Wall clock time and date at job start Mon Mar 30 2020 07:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29406 * 119.99815 * 2 1 4 4 O 1.41606 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.47474 * 120.00354 * 179.97438 * 2 1 3 6 6 C 1.39652 * 120.18301 * 0.25579 * 5 2 1 7 7 C 1.37874 * 119.89974 * 180.27804 * 6 5 2 8 8 C 1.38469 * 120.28609 * 359.73879 * 7 6 5 9 9 C 1.38153 * 120.37457 * 0.02562 * 8 7 6 10 10 C 1.38590 * 120.08930 * 359.97438 * 9 8 7 11 11 O 1.35764 * 120.13987 * 180.02562 * 10 9 8 12 12 C 1.42893 * 117.00132 * 0.02562 * 11 10 9 13 13 C 1.53008 * 109.47287 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46790 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46682 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00108 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99823 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47029 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46748 * 120.00389 * 19 17 15 22 22 H 1.48500 * 109.46760 * 240.00147 * 19 17 15 23 23 H 1.09004 * 109.47788 * 269.99971 * 1 2 3 24 24 H 1.09004 * 109.47689 * 30.00810 * 1 2 3 25 25 H 1.09000 * 109.47151 * 150.00117 * 1 2 3 26 26 H 0.96704 * 113.99759 * 180.02562 * 4 3 2 27 27 H 1.07998 * 120.04940 * 359.97438 * 6 5 2 28 28 H 1.08007 * 119.85518 * 179.76820 * 7 6 5 29 29 H 1.08002 * 119.81702 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.95369 * 179.97438 * 9 8 7 31 31 H 1.08996 * 109.47255 * 299.99785 * 12 11 10 32 32 H 1.08999 * 109.47054 * 59.99695 * 12 11 10 33 33 H 1.08996 * 109.47065 * 300.00229 * 13 12 11 34 34 H 1.08996 * 109.46551 * 59.99955 * 13 12 11 35 35 H 1.09004 * 109.47358 * 299.99682 * 14 13 12 36 36 H 1.08996 * 109.47602 * 60.00608 * 14 13 12 37 37 H 0.96998 * 119.99675 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1539 1.1207 0.0000 4 8 1.4459 2.3470 -0.0005 5 6 2.2444 -1.2771 0.0006 6 6 1.5501 -2.4888 -0.0043 7 6 2.2454 -3.6794 0.0021 8 6 3.6301 -3.6794 0.0078 9 6 4.3286 -2.4875 0.0078 10 6 3.6455 -1.2817 0.0014 11 8 4.3309 -0.1098 0.0008 12 6 5.7574 -0.1926 0.0064 13 6 6.3503 1.2180 0.0042 14 6 7.8777 1.1292 0.0108 15 6 8.4616 2.5185 0.0092 16 1 7.8085 3.3787 0.0036 17 6 9.8295 2.6914 0.0149 18 7 10.6246 1.6440 0.0213 19 14 10.5532 4.4136 0.0123 20 1 9.4542 5.4123 0.0031 21 1 11.3847 4.6029 1.2280 22 1 11.3958 4.5944 -1.1970 23 1 -0.3635 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0143 3.1294 -0.0009 27 1 0.4701 -2.4932 -0.0080 28 1 1.7077 -4.6161 0.0021 29 1 4.1671 -4.6164 0.0124 30 1 5.4086 -2.4954 0.0127 31 1 6.0870 -0.7242 0.8990 32 1 6.0937 -0.7291 -0.8809 33 1 6.0206 1.7492 -0.8887 34 1 6.0140 1.7547 0.8912 35 1 8.2070 0.5981 0.9039 36 1 8.2143 0.5923 -0.8761 37 1 11.5869 1.7656 0.0257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103351008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:51 Heat of formation + Delta-G solvation = -17.981086 kcal Electronic energy + Delta-G solvation = -19020.908473 eV Core-core repulsion = 15958.048032 eV Total energy + Delta-G solvation = -3062.860441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.14914 -37.62534 -36.89246 -34.22415 -33.96594 -31.75570 -30.51900 -29.59644 -28.24823 -26.86497 -23.82816 -23.27226 -21.66283 -20.44366 -19.55255 -17.87365 -16.90915 -16.38568 -15.95484 -15.79156 -15.53246 -14.90179 -14.45645 -14.38933 -14.18272 -13.77145 -13.35610 -13.20751 -12.58125 -12.25989 -12.23351 -12.17563 -11.87155 -11.54531 -11.21692 -11.04574 -10.64813 -10.58051 -10.44300 -10.11266 -9.73406 -9.69409 -9.50975 -9.14503 -8.74691 -8.39069 -7.97585 -6.04123 -4.06365 0.81323 1.42279 2.43520 3.15120 3.29964 3.37259 3.41359 3.50354 3.79466 4.38813 4.44425 4.81390 4.89091 5.07424 5.16861 5.26675 5.32324 5.40342 5.47554 5.51955 5.55109 5.62252 5.79836 5.96393 6.04837 6.17298 6.34999 6.41828 6.58445 6.59313 6.79779 6.88954 7.00949 7.59722 7.66938 7.72058 7.85975 7.94892 8.37127 9.00100 9.58025 11.07505 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.004107 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.893941 B = 6815.884070 C = 7981.720944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.156 3.844 3 N -0.294 5.294 4 O -0.420 6.420 5 C -0.097 4.097 6 C -0.055 4.055 7 C -0.172 4.172 8 C -0.062 4.062 9 C -0.218 4.218 10 C 0.174 3.826 11 O -0.282 6.282 12 C 0.053 3.947 13 C -0.104 4.104 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.405 0.595 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.985 -9.728 -0.021 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 N -0.037 5.037 4 O -0.329 6.329 5 C -0.099 4.099 6 C -0.075 4.075 7 C -0.191 4.191 8 C -0.081 4.081 9 C -0.236 4.236 10 C 0.124 3.876 11 O -0.193 6.193 12 C -0.022 4.022 13 C -0.141 4.141 14 C -0.013 4.013 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.254 0.746 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.500 -9.435 -0.023 20.767 hybrid contribution 0.377 0.999 0.006 1.068 sum -18.123 -8.436 -0.016 19.990 Atomic orbital electron populations 1.21213 0.91807 1.03731 1.03342 1.22984 0.93961 0.90897 0.95484 1.77117 1.22128 0.91280 1.13140 1.88287 1.35569 1.13764 1.95270 1.17581 0.89485 0.90864 1.11976 1.21017 0.99715 0.90374 0.96425 1.20880 0.94200 0.97707 1.06276 1.21094 0.94231 0.97530 0.95228 1.21380 1.01092 0.91926 1.09237 1.19292 0.90882 0.86057 0.91351 1.86361 1.20994 1.26245 1.85657 1.23279 0.76355 1.01807 1.00714 1.21666 0.98719 0.91779 1.01982 1.19059 0.87110 0.97693 0.97444 1.21226 0.91513 0.92386 1.50611 0.92416 1.25020 0.97270 0.96938 0.95220 1.69969 1.03597 1.29091 1.50859 0.86505 0.79149 0.84597 0.77595 1.19661 1.20969 1.20975 0.90281 0.90405 0.90634 0.74637 0.84931 0.85626 0.85632 0.84667 0.92383 0.92387 0.92238 0.92242 0.96370 0.96370 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.28 36.00 0.33 -1.14 16 2 C 0.16 2.21 7.11 -79.86 -0.57 1.64 16 3 N -0.29 -4.83 9.97 35.06 0.35 -4.48 16 4 O -0.42 -5.94 13.73 -11.47 -0.16 -6.10 16 5 C -0.10 -1.33 5.88 -104.91 -0.62 -1.95 16 6 C -0.06 -0.57 9.36 -39.19 -0.37 -0.94 16 7 C -0.17 -1.64 10.02 -39.63 -0.40 -2.04 16 8 C -0.06 -0.66 10.03 -39.53 -0.40 -1.05 16 9 C -0.22 -2.89 9.03 -39.48 -0.36 -3.25 16 10 C 0.17 2.69 6.70 -38.75 -0.26 2.44 16 11 O -0.28 -5.04 8.01 -19.00 -0.15 -5.19 16 12 C 0.05 0.95 4.74 37.16 0.18 1.13 16 13 C -0.10 -2.21 5.52 -26.73 -0.15 -2.35 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.85 7.35 -51.93 -0.38 0.47 16 25 H 0.07 0.59 6.47 -51.93 -0.34 0.25 16 26 H 0.41 4.27 9.28 45.56 0.42 4.69 16 27 H 0.13 0.97 6.35 -52.49 -0.33 0.64 16 28 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.74 6.30 -52.49 -0.33 1.41 16 31 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 32 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -32.94 317.05 -6.87 -39.81 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.26 Total: 1.13 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -3.15 Total: -20.55 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 1.09 Total: -30.52 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.31 Total: -11.29 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.94 -6.87 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103351008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.827 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds