Wall clock time and date at job start Mon Mar 30 2020 07:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46912 * 2 1 4 4 C 1.34889 * 116.99931 * 179.97438 * 3 2 1 5 5 O 1.21621 * 120.00087 * 0.02562 * 4 3 2 6 6 C 1.46488 * 120.00048 * 180.02562 * 4 3 2 7 7 C 1.37997 * 126.26684 * 180.02562 * 6 4 3 8 8 C 1.39792 * 106.97295 * 179.97438 * 7 6 4 9 9 C 1.35493 * 107.84216 * 359.77613 * 8 7 6 10 10 N 1.34959 * 108.98221 * 0.36890 * 9 8 7 11 11 C 1.46501 * 125.63377 * 179.89388 * 10 9 8 12 12 C 1.53002 * 109.46752 * 267.38085 * 11 10 9 13 13 C 1.50702 * 115.54648 * 174.52110 * 12 11 10 14 14 H 1.08003 * 120.00064 * 215.45160 * 13 12 11 15 15 C 1.37880 * 120.00197 * 35.45360 * 13 12 11 16 16 N 1.31510 * 119.99644 * 6.39631 * 15 13 12 17 17 Si 1.86797 * 119.99915 * 186.39412 * 15 13 12 18 18 H 1.48496 * 109.47236 * 270.00092 * 17 15 13 19 19 H 1.48504 * 109.47298 * 30.00275 * 17 15 13 20 20 H 1.48502 * 109.46923 * 150.00019 * 17 15 13 21 21 C 1.52997 * 117.50230 * 320.19045 * 12 11 10 22 22 C 1.52995 * 117.50044 * 28.85190 * 12 11 10 23 23 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47533 * 299.99951 * 1 2 3 25 25 H 1.09002 * 109.47029 * 60.00237 * 1 2 3 26 26 H 1.08997 * 109.47430 * 240.00521 * 2 1 3 27 27 H 1.09002 * 109.47029 * 119.99762 * 2 1 3 28 28 H 1.08001 * 126.51040 * 359.94301 * 7 6 4 29 29 H 1.07995 * 126.08215 * 179.97438 * 8 7 6 30 30 H 1.08002 * 125.50835 * 180.26222 * 9 8 7 31 31 H 1.08995 * 109.47291 * 147.38445 * 11 10 9 32 32 H 1.08996 * 109.47324 * 27.38040 * 11 10 9 33 33 H 0.97008 * 119.99646 * 175.02366 * 16 15 13 34 34 H 1.08993 * 117.50174 * 215.00799 * 21 12 11 35 35 H 1.09004 * 117.49336 * 0.02562 * 21 12 11 36 36 H 1.08997 * 117.50095 * 359.97438 * 22 12 11 37 37 H 1.09008 * 117.49840 * 144.97214 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0921 0.5813 0.0005 6 6 3.9111 2.8995 0.0011 7 6 5.2513 3.2285 0.0012 8 6 5.3287 4.6243 0.0013 9 6 4.0640 5.1103 -0.0038 10 7 3.1964 4.0765 0.0012 11 6 1.7357 4.1881 0.0003 12 6 1.2219 4.1684 1.4413 13 6 -0.2572 4.4048 1.6072 14 1 -0.6236 4.9552 2.4612 15 6 -1.1427 3.9186 0.6688 16 7 -0.7118 3.1430 -0.3019 17 14 -2.9542 4.3615 0.7763 18 1 -3.6623 3.3522 1.6038 19 1 -3.0999 5.7021 1.3984 20 1 -3.5404 4.3826 -0.5880 21 6 1.8973 3.2047 2.4191 22 6 2.1504 4.7103 2.5298 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0823 2.5388 0.0017 29 1 6.2354 5.2110 0.0017 30 1 3.7937 6.1559 -0.0091 31 1 1.3076 3.3499 -0.5495 32 1 1.4430 5.1232 -0.4771 33 1 -1.3437 2.7424 -0.9194 34 1 1.2719 2.7417 3.1823 35 1 2.7080 2.5850 2.0358 36 1 3.1275 5.0804 2.2195 37 1 1.6915 5.2382 3.3659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098056912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:54 Heat of formation + Delta-G solvation = -20.040241 kcal Electronic energy + Delta-G solvation = -21107.985785 eV Core-core repulsion = 18045.036052 eV Total energy + Delta-G solvation = -3062.949733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50831 -40.74926 -38.30803 -37.35581 -34.18721 -32.96894 -32.46712 -30.33515 -28.07620 -26.83558 -25.05044 -23.14603 -23.04207 -21.49299 -21.23558 -20.42419 -18.67908 -18.23513 -17.76758 -17.49818 -16.56299 -16.25197 -16.11156 -15.03143 -14.83137 -14.72641 -14.35088 -13.82599 -13.72398 -13.47087 -13.41077 -13.22737 -13.06043 -12.81310 -12.72434 -12.55350 -12.30940 -12.25895 -12.06944 -11.64343 -11.46434 -11.34673 -10.98019 -10.68180 -9.99973 -9.53556 -9.14171 -8.00515 -6.13492 0.35354 1.45070 1.50569 1.57213 1.83748 1.85842 2.16091 2.25847 2.46017 3.03788 3.64105 3.84825 4.10308 4.19458 4.22664 4.26937 4.30079 4.40429 4.52571 4.59322 4.61085 4.89047 4.91494 4.93420 5.08006 5.08394 5.22115 5.25102 5.29694 5.39591 5.50997 5.61588 5.63459 5.90498 5.95231 6.18542 6.35201 6.52069 6.83348 6.88036 7.47769 8.96075 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.009310 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.808121 B = 3006.943774 C = 3964.941659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.065 3.935 3 O -0.326 6.326 4 C 0.530 3.470 5 O -0.549 6.549 6 C -0.081 4.081 7 C -0.118 4.118 8 C -0.215 4.215 9 C 0.025 3.975 10 N -0.400 5.400 11 C 0.134 3.866 12 C 0.040 3.960 13 C -0.515 4.515 14 H 0.050 0.950 15 C 0.044 3.956 16 N -0.872 5.872 17 Si 0.949 3.051 18 H -0.283 1.283 19 H -0.277 1.277 20 H -0.281 1.281 21 C -0.196 4.196 22 C -0.200 4.200 23 H 0.095 0.905 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.151 0.849 29 H 0.174 0.826 30 H 0.190 0.810 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.266 0.734 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 0.247 -1.836 5.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.008 4.008 3 O -0.241 6.241 4 C 0.379 3.621 5 O -0.443 6.443 6 C -0.191 4.191 7 C -0.145 4.145 8 C -0.238 4.238 9 C -0.114 4.114 10 N -0.072 5.072 11 C 0.015 3.985 12 C 0.039 3.961 13 C -0.553 4.553 14 H 0.068 0.932 15 C -0.160 4.160 16 N -0.508 5.508 17 Si 0.776 3.224 18 H -0.209 1.209 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.234 4.234 22 C -0.237 4.237 23 H 0.114 0.886 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.169 0.831 29 H 0.191 0.809 30 H 0.207 0.793 31 H 0.157 0.843 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.427 -0.141 -2.062 4.885 hybrid contribution -1.016 -0.166 0.377 1.096 sum 3.411 -0.307 -1.686 3.817 Atomic orbital electron populations 1.21595 0.91279 1.02320 1.03274 1.23091 0.96582 0.79629 1.01520 1.87008 1.21698 1.32545 1.82875 1.20222 0.81418 0.88502 0.72007 1.90769 1.61387 1.41962 1.50159 1.19577 0.92243 0.83854 1.23465 1.21476 0.92623 0.97003 1.03369 1.21089 0.97362 0.93167 1.12180 1.22547 0.89561 0.94313 1.04958 1.44765 1.08251 1.04920 1.49246 1.22125 0.72230 1.05284 0.98875 1.19189 0.92303 0.97662 0.86925 1.20578 0.89551 1.36768 1.08386 0.93165 1.25453 1.01567 0.94301 0.94645 1.69825 1.34721 1.29747 1.16510 0.85706 0.81161 0.78375 0.77204 1.20901 1.20222 1.20637 1.22827 1.03066 0.91760 1.05787 1.23038 1.01081 0.96095 1.03497 0.88636 0.93447 0.91924 0.91262 0.92183 0.83096 0.80872 0.79315 0.84340 0.91111 0.92380 0.92181 0.92104 0.89523 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 10.23 71.98 0.74 -3.51 16 2 C 0.07 2.34 6.20 71.98 0.45 2.79 16 3 O -0.33 -13.90 6.76 -58.03 -0.39 -14.30 16 4 C 0.53 22.74 6.59 69.97 0.46 23.20 16 5 O -0.55 -24.43 16.68 19.44 0.32 -24.11 16 6 C -0.08 -3.23 5.52 40.32 0.22 -3.01 16 7 C -0.12 -4.03 10.66 22.59 0.24 -3.79 16 8 C -0.22 -6.15 10.81 22.01 0.24 -5.91 16 9 C 0.03 0.79 9.59 83.58 0.80 1.59 16 10 N -0.40 -15.40 1.90 -511.55 -0.97 -16.37 16 11 C 0.13 5.85 4.71 86.38 0.41 6.25 16 12 C 0.04 1.86 2.39 -52.93 -0.13 1.73 16 13 C -0.52 -25.87 9.06 25.60 0.23 -25.64 16 14 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 15 C 0.04 2.11 5.31 84.66 0.45 2.56 16 16 N -0.87 -41.56 10.38 21.45 0.22 -41.34 16 17 Si 0.95 39.37 29.55 68.60 2.03 41.40 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 21 C -0.20 -9.03 9.00 30.62 0.28 -8.75 16 22 C -0.20 -8.45 9.59 30.62 0.29 -8.15 16 23 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 25 H 0.06 2.21 8.00 -2.39 -0.02 2.19 16 26 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 30 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.14 6.61 4.08 -2.39 -0.01 6.60 16 32 H 0.07 3.05 8.13 -2.39 -0.02 3.03 16 33 H 0.27 12.15 8.32 -92.70 -0.77 11.38 16 34 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.06 2.84 4.62 -2.38 -0.01 2.82 16 36 H 0.09 3.38 6.01 -2.39 -0.01 3.37 16 37 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -55.55 306.23 6.95 -48.59 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 1.07 Total: 26.77 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 4.68 Total: -20.64 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.75 Total: -57.71 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.07 Total: -38.40 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -55.55 6.95 -48.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098056912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.553 kcal (2) G-P(sol) polarization free energy of solvation -55.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds