Wall clock time and date at job start Mon Mar 30 2020 07:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46912 * 2 1 4 4 C 1.34889 * 116.99931 * 179.97438 * 3 2 1 5 5 O 1.21621 * 120.00087 * 0.02562 * 4 3 2 6 6 C 1.46488 * 120.00048 * 180.02562 * 4 3 2 7 7 C 1.37997 * 126.26684 * 180.02562 * 6 4 3 8 8 C 1.39792 * 106.97295 * 179.97438 * 7 6 4 9 9 C 1.35493 * 107.84216 * 359.77613 * 8 7 6 10 10 N 1.34959 * 108.98221 * 0.36890 * 9 8 7 11 11 C 1.46501 * 125.63377 * 179.89388 * 10 9 8 12 12 C 1.53002 * 109.46752 * 267.38085 * 11 10 9 13 13 C 1.50702 * 115.54648 * 174.52110 * 12 11 10 14 14 H 1.08003 * 120.00064 * 215.45160 * 13 12 11 15 15 C 1.37880 * 120.00197 * 35.45360 * 13 12 11 16 16 N 1.31510 * 119.99644 * 6.39631 * 15 13 12 17 17 Si 1.86797 * 119.99915 * 186.39412 * 15 13 12 18 18 H 1.48496 * 109.47236 * 270.00092 * 17 15 13 19 19 H 1.48504 * 109.47298 * 30.00275 * 17 15 13 20 20 H 1.48502 * 109.46923 * 150.00019 * 17 15 13 21 21 C 1.52997 * 117.50230 * 320.19045 * 12 11 10 22 22 C 1.52995 * 117.50044 * 28.85190 * 12 11 10 23 23 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47533 * 299.99951 * 1 2 3 25 25 H 1.09002 * 109.47029 * 60.00237 * 1 2 3 26 26 H 1.08997 * 109.47430 * 240.00521 * 2 1 3 27 27 H 1.09002 * 109.47029 * 119.99762 * 2 1 3 28 28 H 1.08001 * 126.51040 * 359.94301 * 7 6 4 29 29 H 1.07995 * 126.08215 * 179.97438 * 8 7 6 30 30 H 1.08002 * 125.50835 * 180.26222 * 9 8 7 31 31 H 1.08995 * 109.47291 * 147.38445 * 11 10 9 32 32 H 1.08996 * 109.47324 * 27.38040 * 11 10 9 33 33 H 0.97008 * 119.99646 * 175.02366 * 16 15 13 34 34 H 1.08993 * 117.50174 * 215.00799 * 21 12 11 35 35 H 1.09004 * 117.49336 * 0.02562 * 21 12 11 36 36 H 1.08997 * 117.50095 * 359.97438 * 22 12 11 37 37 H 1.09008 * 117.49840 * 144.97214 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0921 0.5813 0.0005 6 6 3.9111 2.8995 0.0011 7 6 5.2513 3.2285 0.0012 8 6 5.3287 4.6243 0.0013 9 6 4.0640 5.1103 -0.0038 10 7 3.1964 4.0765 0.0012 11 6 1.7357 4.1881 0.0003 12 6 1.2219 4.1684 1.4413 13 6 -0.2572 4.4048 1.6072 14 1 -0.6236 4.9552 2.4612 15 6 -1.1427 3.9186 0.6688 16 7 -0.7118 3.1430 -0.3019 17 14 -2.9542 4.3615 0.7763 18 1 -3.6623 3.3522 1.6038 19 1 -3.0999 5.7021 1.3984 20 1 -3.5404 4.3826 -0.5880 21 6 1.8973 3.2047 2.4191 22 6 2.1504 4.7103 2.5298 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0823 2.5388 0.0017 29 1 6.2354 5.2110 0.0017 30 1 3.7937 6.1559 -0.0091 31 1 1.3076 3.3499 -0.5495 32 1 1.4430 5.1232 -0.4771 33 1 -1.3437 2.7424 -0.9194 34 1 1.2719 2.7417 3.1823 35 1 2.7080 2.5850 2.0358 36 1 3.1275 5.0804 2.2195 37 1 1.6915 5.2382 3.3659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098056912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:54 Heat of formation + Delta-G solvation = -9.391685 kcal Electronic energy + Delta-G solvation = -21107.524029 eV Core-core repulsion = 18045.036052 eV Total energy + Delta-G solvation = -3062.487977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03549 -39.18807 -36.59590 -35.75457 -32.34412 -31.46416 -31.00562 -28.91030 -26.32691 -25.11392 -23.58946 -21.68428 -21.28394 -19.98181 -19.66991 -18.83453 -17.03266 -16.54626 -16.20706 -15.89753 -14.84172 -14.61142 -14.59714 -13.41471 -13.22241 -13.16004 -12.81175 -12.42619 -12.13122 -12.02953 -11.86902 -11.71745 -11.50404 -11.19169 -11.07259 -10.88903 -10.72471 -10.54579 -10.28679 -10.03505 -9.85834 -9.68641 -9.16557 -8.89432 -8.21973 -8.03567 -7.72359 -6.17926 -4.23808 1.87891 3.16455 3.22030 3.25292 3.28924 3.30140 3.66619 3.76101 4.24145 4.87322 5.33876 5.45526 5.52247 5.56404 5.60631 5.71868 5.80466 5.89444 6.01248 6.18477 6.21146 6.35354 6.51175 6.54540 6.56254 6.65505 6.71584 6.79719 6.93962 7.07442 7.12797 7.26665 7.30793 7.36567 7.66146 7.81893 7.89940 8.26281 8.44752 8.71834 9.36021 10.81339 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.009310 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.808121 B = 3006.943774 C = 3964.941659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 O -0.311 6.311 4 C 0.535 3.465 5 O -0.529 6.529 6 C -0.044 4.044 7 C -0.121 4.121 8 C -0.229 4.229 9 C 0.025 3.975 10 N -0.389 5.389 11 C 0.121 3.879 12 C 0.050 3.950 13 C -0.487 4.487 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.870 5.870 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.285 1.285 21 C -0.193 4.193 22 C -0.217 4.217 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.074 0.926 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -0.593 -1.482 4.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.002 4.002 3 O -0.226 6.226 4 C 0.382 3.618 5 O -0.421 6.421 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.253 4.253 9 C -0.115 4.115 10 N -0.060 5.060 11 C 0.002 3.998 12 C 0.049 3.951 13 C -0.524 4.524 14 H 0.081 0.919 15 C -0.131 4.131 16 N -0.507 5.507 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.210 1.210 21 C -0.231 4.231 22 C -0.255 4.255 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.725 -0.979 -1.706 4.212 hybrid contribution -0.846 0.098 0.274 0.894 sum 2.879 -0.882 -1.432 3.334 Atomic orbital electron populations 1.21677 0.92131 1.00600 1.05380 1.22864 0.95989 0.80512 1.00795 1.87005 1.21639 1.30964 1.82993 1.19939 0.81455 0.87980 0.72407 1.90805 1.61139 1.41324 1.48832 1.19386 0.91241 0.84064 1.20909 1.21119 0.93248 0.95570 1.04790 1.20675 0.96405 0.94009 1.14167 1.21900 0.89562 0.93568 1.06480 1.44906 1.08964 1.04258 1.47890 1.22562 0.70700 1.06373 1.00117 1.19160 0.92725 0.97304 0.85863 1.20456 0.88130 1.35737 1.08118 0.91874 1.24970 0.98907 0.94441 0.94831 1.69716 1.33991 1.30254 1.16772 0.86509 0.84629 0.79077 0.77381 1.20646 1.19900 1.21048 1.22953 1.03198 0.91057 1.05893 1.23054 1.00896 0.97297 1.04210 0.92250 0.90682 0.90774 0.92534 0.92434 0.84263 0.84619 0.82054 0.82490 0.90807 0.92531 0.90805 0.91746 0.90912 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.23 37.16 0.38 -1.97 16 2 C 0.07 1.29 6.20 37.16 0.23 1.52 16 3 O -0.31 -6.53 6.76 -41.01 -0.28 -6.81 16 4 C 0.54 11.41 6.59 34.05 0.22 11.64 16 5 O -0.53 -11.72 16.68 -19.36 -0.32 -12.04 16 6 C -0.04 -0.89 5.52 -81.99 -0.45 -1.35 16 7 C -0.12 -2.20 10.66 -39.09 -0.42 -2.61 16 8 C -0.23 -3.69 10.81 -39.98 -0.43 -4.12 16 9 C 0.02 0.43 9.59 -17.16 -0.16 0.26 16 10 N -0.39 -7.73 1.90 -113.04 -0.21 -7.94 16 11 C 0.12 2.64 4.71 -4.04 -0.02 2.62 16 12 C 0.05 1.17 2.39 -155.66 -0.37 0.79 16 13 C -0.49 -12.13 9.06 -34.44 -0.31 -12.44 16 14 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 15 C 0.07 1.73 5.31 -17.82 -0.09 1.64 16 16 N -0.87 -20.67 10.38 55.43 0.58 -20.09 16 17 Si 0.90 19.22 29.55 -169.99 -5.02 14.20 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.19 -4.40 9.00 -26.70 -0.24 -4.64 16 22 C -0.22 -4.69 9.59 -26.70 -0.26 -4.94 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 29 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.16 3.71 4.08 -51.93 -0.21 3.50 16 32 H 0.07 1.60 8.13 -51.93 -0.42 1.18 16 33 H 0.26 6.04 8.32 -40.82 -0.34 5.70 16 34 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.06 1.49 4.62 -51.93 -0.24 1.25 16 36 H 0.07 1.50 6.01 -51.93 -0.31 1.18 16 37 H 0.07 1.56 8.14 -51.92 -0.42 1.14 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -26.13 306.23 -7.52 -33.65 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.95 Total: 8.02 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.93 Total: -13.60 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.36 Total: -28.03 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.60 Total: -18.85 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.13 -7.52 -33.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098056912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.261 kcal (2) G-P(sol) polarization free energy of solvation -26.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds