C 1.47293 * 120.21325 * 179.97438 * 19 18 17 21 21 O 1.21520 * 120.00149 * 180.02562 * 20 19 18 22 22 O 1.34767 * 119.99902 * 0.02562 * 20 19 18 23 23 H 1.09005 * 109.46689 * 294.77883 * 1 2 3 24 24 H 1.08998 * 109.47154 * 54.77659 * 1 2 3 25 25 H 1.08998 * 109.47438 * 174.78170 * 1 2 3 26 26 H 1.08999 * 109.46893 * 239.99874 * 2 1 3 27 27 H 1.08996 * 109.46947 * 120.00029 * 2 1 3 28 28 H 1.09000 * 109.47625 * 310.44182 * 4 3 2 29 29 H 1.09001 * 109.47185 * 70.44832 * 4 3 2 30 30 H 0.97004 * 119.99816 * 180.02562 * 8 7 5 31 31 H 1.07996 * 119.96971 * 0.02562 * 14 13 3 32 32 H 1.09007 * 109.47491 * 270.28078 * 16 15 14 33 33 H 1.09001 * 109.47329 * 30.28084 * 16 15 14 34 34 H 1.08999 * 109.47537 * 150.28115 * 16 15 14 35 35 H 1.08002 * 119.81252 * 179.69603 * 17 15 14 36 36 H 1.08001 * 120.04626 * 179.97438 * 18 17 15 37 37 H 0.96698 * 116.99616 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8853 1.9908 1.3314 5 6 2.1515 3.4712 1.2389 6 1 2.3140 3.9315 0.2754 7 6 2.1876 4.2381 2.3841 8 7 2.4194 5.5302 2.3032 9 14 1.9059 3.4423 4.0503 10 1 3.2056 2.9911 4.6095 11 1 1.2864 4.4285 4.9717 12 1 1.0019 2.2745 3.8948 13 6 3.3332 1.4482 -0.4452 14 6 4.3475 0.8380 0.2826 15 6 5.6511 0.8973 -0.1648 16 6 6.7452 0.2279 0.6261 17 6 5.9620 1.5738 -1.3343 18 6 4.9716 2.1898 -2.0665 19 6 3.6448 2.1345 -1.6297 20 6 2.5804 2.7916 -2.4075 21 8 1.4284 2.7415 -2.0240 22 8 2.8842 3.4484 -3.5444 23 1 -0.3633 0.4307 0.9331 24 1 -0.3633 0.5927 -0.8395 25 1 -0.3634 -1.0234 -0.0935 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8747 1.8262 1.7052 29 1 2.6035 1.5344 2.0125 30 1 2.4452 6.0697 3.1089 31 1 4.1145 0.3125 1.1969 32 1 7.1496 0.9311 1.3543 33 1 6.3391 -0.6399 1.1459 34 1 7.5386 -0.0918 -0.0495 35 1 6.9867 1.6181 -1.6728 36 1 5.2197 2.7158 -2.9766 37 1 2.1520 3.8634 -4.0206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094917517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:03 Heat of formation + Delta-G solvation = -74.421893 kcal Electronic energy + Delta-G solvation = -20531.559628 eV Core-core repulsion = 17466.251730 eV Total energy + Delta-G solvation = -3065.307898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50381 -40.05394 -38.08554 -36.69415 -34.74110 -33.73806 -32.28291 -30.86183 -28.58244 -28.43557 -24.57073 -24.03875 -23.80710 -21.95260 -20.92014 -19.02192 -18.87455 -18.14181 -17.10660 -16.75423 -16.37677 -16.06545 -15.74849 -15.33832 -15.14977 -14.94198 -14.56409 -14.42575 -13.97743 -13.81574 -13.29337 -13.05895 -12.96452 -12.83053 -12.70905 -12.56712 -12.39592 -12.22342 -12.15685 -11.83289 -11.69292 -11.47454 -11.30789 -10.78994 -9.75641 -9.50349 -9.05422 -8.27673 -6.29674 -0.14391 0.43071 1.29539 1.32860 1.43384 1.79002 2.30254 2.32448 2.85008 3.03936 3.06499 3.89399 3.96218 4.10430 4.22440 4.30170 4.38893 4.54581 4.58016 4.63250 4.74508 4.79348 4.86267 4.88406 4.95255 5.02124 5.09747 5.25217 5.30373 5.36520 5.47487 5.57441 5.62665 5.78816 5.91386 5.97873 6.57180 6.65851 6.77911 7.26421 7.32240 8.89801 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.008895 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.280791 B = 3147.247834 C = 3520.624242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 N -0.506 5.506 4 C 0.183 3.817 5 C -0.504 4.504 6 H 0.029 0.971 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.944 3.056 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.250 1.250 13 C 0.176 3.824 14 C -0.182 4.182 15 C -0.043 4.043 16 C -0.114 4.114 17 C -0.145 4.145 18 C -0.057 4.057 19 C -0.150 4.150 20 C 0.513 3.487 21 O -0.505 6.505 22 O -0.516 6.516 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.031 0.969 29 H -0.004 1.004 30 H 0.265 0.735 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 -13.238 -6.794 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 N -0.228 5.228 4 C 0.058 3.942 5 C -0.542 4.542 6 H 0.047 0.953 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.767 3.233 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.174 1.174 13 C 0.080 3.920 14 C -0.202 4.202 15 C -0.044 4.044 16 C -0.170 4.170 17 C -0.163 4.163 18 C -0.075 4.075 19 C -0.153 4.153 20 C 0.357 3.643 21 O -0.393 6.393 22 O -0.331 6.331 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.013 0.987 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 7.172 -13.030 -6.691 16.309 hybrid contribution -0.611 0.485 0.994 1.263 sum 6.561 -12.545 -5.697 15.260 Atomic orbital electron populations 1.21683 0.94203 1.01961 1.01441 1.22126 0.97070 0.86931 1.00621 1.59262 1.17289 1.18323 1.27877 1.19997 0.95782 0.93549 0.84920 1.21136 1.47135 0.92510 0.93438 0.95267 1.25824 0.94680 0.95198 1.03244 1.70065 1.51814 1.07021 1.30096 0.85766 0.79573 0.79053 0.78911 1.18752 1.20716 1.17366 1.18870 0.89667 0.91839 0.91578 1.21654 0.93745 1.03995 1.00854 1.20437 0.94211 0.94863 0.94872 1.20927 0.96035 1.00173 0.99866 1.21317 1.00557 0.99265 0.95150 1.21606 0.90226 0.95889 0.99827 1.19267 0.93483 1.05016 0.97484 1.20922 0.88253 0.76258 0.78892 1.90936 1.22642 1.57591 1.68123 1.84494 1.45895 1.66071 1.36602 0.93897 0.93561 0.89624 0.90914 0.93925 0.95135 0.98688 0.92571 0.85727 0.90501 0.90699 0.88582 0.81728 0.82809 0.71685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.95 71.98 0.72 -3.76 16 2 C 0.06 2.07 5.27 86.30 0.45 2.53 16 3 N -0.51 -22.74 2.34 -698.89 -1.64 -24.38 16 4 C 0.18 9.21 3.47 85.56 0.30 9.51 16 5 C -0.50 -30.69 9.24 25.60 0.24 -30.45 16 6 H 0.03 2.03 7.98 -2.91 -0.02 2.01 16 7 C 0.01 0.44 5.47 84.65 0.46 0.90 16 8 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 9 Si 0.94 45.14 27.37 68.60 1.88 47.02 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.25 -11.15 6.69 99.48 0.67 -10.49 16 13 C 0.18 7.34 3.84 38.73 0.15 7.49 16 14 C -0.18 -6.47 8.29 22.37 0.19 -6.28 16 15 C -0.04 -1.22 5.88 -19.84 -0.12 -1.33 16 16 C -0.11 -2.20 10.00 71.23 0.71 -1.49 16 17 C -0.15 -3.81 9.67 22.24 0.21 -3.60 16 18 C -0.06 -1.78 9.61 22.52 0.22 -1.56 16 19 C -0.15 -6.02 5.89 -19.99 -0.12 -6.14 16 20 C 0.51 21.36 8.26 70.20 0.58 21.94 16 21 O -0.51 -24.80 15.81 19.77 0.31 -24.49 16 22 O -0.52 -16.27 12.68 -56.78 -0.72 -16.99 16 23 H 0.04 1.50 6.97 -2.38 -0.02 1.48 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 2.37 7.91 -2.39 -0.02 2.35 16 27 H 0.04 1.38 7.95 -2.39 -0.02 1.36 16 28 H 0.03 1.55 6.14 -2.39 -0.01 1.54 16 29 H 0.00 -0.21 6.03 -2.39 -0.01 -0.23 16 30 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.12 4.22 7.35 -2.91 -0.02 4.20 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.10 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.15 3.99 7.61 -2.91 -0.02 3.97 16 37 H 0.42 9.49 9.11 -74.06 -0.67 8.81 16 Total: -1.00 -79.31 311.93 4.49 -74.82 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.36 Total: 17.34 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 3.99 Total: -12.26 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.34 Total: -85.44 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.41 Total: -41.48 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -79.31 4.49 -74.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094917517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.395 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds