Wall clock time and date at job start Mon Mar 30 2020 07:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29406 * 119.99815 * 2 1 4 4 O 1.41606 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.47474 * 120.00354 * 179.97438 * 2 1 3 6 6 C 1.39652 * 120.18301 * 0.25579 * 5 2 1 7 7 C 1.37874 * 119.89974 * 180.27804 * 6 5 2 8 8 C 1.38469 * 120.28609 * 359.73879 * 7 6 5 9 9 C 1.38153 * 120.37457 * 0.02562 * 8 7 6 10 10 C 1.38590 * 120.08930 * 359.97438 * 9 8 7 11 11 O 1.35764 * 120.13987 * 180.02562 * 10 9 8 12 12 C 1.42893 * 117.00132 * 0.02562 * 11 10 9 13 13 C 1.53008 * 109.47287 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46790 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46682 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00108 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99823 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47029 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46748 * 120.00389 * 19 17 15 22 22 H 1.48500 * 109.46760 * 240.00147 * 19 17 15 23 23 H 1.09004 * 109.47788 * 269.99971 * 1 2 3 24 24 H 1.09004 * 109.47689 * 30.00810 * 1 2 3 25 25 H 1.09000 * 109.47151 * 150.00117 * 1 2 3 26 26 H 0.96704 * 113.99759 * 180.02562 * 4 3 2 27 27 H 1.07998 * 120.04940 * 359.97438 * 6 5 2 28 28 H 1.08007 * 119.85518 * 179.76820 * 7 6 5 29 29 H 1.08002 * 119.81702 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.95369 * 179.97438 * 9 8 7 31 31 H 1.08996 * 109.47255 * 299.99785 * 12 11 10 32 32 H 1.08999 * 109.47054 * 59.99695 * 12 11 10 33 33 H 1.08996 * 109.47065 * 300.00229 * 13 12 11 34 34 H 1.08996 * 109.46551 * 59.99955 * 13 12 11 35 35 H 1.09004 * 109.47358 * 299.99682 * 14 13 12 36 36 H 1.08996 * 109.47602 * 60.00608 * 14 13 12 37 37 H 0.96998 * 119.99675 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1539 1.1207 0.0000 4 8 1.4459 2.3470 -0.0005 5 6 2.2444 -1.2771 0.0006 6 6 1.5501 -2.4888 -0.0043 7 6 2.2454 -3.6794 0.0021 8 6 3.6301 -3.6794 0.0078 9 6 4.3286 -2.4875 0.0078 10 6 3.6455 -1.2817 0.0014 11 8 4.3309 -0.1098 0.0008 12 6 5.7574 -0.1926 0.0064 13 6 6.3503 1.2180 0.0042 14 6 7.8777 1.1292 0.0108 15 6 8.4616 2.5185 0.0092 16 1 7.8085 3.3787 0.0036 17 6 9.8295 2.6914 0.0149 18 7 10.6246 1.6440 0.0213 19 14 10.5532 4.4136 0.0123 20 1 9.4542 5.4123 0.0031 21 1 11.3847 4.6029 1.2280 22 1 11.3958 4.5944 -1.1970 23 1 -0.3635 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0143 3.1294 -0.0009 27 1 0.4701 -2.4932 -0.0080 28 1 1.7077 -4.6161 0.0021 29 1 4.1671 -4.6164 0.0124 30 1 5.4086 -2.4954 0.0127 31 1 6.0870 -0.7242 0.8990 32 1 6.0937 -0.7291 -0.8809 33 1 6.0206 1.7492 -0.8887 34 1 6.0140 1.7547 0.8912 35 1 8.2070 0.5981 0.9039 36 1 8.2143 0.5923 -0.8761 37 1 11.5869 1.7656 0.0257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103351008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:51 Heat of formation + Delta-G solvation = -39.253833 kcal Electronic energy + Delta-G solvation = -19021.830928 eV Core-core repulsion = 15958.048032 eV Total energy + Delta-G solvation = -3063.782897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20646 -38.76720 -37.91057 -35.98540 -35.16316 -33.69749 -31.45298 -30.69048 -29.19054 -28.63918 -25.43035 -24.40707 -22.86900 -22.06484 -20.66485 -19.04672 -18.46448 -17.88092 -17.18852 -17.08812 -16.54474 -16.46964 -15.84610 -15.46297 -15.17070 -14.85903 -14.65370 -14.61234 -14.06676 -13.63900 -13.55171 -13.41689 -13.01250 -12.86724 -12.60342 -12.49153 -12.33254 -12.19085 -11.85721 -11.56680 -11.49314 -11.24831 -11.08087 -10.70096 -10.59240 -9.68062 -9.01786 -8.23980 -6.34828 -0.12025 0.49776 1.39259 1.39379 1.46561 1.53141 2.16238 2.27943 2.42316 2.88389 3.09807 3.46583 3.87845 4.02003 4.05026 4.17582 4.26195 4.31849 4.45351 4.46730 4.57587 4.66330 4.66439 4.79898 4.90952 5.01701 5.06493 5.17495 5.30717 5.45370 5.46963 5.56548 5.63353 5.78362 5.87259 5.95335 6.18467 6.48616 6.80159 6.89831 7.34418 8.88354 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.004107 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.893941 B = 6815.884070 C = 7981.720944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.153 3.847 3 N -0.345 5.345 4 O -0.425 6.425 5 C -0.118 4.118 6 C -0.045 4.045 7 C -0.159 4.159 8 C -0.059 4.059 9 C -0.234 4.234 10 C 0.135 3.865 11 O -0.302 6.302 12 C 0.067 3.933 13 C -0.089 4.089 14 C 0.030 3.970 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.414 0.586 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.053 0.947 35 H -0.001 1.001 36 H 0.000 1.000 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.857 -11.096 -0.016 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 N -0.089 5.089 4 O -0.335 6.335 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.177 4.177 8 C -0.078 4.078 9 C -0.253 4.253 10 C 0.087 3.913 11 O -0.214 6.214 12 C -0.008 4.008 13 C -0.127 4.127 14 C -0.007 4.007 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.791 3.209 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.202 1.202 23 H 0.110 0.890 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.265 0.735 27 H 0.187 0.813 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.394 -10.808 -0.017 23.081 hybrid contribution 0.868 1.262 0.007 1.532 sum -19.526 -9.546 -0.011 21.734 Atomic orbital electron populations 1.21268 0.89064 1.04815 1.04438 1.23517 0.96028 0.90511 0.93462 1.77081 1.23706 0.92381 1.15718 1.88235 1.35932 1.13875 1.95470 1.17969 0.88943 0.92088 1.12967 1.21480 1.01490 0.89144 0.94349 1.21399 0.93779 0.99038 1.03499 1.21501 0.95207 0.97457 0.93602 1.21491 1.01090 0.92463 1.10245 1.19698 0.91844 0.85794 0.94000 1.86291 1.20001 1.28162 1.86909 1.22883 0.77491 0.99279 1.01114 1.21343 0.95952 0.94053 1.01355 1.18911 0.90002 0.96284 0.95535 1.21639 0.92247 0.93459 1.50947 0.92366 1.25949 0.97666 1.01423 0.94514 1.70084 1.04084 1.31488 1.51434 0.85379 0.78379 0.79239 0.77945 1.18823 1.20139 1.20157 0.88986 0.91344 0.87485 0.73548 0.81303 0.81592 0.82836 0.85323 0.92007 0.92009 0.92786 0.92793 0.98213 0.98211 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.28 71.23 0.66 -1.89 16 2 C 0.15 4.24 7.11 45.35 0.32 4.57 16 3 N -0.35 -11.62 9.97 -42.98 -0.43 -12.05 16 4 O -0.42 -12.37 13.73 -38.80 -0.53 -12.90 16 5 C -0.12 -3.08 5.88 -20.05 -0.12 -3.20 16 6 C -0.05 -0.76 9.36 22.53 0.21 -0.55 16 7 C -0.16 -2.31 10.02 22.24 0.22 -2.09 16 8 C -0.06 -1.08 10.03 22.30 0.22 -0.86 16 9 C -0.23 -6.10 9.03 22.33 0.20 -5.90 16 10 C 0.14 4.21 6.70 22.81 0.15 4.36 16 11 O -0.30 -11.24 8.01 -90.91 -0.73 -11.97 16 12 C 0.07 2.54 4.74 71.98 0.34 2.88 16 13 C -0.09 -3.98 5.52 30.60 0.17 -3.81 16 14 C 0.03 1.60 4.97 29.85 0.15 1.75 16 15 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 19 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.41 7.35 -2.38 -0.02 1.40 16 25 H 0.11 1.25 6.47 -2.39 -0.02 1.23 16 26 H 0.41 9.29 9.28 -74.05 -0.69 8.61 16 27 H 0.17 1.55 6.35 -2.91 -0.02 1.53 16 28 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.13 3.39 6.30 -2.91 -0.02 3.37 16 31 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 32 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 33 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -73.51 317.05 4.24 -69.26 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.39 Total: 12.87 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.23 Total: -35.62 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -0.14 Total: -68.41 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.26 Total: -24.87 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -73.51 4.24 -69.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103351008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.010 kcal (2) G-P(sol) polarization free energy of solvation -73.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds